Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft983_2 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 149 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft983_2a-0001 ID=EsuBft983_2a-0001|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1491bp|location=Sequence derived from alignment at Scaffold_233:345922..347636+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTCGTCCCCGCTTTAAAGACACTCTTCTTAAGGAAACTCCCCGCTATAAA
GACACATTATTTCCCCAGAACATGGTGCCCCGCAGATGTACAATAATATA
GGGGGGTAGCGTTTCCACTATGCGGCCCCCCAAAAAAAATTTGCTGGGGC
AGCAAATCTGTAAGGCATTGTAACATCGACAGCGGTCTGCTGCAGCCCGC
ACTACTGCGTGTGGGTATGGAGAGATTCCTCCCATCTGCTGGCGAGTCGT
CAGCTGCCGGCTTGAGGCCATGTGGCGAACCCACGTGCCAGCAAAAGTCT
CAACTCGTGTCAGCGGTTCACCAGTGCCCGTGCGGGCGATCCATGCACGC
GTTTTGTGGTCGGGGCATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGT
GCTCGGATTGCCAGAAGAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGC
AGTCCCATGGAAGTGGATGCCGAAGAAAATGAGCAGGACAGCCGCAGGGG
CTGCCGGGGCCTGAGCGACGCAGGCCAGGCAACAATGCTGGATGTGACGG
AGATCCTTTCGCAGAAGTGGGAGAGCTTCTCGGACCAGACTGTTGTCAGG
TGCTGGCTCAAGGCCACCATTCTTCCTAGGGAGCACGAGAACGCGCTCAA
GGGCAGAGACACGCGGCTGGACCGAGAAGACAAGGAAGCGGCCGCCTTGG
ACGACCTTTGCGATATGGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAG
GACTTGGACGCTAGGTCCATGCCGCGAGTGTTGTCGGACAACTTGTTCGT
CGAGAGCACCTCCGGCCTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCA
CGTGGCTTAGTGTAGAGGACGATGAAGAGGTCTTGAGGGAAGAGGTAGAA
CTCGAGATGGAAGAGGTAACGGAGAACATGTCAAGAGTACACGTCGAAGA
CGACGTGTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCA
TGACATCTACGATTTCAGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTC
CGCTCCTATTTGTACGCGAACGGAAGAGACGGCGAGTACAGCGAAACGGT
GTACCTTCTTTCGAAGACTGTGCATTCGTTCACTCATGAAACTCAAGTCA
AGCGAAGAACGAAGGAGGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTG
TGGGCGACGTAGTTTTTGGTGTTTGAGGACAACACACTTGGCAGCCCACA
TTCATTGTTTGGGATTTTTTTGCCTTTCTCGTGGAGTTAAATTTTGGCAT
TTTTTGTTTTGTGTTTTTGCCTCGTGTTGACCTTTGGGGAAGAGCGGTGT
TCTCTTTTCGGTGGGTTTGCCCGATTTTTTGTATGTTGTGGTCTGCGCTA
CCGACCGTTTTCTAGTGTCCCTCAGATCCCTCTGAGGGGTCGACTGGGTT
TGTTTGGTCCCTATGTGGCAGGTAACTTGCGTGTATCGTAT back to topprotein sequence of EsuBft983_2a-0001 >EsuBft983_2 ID=EsuBft983_2|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=331bp
MERFLPSAGESSAAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRG
IGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDSRRGCRGLS
DAGQATMLDVTEILSQKWESFSDQTVVRCWLKATILPREHENALKGRDTR
LDREDKEAAALDDLCDMVKKMSLPESAKDLDARSMPRVLSDNLFVESTSG
LTEQEVRSAVSTWLSVEDDEEVLREEVELEMEEVTENMSRVHVEDDVSSE
EEDQDGRQESCMTSTISEAEVRSRLEDVRSYLYANGRDGEYSETVYLLSK
TVHSFTHETQVKRRTKEGGEVQATLRDVWAT back to topmRNA from alignment at Scaffold_233:345922..347636+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft983_2a-0001 ID=EsuBft983_2a-0001|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1715bp|location=Sequence derived from alignment at Scaffold_233:345922..347636+ (Ectocarpus subulatus male Bft15b)
GTCGTCCCCGCTTTAAAGACACTCTTCTTAAGGAAACTCCCCGCTATAAA
GACACATTATTTCCCCAGAACATGGTGCCCCGCAGATGTACAATAATATA
GGGGGGTAGCGTTTCCACTATGCGGCCCCCCAAAAAAAATTTGCTGGGGC
