EsuBft982_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft982_7a-0001
Unique NameEsuBft982_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:360474..360970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft982_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft982_7aEsuBft982_7aEctocarpus subulatus male Bft15bgeneScaffold_360 360474..360970 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_7a-0001-exonEsuBft982_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 360474..360864 +
EsuBft982_7a-0001-exonagat-exon-72954Ectocarpus subulatus male Bft15bexonScaffold_360 360954..360970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_7a-0001-cdsEsuBft982_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 360474..360864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_7a-0001EsuBft982_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 360474..360970 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft982_7a-0001 ID=EsuBft982_7a-0001|Name=EsuBft982_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=408bp|location=Sequence derived from alignment at Scaffold_360:360474..360970+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCCGATCAAGCTGCCGCCGCACGAGCGCTAGCCCAGGCGGCTGC
TCTCAGGGCGCGGGACGAAGCCGAGCAGTCGAAGCTCGGCGTTCCCCTCA
GCAATGATCTGTTGAGAGAGTTTCGGCTTGTGCTGCTCAAGACCGGCGGC
AAGGTCATGAGCGCCCTTGCTCAGAAGACGTTCCAAGCCTTCCCGATCGC
ATACGCCGCGATCACCTGCAAGCAGTCAGAACAGATGGATAAAGGTGAAC
GTGACGTGGTGTGTACGAAGACCCTCGTGGAGTTCGCCATCCCGCAGTTC
ATCGTGCTGGCGAAGGCTGCAGCGAAGAAGCTTGAGCTGCCGCTCCCGCT
GGACATCGAGGACAAGATGTATCTCACGTCGTTGGGCACAGATATGACGT
ACGTGTAG
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protein sequence of EsuBft982_7a-0001

>EsuBft982_7 ID=EsuBft982_7|Name=EsuBft982_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MEADQAAAARALAQAAALRARDEAEQSKLGVPLSNDLLREFRLVLLKTGG
KVMSALAQKTFQAFPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQF
IVLAKAAAKKLELPLPLDIEDKMYLTSLGTDMTYV
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mRNA from alignment at Scaffold_360:360474..360970+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft982_7a-0001 ID=EsuBft982_7a-0001|Name=EsuBft982_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=497bp|location=Sequence derived from alignment at Scaffold_360:360474..360970+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCCGATCAAGCTGCCGCCGCACGAGCGCTAGCCCAGGCGGCTGC
TCTCAGGGCGCGGGACGAAGCCGAGCAGTCGAAGCTCGGCGTTCCCCTCA
GCAATGATCTGTTGAGAGAGTTTCGGCTTGTGCTGCTCAAGACCGGCGGC
AAGGTCATGAGCGCCCTTGCTCAGAAGACGTTCCAAGCCTTCCCGATCGC
ATACGCCGCGATCACCTGCAAGCAGTCAGAACAGATGGATAAAGGTGAAC
GTGACGTGGTGTGTACGAAGACCCTCGTGGAGTTCGCCATCCCGCAGTTC
ATCGTGCTGGCGAAGGCTGCAGCGAAGAAGCTTGAGCTGCCGCTCCCGCT
GGACATCGAGGACAAGATGTATCTCACGTCGTTGGGCACAGGTATGTTGC
ATCCACGGATGCAGTGTTGTTCGGTTGCACTCGATCCACGCGGGCGTGAA
GGCCTGAGGATGTTTAAAGTTTTGGCGTAGATATGACGTACGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_360:360474..360970+

>EsuBft982_7a-0001 ID=EsuBft982_7a-0001|Name=EsuBft982_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_360:360474..360970+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCCGATCAAGCTGCCGCCGCACGAGCGCTAGCCCAGGCGGCTGC
TCTCAGGGCGCGGGACGAAGCCGAGCAGTCGAAGCTCGGCGTTCCCCTCA
GCAATGATCTGTTGAGAGAGTTTCGGCTTGTGCTGCTCAAGACCGGCGGC
AAGGTCATGAGCGCCCTTGCTCAGAAGACGTTCCAAGCCTTCCCGATCGC
ATACGCCGCGATCACCTGCAAGCAGTCAGAACAGATGGATAAAGGTGAAC
GTGACGTGGTGTGTACGAAGACCCTCGTGGAGTTCGCCATCCCGCAGTTC
ATCGTGCTGGCGAAGGCTGCAGCGAAGAAGCTTGAGCTGCCGCTCCCGCT
GGACATCGAGGACAAGATGTATCTCACGTCGTTGGGCACAGATATGACGT
ACGTGTAG
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