Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft981_9 |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 6 |
| Length | 154 |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-18_000840.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft981_9a-0001 ID=EsuBft981_9a-0001|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1542bp|location=Sequence derived from alignment at Scaffold_347:317458..323255+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCTCTTGCAGAGTTGCGAATCTGTCGATCAACCGACGGAGCAGCGAGC
AGCGGAGTAGTCGCTGCTGCTGCTTTGTTCTGCGCAGCTGCCAAAACGCA
CGATATGGCGCCAACAGGTCGATGGAACAGAATGTGGTTCGTGCTCGTGA
TAACTTTCGTAACGCTGTTGTCTTCGCACGCTGATGCTGCTAGGCTTGGG
GGAGAAGGTGTCGCGCTCACCCGATCCGGGGACGTCCTCAGCGCGGATGG
AAGCACTCAAGAAGAGTACGAGGTGCGGGAATCGGATCCTATTACGGCTC
ACTTCATCTCGTTGGGCTCGGCAGCGCAGAAGCTGCTGAACAAGTCGGGT
TACGCCTTCGGTTCCCTCGTTCGGATCTCACACTCAGATAGAGACAAAGA
GTACGGCGAGGGGCCGGAGAGAACGGCGTGGTTTCCCATGGTGGTTTTCT
TAGACGTTTTCGAAGAGGGGTCGGGGGACAACGGCGAAGACATGACGGCG
CGGTACGAGGTGGCGTTGGATTTCCACCCGAAGACAATCGCCGCTCCGGG
GCTAGTGGTCCTCGCGGCGTGGAAGATCAACACGGACGGGGGCGTGGCGG
CTAAACTCGATGTTCTCCCGGCGGAGGAAAAGGGGTTCCTGGAGAAAAAC
AGGCCGGGGATCACCATGATGTTCGGCGTTATCATCGCGTCCGGAATCGT
CAAGTTCCTCAGACGCGGTCTCGAACGGCTCGTGAAGAAGGCTAAGGCAG
ACAGGCAAGAGGGAACGGCAACCGCAGCGCCAGCGACGGAGGCAGAGCCG
TCGGTAGCGGCGGCACGAGGAAAGGGCGCCGAAAATCCCAAGAAGAAAAA
GGAAGGCGGCAATAACGTCAAGCAAGACTGATCTGCCCAGTGTGTTCATA
AGTAGTCTTGTCGGGGAAACACCAACGATCTCGTAGGTACCAGCGTCATG
TAGGTGTACGTGTACCTGTACCTTTTGTGTTCTTCTTGACATGTCATCGG
CCGCGCTAACCGGCTGACCAGTGAAAAGTGTTTTGCGGGGTAAAACAAGC
GAAAAAAATGTTTTTGTTCCCTGACGGGGGAACGCGGGACGCGCGGAGGA
GATTGGACGATAGGGCATGTGTGCGCCCCGCGTGTCTCAAATATGCATAG
GATTAGTATTTCACAATCTTTGACGTATGTTGTTTTACTATTTACCGGCA
ACGTAGGGTACGTCGGTTGAGAAATGATATGTTTGTGGATTCATGTCTCA
GTCCTTCCTCAAACATTTGCGAGCCAAGTCACCGGAGGTGTAAAAAAATT
GGAGTGTGTAGTGGCGAGCAGAAACAACGTTGTTCTTTGCCCTCCTCGCC
TATGTCGCGCGAGTTGAAAAAATCAGAGGCGTGTGTGATCACGAGCAGAC