AGCAAATCTGTAAGGCATTGTAACATCGACAGCGGTCTGCTGCAGCCCGC
ACTACTGCGTGTGGGTATGGAGAGATTCCTCCCATCTGCTGGCGAGTCGT
CAGCTGCCGGCTTGAGGCCATGTGGCGAACCCACGTGCCAGCAAAAGTCT
CAACTCGTGTCAGCGGTTCACCAGTGCCCGTGCGGGCGATCCATGCACGC
GTTTTGTGGTCGGGGCATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGT
GCTCGGATTGCCAGAAGAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGC
AGTCCCATGGAAGTGGATGCCGAAGAAAATGAGCAGGACAGCCGCAGGTG
ATTTTTTACAGCAGTCCCGTCGGCGAAACTACGGAAGTGTGTGCGTCTGG
TCAGTACAGCAGTAGCAGTTGCTCTCTGACCAACAACGCCGCAACAGGGT
CTCCGACATAAACATGCCTGCCGTACACCACATCCAGCGAAATCCACCCT
CTCTCCTGGTGATTAAAAACTGTTGATCATTTTTTTTTTTTTACTGTGTT
CCTTGCATCTTTGTTTTGCAGGGGCTGCCGGGGCCTGAGCGACGCAGGCC
AGGCAACAATGCTGGATGTGACGGAGATCCTTTCGCAGAAGTGGGAGAGC
TTCTCGGACCAGACTGTTGTCAGGTGCTGGCTCAAGGCCACCATTCTTCC
TAGGGAGCACGAGAACGCGCTCAAGGGCAGAGACACGCGGCTGGACCGAG
AAGACAAGGAAGCGGCCGCCTTGGACGACCTTTGCGATATGGTCAAGAAG
ATGTCCTTGCCGGAGAGTGCCAAGGACTTGGACGCTAGGTCCATGCCGCG
AGTGTTGTCGGACAACTTGTTCGTCGAGAGCACCTCCGGCCTCACTGAAC
AAGAAGTGCGGAGCGCAGTGAGCACGTGGCTTAGTGTAGAGGACGATGAA
GAGGTCTTGAGGGAAGAGGTAGAACTCGAGATGGAAGAGGTAACGGAGAA
CATGTCAAGAGTACACGTCGAAGACGACGTGTCCAGTGAAGAGGAAGACC
AGGACGGTAGGCAAGAGTCGTGCATGACATCTACGATTTCAGAGGCCGAG
GTTCGCTCTCGTCTCGAGGATGTCCGCTCCTATTTGTACGCGAACGGAAG
AGACGGCGAGTACAGCGAAACGGTGTACCTTCTTTCGAAGACTGTGCATT
CGTTCACTCATGAAACTCAAGTCAAGCGAAGAACGAAGGAGGGGGGTGAG
GTGCAGGCGACTCTTCGGGATGTGTGGGCGACGTAGTTTTTGGTGTTTGA
GGACAACACACTTGGCAGCCCACATTCATTGTTTGGGATTTTTTTGCCTT
TCTCGTGGAGTTAAATTTTGGCATTTTTTGTTTTGTGTTTTTGCCTCGTG
TTGACCTTTGGGGAAGAGCGGTGTTCTCTTTTCGGTGGGTTTGCCCGATT
TTTTGTATGTTGTGGTCTGCGCTACCGACCGTTTTCTAGTGTCCCTCAGA
TCCCTCTGAGGGGTCGACTGGGTTTGTTTGGTCCCTATGTGGCAGGTAAC
TTGCGTGTATCGTAT back to topCoding sequence (CDS) from alignment at Scaffold_233:345922..347636+ >EsuBft983_2a-0001 ID=EsuBft983_2a-0001|Name=EsuBft983_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=996bp|location=Sequence derived from alignment at Scaffold_233:345922..347636+ (Ectocarpus subulatus male Bft15b)
ATGGAGAGATTCCTCCCATCTGCTGGCGAGTCGTCAGCTGCCGGCTTGAG
GCCATGTGGCGAACCCACGTGCCAGCAAAAGTCTCAACTCGTGTCAGCGG
TTCACCAGTGCCCGTGCGGGCGATCCATGCACGCGTTTTGTGGTCGGGGC
ATCGGAGAGGAAGGCTACGGACAGCAGAGAGAGTGCTCGGATTGCCAGAA
GAGCAAAGGTGGAGACCAGGCTGGCAGCAGCAGCAGTCCCATGGAAGTGG
ATGCCGAAGAAAATGAGCAGGACAGCCGCAGGGGCTGCCGGGGCCTGAGC
GACGCAGGCCAGGCAACAATGCTGGATGTGACGGAGATCCTTTCGCAGAA
GTGGGAGAGCTTCTCGGACCAGACTGTTGTCAGGTGCTGGCTCAAGGCCA
CCATTCTTCCTAGGGAGCACGAGAACGCGCTCAAGGGCAGAGACACGCGG
CTGGACCGAGAAGACAAGGAAGCGGCCGCCTTGGACGACCTTTGCGATAT
GGTCAAGAAGATGTCCTTGCCGGAGAGTGCCAAGGACTTGGACGCTAGGT
CCATGCCGCGAGTGTTGTCGGACAACTTGTTCGTCGAGAGCACCTCCGGC
CTCACTGAACAAGAAGTGCGGAGCGCAGTGAGCACGTGGCTTAGTGTAGA
GGACGATGAAGAGGTCTTGAGGGAAGAGGTAGAACTCGAGATGGAAGAGG
TAACGGAGAACATGTCAAGAGTACACGTCGAAGACGACGTGTCCAGTGAA
GAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATGACATCTACGATTTC
AGAGGCCGAGGTTCGCTCTCGTCTCGAGGATGTCCGCTCCTATTTGTACG
CGAACGGAAGAGACGGCGAGTACAGCGAAACGGTGTACCTTCTTTCGAAG
ACTGTGCATTCGTTCACTCATGAAACTCAAGTCAAGCGAAGAACGAAGGA
GGGGGGTGAGGTGCAGGCGACTCTTCGGGATGTGTGGGCGACGTAG back to top
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