EsuBft982_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft982_10a-0001
Unique NameEsuBft982_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:354266..355157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft982_10
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length68
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft982_10aEsuBft982_10aEctocarpus subulatus male Bft15bgeneScaffold_360 354266..355157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_10a-0001-exonagat-exon-72957Ectocarpus subulatus male Bft15bexonScaffold_360 354266..354742 -
EsuBft982_10a-0001-exonEsuBft982_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 354952..355157 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_10a-0001-exonagat-three_prime_utr-23766Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 354266..354450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_10a-0001-cdsEsuBft982_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 354451..354742 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_10a-0001-exonagat-five_prime_utr-15480Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 355056..355157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_10a-0001EsuBft982_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 354451..355055 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft982_10a-0001 ID=EsuBft982_10a-0001|Name=EsuBft982_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=683bp|location=Sequence derived from alignment at Scaffold_360:354266..355157- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTTCGTTGTTGGTGCTCGGCGCCGGCGTGACGAACTCCTGGCTGTCCGC
CGCCGGTCAGACATCCAGGCCCGGTTCTGCAAGAGTGGGGGGTGCGCACG
CCATGTCAGGCAGCCACGCTTCAGGGGGGGCGAGTGGACCTTCGGGAAAC
CGTGGAAGGAAGCCCCGTGCCAAGACCATTAAGCTCGCCGAGGATGGGCT
AGATAGCTTCATGGAGCGACAGGTGGCTGACGCTCGGGCACTCGCCGATC
AGAAATGTGAAGAGGACGACGGGAGGCGGGCGGCGGAAGCTAAACGAGAA
GTAGGGAGGAGGCAAGAGCTCCTGGACATGATGGCCCACGAGAGGGCAAT
GCGGGAAGATGAAAGGAAACACGACAGACAAGAGCGTGAAAGGGAGAGGG
CGACTGCACGGGCAGAGCAAAAGGAAGATCGTGATCACCAAATCAGGATG
ATGCAACTCCAGGTAGACCTGGCGAAGGCGAAGGGCAACAATAACTAGCT
AACTGGTTGGGGTTGCTGTTGCTGCAGTTGCTAGGGCATGCGTTGCATGT
GTTGTTTGTTTTTTTCAACAGCAGGCTCTTCAAAATATTATCGTGGCCTC
CGTTGCGCCTTGCGCGTTTTTTTCGGGGGAGCTTGCCTGTTCGGGGTGGG
GAAAAATGGGAATGGGTTTTCGCCCTTGCTGCT
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protein sequence of EsuBft982_10a-0001

>EsuBft982_10 ID=EsuBft982_10|Name=EsuBft982_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MSGSHASGGASGPSGNRGRKPRAKTIKLAEDGLDSFMERQVADARALADQ
KCEEDDGRRAAEAKREVGRRQELLDMMAHERAMREDERKHDRQERERERA
TARAEQKEDRDHQIRMMQLQVDLAKAKGNNN
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mRNA from alignment at Scaffold_360:354266..355157-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft982_10a-0001 ID=EsuBft982_10a-0001|Name=EsuBft982_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=892bp|location=Sequence derived from alignment at Scaffold_360:354266..355157- (Ectocarpus subulatus male Bft15b)
GCTTCGTTGTTGGTGCTCGGCGCCGGCGTGACGAACTCCTGGCTGTCCGC
CGCCGGTCAGACATCCAGGCCCGGTTCTGCAAGAGTGGGGGGTGCGCACG
CCATGTCAGGCAGCCACGCTTCAGGGGGGGCGAGTGGACCTTCGGGAAAC
CGTGGAAGGAAGCCCCGTGCCAAGACCATTAAGCTCGCCGAGGATGGGCT
AGATAGGTAAGGTTGTTCGTCGACTCTGCCCGTGTCTTGGTTCTCTATTT
CCTTCGTGTGGTATACGCTGTGCATTATTGTTAGATTCTTTTGGTGGACG
TAACCTGTACCAGAGAAGTGTCGTAGCAGTAATATTGTTGGCTACTCCAT
CAGGGAGGTGCCAGAGCTTATCCTACCCTGGTGTCTCTCTTGCGCCGTTG
TGCCACGTGTCCCAGCTTCATGGAGCGACAGGTGGCTGACGCTCGGGCAC
TCGCCGATCAGAAATGTGAAGAGGACGACGGGAGGCGGGCGGCGGAAGCT
AAACGAGAAGTAGGGAGGAGGCAAGAGCTCCTGGACATGATGGCCCACGA
GAGGGCAATGCGGGAAGATGAAAGGAAACACGACAGACAAGAGCGTGAAA
GGGAGAGGGCGACTGCACGGGCAGAGCAAAAGGAAGATCGTGATCACCAA
ATCAGGATGATGCAACTCCAGGTAGACCTGGCGAAGGCGAAGGGCAACAA
TAACTAGCTAACTGGTTGGGGTTGCTGTTGCTGCAGTTGCTAGGGCATGC
GTTGCATGTGTTGTTTGTTTTTTTCAACAGCAGGCTCTTCAAAATATTAT
CGTGGCCTCCGTTGCGCCTTGCGCGTTTTTTTCGGGGGAGCTTGCCTGTT
CGGGGTGGGGAAAAATGGGAATGGGTTTTCGCCCTTGCTGCT
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Coding sequence (CDS) from alignment at Scaffold_360:354266..355157-

>EsuBft982_10a-0001 ID=EsuBft982_10a-0001|Name=EsuBft982_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_360:354266..355157- (Ectocarpus subulatus male Bft15b)
ATGTCAGGCAGCCACGCTTCAGGGGGGGCGAGTGGACCTTCGGGAAACCG
TGGAAGGAAGCCCCGTGCCAAGACCATTAAGCTCGCCGAGGATGGGCTAG
ATAGCTTCATGGAGCGACAGGTGGCTGACGCTCGGGCACTCGCCGATCAG
AAATGTGAAGAGGACGACGGGAGGCGGGCGGCGGAAGCTAAACGAGAAGT
AGGGAGGAGGCAAGAGCTCCTGGACATGATGGCCCACGAGAGGGCAATGC
GGGAAGATGAAAGGAAACACGACAGACAAGAGCGTGAAAGGGAGAGGGCG
ACTGCACGGGCAGAGCAAAAGGAAGATCGTGATCACCAAATCAGGATGAT
GCAACTCCAGGTAGACCTGGCGAAGGCGAAGGGCAACAATAACTAG
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