AGAACTCGGTTCCGGCTGTTGTCGCTGCTTCCTCTAGTGTGTGCGGTCGT
CCCCATCTATTCTGGCGCCAGTCTGCGCAACTTTCGGTGTACCAGGCACA
AGCGTCGACAAAAATTCCGGTGTCACATAGGAAAAAGGTCAT back to topprotein sequence of EsuBft981_9a-0001 >EsuBft981_9 ID=EsuBft981_9|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MAPTGRWNRMWFVLVITFVTLLSSHADAARLGGEGVALTRSGDVLSADGS
TQEEYEVRESDPITAHFISLGSAAQKLLNKSGYAFGSLVRISHSDRDKEY
GEGPERTAWFPMVVFLDVFEEGSGDNGEDMTARYEVALDFHPKTIAAPGL
VVLAAWKINTDGGVAAKLDVLPAEEKGFLEKNRPGITMMFGVIIASGIVK
FLRRGLERLVKKAKADRQEGTATAAPATEAEPSVAAARGKGAENPKKKKE
GGNNVKQD back to topmRNA from alignment at Scaffold_347:317458..323255+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft981_9a-0001 ID=EsuBft981_9a-0001|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5798bp|location=Sequence derived from alignment at Scaffold_347:317458..323255+ (Ectocarpus subulatus male Bft15b)
CCCCTCTTGCAGAGTTGCGAATCTGTCGATCAACCGACGGAGCAGCGAGC
AGCGGAGTAGTCGCTGCTGCTGCTTTGTTCTGCGCAGCTGCCAAAACGCA
CGATATGGCGCCAACAGGTCGATGGAACAGAATGTGGTTCGTGCTCGTGA
TAACTTTCGTAACGCTGTTGTCTTCGCACGCTGATGCTGCTAGGCTTGGG
GGAGAAGGTGTCGCGCTCACCCGATCCGGGGACGTCCTCAGCGCGGATGG
AAGCACTCAAGAAGAGTACGAGGTACAGCAGCATCACACTACAGCAGTAG
TGCGCCACAACTGTAGCGTAGGGTACATGGCGAAGTGTAGAGTCTGATCT
TCCCAGGTCGGCGTCTCCCTCCTCGCTGATGTTGTGGGGTTCATTGGTTT
TGCTGAGGCACACACTCTCTCCGTGATCTCAACTCAGTCATGGACCTGTC
GAGCCTGTCTGCCGAAAAGGTTCGAGGAACGAGATGCGTTCCAGCAGCAG
ACATGATGATGTTCTTCGTTTAGGAACAATTTTGAAAACGCCCAATTGAA
TACGTCAGTCCCTCCAAGCGTTCACTGGAAGCCGCCATCCAAGCCTTTTC
GCTTCCAAGCAGTACCGGTGTGCGAGTGGAATGTGGCACCCTGTGTCCGT
GGAAATCGCCGGCAAAGAAGACAAAAGAGTAGTCTATATTGTTCGAATCG
GCAAATAGGTCGACGGCGCTGCACCAGCATCAGTTTCACACCGCCTTCTT
CCGCACAGGTCGTTGTGCGGAAGTCTATCGACGCGTATGCGTATCAACAC
CGCCATTAGGCGCGACGGCGCGGGTGTTCGTTCCCGTGAGAAAGGAAGAC
CTTCCCAACCCCACGAGCATACTAGCATAGCTCTTTACCCACAAGGAGAC
GCTGCTTTCTGGTGCCTCCTGCATACATTGGGGGCCTCTGCCCGGGTGCT
CGTTTCCGAACCACACCGCCGCCGTTCGAAGGGTTTTGGTGTTGTCCCTG
CGTAACGGGGATGCCCCTTGGCGTGCATGTGTGTGCATTTGTCGGTGTGG
TGTATTTACGGCTGTCACGAGTTTTTTCCAGGCCTTGTCCCTTTGGTAGA
CCGTTGTTCAACGACTTGGAACACCCCACAAAGGCCCGCGCGTTGACTGC
TGCATACCGCATCACAAGTGTTGCTTTACTTGTAAACATGGAGGCCCTAC
AAACAAGTCCAGCAGTAGTTGGGGGCGGCTTTCAGAGACTTCAGTTTCAG
GTCAAGTCCCCGTCCGCGTGAAAATCGCATCCGCCACCGTGGATCATGGG
CTACTGCTGTACGGGGCGCAGCATGGCATCCACCGCTGAGGTGTGCACGT
TCGGTATTTTCTTTTGTTTCCTACGAATCCGAACCAATTTTCGGCACGGA
AGCCTCTTTTGGACCCACACGCAGCTTTGCGCCCCCGACTGCACACCAGT
TTTGTAAGCCCGCCCCCCCCAGATTCCCTCGAGGTGGTTACACATAACTG
CCTCTGGAAGTGAAAGCGAAAGAAAATAGAAATAAGTCATTCGCAGCAGT
CATTCGTATGCAAGGATTTTGCACAGGATGCCAAACACCCTTCGCAAGAT
GCAGCGCACCCTCGATGAGCCTCGCCGAATATCTCACGGCGCTTCGCGCT
TGGTGATGTGAGAGGCTGGTCCCGTGAGAACCCGGCGTACTCCATCCCGG
CGTTGTAGGTATGCGAGGTAACTGGTCTAACGACTACGGCATGCGCGACT
ATGAGTACACCCCCCCCGGATTCCCGTTGTGCTCCGATAGGGATGCGAAG
TCAATGGCCTGACGACAACGGCATGCACGGCTATGAGCAAAACACACACA
CACACACACACATACGATTCCCTCGAAACTGCCGGTGTTCCTTGTCTGTT
CTACGGTTACTGTGTGTTTTTTTCTTGGACAGGTGCGGGAATCGGATCCT
ATTACGGCTCACTTCATCTCGTTGGGCTCGGCAGCGCAGAAGCTGCTGAA
CAAGTCGGGTTACGCCTTCGGTTCCCTCGTTCGGATCTCACACTCAGATA
GAGACAAAGAGGTGAAAGGTCCTATGAATTCGGCGTACGCTGTGCCTCTG
TGCACGTGAAACGGTTTCGTATTGGACCCACACGGCACGTTGGCCGCAGC
TATTGGCGCGGGTGGGAAAATGTGAGTTGCATACGACGCCACACACCTCT
ATTGGAAAAAGAGTGACCATGCCGAAATAGGCGGCGTTGGAACCGTGTCG
TCGAGGGCGATCCATCAACCTACCATGTGGTTTTGGCGTCCCCTTCGTCG
TGGAACAACCGTGCTTTCGCGGTATGTTGTGCACCCGACGGTATTTACTT
ATCCACCACTCGCACAACTCCCCCGCTCGATTCACTCTCACAGTCGGGGG
TTTTTTTCTTCTTTTTTTTCAGTTGCCATGATGACATGTGTTTGATGCTC
AAGGTCGCACTAGTTGTTTAGCCGGGAGGGTACTGGCACACAAACGAGGG
GATGACAAATGTAGCCCGTGGGACTGCTTGCTCACTTTAACTGGACTGCG
TGTTGAGCCCGCGGCGCGGGGGGAGAGGGACAGCGAGTGTGGATAAATTG
AACGAGGATCGGCTATCGCTCGAAGGTGATTCGCTCTCGGACAGCACACG
CGAAAGAACGCATCAGGACGCGGTACTCGTGCTTTGCTGGCACGGGAGGC
ACGGGGGCCATTGGGATCGCGTACAAGGGAAACCCTTGCCGCCAGGAGAC
AGCTGCATTGGTGTTGCATTGCGTCGACGGCGGCCTACGTTACGGTATCC
TTCGAGACGACCGTCGATTGAAAGCAAAGAGAAAGCTCGCCGCAGCGACG
GTTGCTGTTATCATATCTACTGCAGTCACGACTGGGCAACGGCCGTCAGC
AGCAATTGGCGGTCGTTCCTGAAACCCTGCTCTCCTCATCTCTCGCTTTT
TGCTTGTTAACGGTGCTTGTTAATATATCTAGACATTGTCTGGTCCATTG
TGTCTTCTCAAGAACGGTCCTATTCTGATCACTGCTTGAATCCAAATCTG
ATAGCCGCTCGTTTTCTTTCCTTCTGGGTGTCGGCCGTCTCCACGCAACA
TCAACGACAACAACAACAACAACAACGACGACGACGACGACGACGACGAC
GACGACGACGACAACAGTACGGCGAGGGGCCGGAGAGAACGGCGTGGTTT
CCCATGGTGGTTTTCTTAGACGTTTTCGAAGAGGGGTCGGGGGACAACGG
CGAAGACATGACGGCGCGGTACGAGGTAAGCCGTAGGCACAGCTGCGCAG
GCTTCCGCTGACGCTATCTGGCGTGTTTTACACGTTATGTTCCTACTGGC
CGTCTTCGGTTGTGCTTCAGTCACCATCGAGCCCCCCCCCACCCCATCTA
TCCCTCTGGTTTACGAGTCGAACTCTTGAATTTTTTTCTGTTGGGGTACA
TATATGTAGTTGGCCTGTGACCATGGAAGATGTCCGCGTCGGAACGTGGT
ACTGAGCAGAGACCGAAAAGGTTTAATTTTGAAGGGAAACAACAAGAATA
ACAAGAGCAACGACACAATTGTGACCCGCAGGTGGCGTTGGATTTCCACC
CGAAGACAATCGCCGCTCCGGGGCTAGTGGTCCTCGCGGCGTGGAAGATC
AACACGGACGGTGAGATACACCTCCTCGGCGAGACGTCGGCAAGCTCGAA
ATGCTCGGTAACTTTGTGGTCCTCGAGAAACTCCGAGGTCTTTCGGTTGT
TCAGGTACTCGACCGTACGAGGGATGATACGCTAACGTGAGCGCTTTCTT
CCGGGGTCGGTGGCCCTTTTTCAGTTTTGTTGTTTTTTGCTGCCGCTGCT
GATGTAATCGAGGCGAAGCTTGTCCATCCTGTTTTTTTCCGAAGGAGGAC
GCAGGATCAGAATGAATAGACAGAGGCCGTGTAGAACCAAAGCCAGCGGT
TGTTACTCTACGTTCAGCGGGTCCGTGAAGCAACAACTGCAGAGGGCCCT
GGCGACATCTGAACCCGCTTTTCCTCCTGTACCACAGGAATTCGTTGTGC
GTCGGCTTGGTCTCCTCAACACTGTTTGCCATGGCGTGCGCCCGATTCTC
TCCCTCTCTCTGTCTCTCTCTCACCTTCTCATTACCTCTCACTTGTACTC
TCCGCCGCTCTCTTCCTACTCCTTCTCCCCCCTCTCCCCCCCCCCCGCCG
CCACTTCGACAGGGGGCGTGGCGGCTAAACTCGATGTTCTCCCGGCGGAG
GAAAAGGGGTTCCTGGAGAAAAACAGGCCGGGGATCACCATGATGTTCGG
CGTTATCATCGCGTCCGGAATCGTCAAGTTCCTCAGGTGCGTGGCCAAAT
CAAGACGCGTTGTACTTGAATGGTAACAAGGATCGCCGCACGCACTATGA
GACACAGGTCAACCGAGTGTTGCGACAGGGTTCTTCGTTTTCGGAACGAC
TTGTGGGAAACTCCGGGTTCCGTTGGAAAACGGCGATGCCCGACGGAATT
CCACCAAATCGCCCCGCACACTAGGCGCCAGATTTTGTTCAGTGCCGTCC
GACGCCACTCACGCCAATGCCACCGTGTAACAACGACGTCAAAGGGCAGA
GTATGCAGTGCCTACTCTTGGCCTTGGAAAAAATATTGGAAAAATATCGG
GAAATGATCACCGATTGCGTTGGCCAGAGGTGGGTATTTTCACTACTAAA
ATAGTGTGGACGACTATCGAGGTTATTCTTCGTAGAGTCCCCCCTCGGCA
CGGTTTTGTTGTACACTCGTATCGACCTTGCGCTCGATCGCATGGTGCAT
CTTCGAAGGGCGTTGGTTGTCGCTGCTTCTCTTGTACGGCGCATCCCAGA
AGGCCAGGAGTGATAACGCTCAAGGATGACCGCCTCGTCAACAATCCCAT
CACCCTCTGTCCCCCCTCCGCTCTCCCTCTCTGCGCGGAAATATACCACG
GCTTGTGTACCCAAGCAGACGCGGTCTCGAACGGCTCGTGAAGAAGGCTA
AGGCAGACAGGCAAGAGGGAACGGCAACCGCAGCGCCAGCGACGGAGGCA
GAGCCGTCGGTAGCGGCGGCACGAGGAAAGGGCGCCGAAAATCCCAAGAA
GAAAAAGGAAGGCGGCAATAACGTCAAGCAAGACTGATCTGCCCAGTGTG
TTCATAAGTAGTCTTGTCGGGGAAACACCAACGATCTCGTAGGTACCAGC
GTCATGTAGGTGTACGTGTACCTGTACCTTTTGTGTTCTTCTTGACATGT
CATCGGCCGCGCTAACCGGCTGACCAGTGAAAAGTGTTTTGCGGGGTAAA
ACAAGCGAAAAAAATGTTTTTGTTCCCTGACGGGGGAACGCGGGACGCGC
GGAGGAGATTGGACGATAGGGCATGTGTGCGCCCCGCGTGTCTCAAATAT
GCATAGGATTAGTATTTCACAATCTTTGACGTATGTTGTTTTACTATTTA
CCGGCAACGTAGGGTACGTCGGTTGAGAAATGATATGTTTGTGGATTCAT
GTCTCAGTCCTTCCTCAAACATTTGCGAGCCAAGTCACCGGAGGTGTAAA
AAAATTGGAGTGTGTAGTGGCGAGCAGAAACAACGTTGTTCTTTGCCCTC
CTCGCCTATGTCGCGCGAGTTGAAAAAATCAGAGGCGTGTGTGATCACGA
GCAGACAGAACTCGGTTCCGGCTGTTGTCGCTGCTTCCTCTAGTGTGTGC
GGTCGTCCCCATCTATTCTGGCGCCAGTCTGCGCAACTTTCGGTGTACCA
GGCACAAGCGTCGACAAAAATTCCGGTGTCACATAGGAAAAAGGTCAT back to topCoding sequence (CDS) from alignment at Scaffold_347:317458..323255+ >EsuBft981_9a-0001 ID=EsuBft981_9a-0001|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=777bp|location=Sequence derived from alignment at Scaffold_347:317458..323255+ (Ectocarpus subulatus male Bft15b)
ATGGCGCCAACAGGTCGATGGAACAGAATGTGGTTCGTGCTCGTGATAAC
TTTCGTAACGCTGTTGTCTTCGCACGCTGATGCTGCTAGGCTTGGGGGAG
AAGGTGTCGCGCTCACCCGATCCGGGGACGTCCTCAGCGCGGATGGAAGC
ACTCAAGAAGAGTACGAGGTGCGGGAATCGGATCCTATTACGGCTCACTT
CATCTCGTTGGGCTCGGCAGCGCAGAAGCTGCTGAACAAGTCGGGTTACG
CCTTCGGTTCCCTCGTTCGGATCTCACACTCAGATAGAGACAAAGAGTAC
GGCGAGGGGCCGGAGAGAACGGCGTGGTTTCCCATGGTGGTTTTCTTAGA
CGTTTTCGAAGAGGGGTCGGGGGACAACGGCGAAGACATGACGGCGCGGT
ACGAGGTGGCGTTGGATTTCCACCCGAAGACAATCGCCGCTCCGGGGCTA
GTGGTCCTCGCGGCGTGGAAGATCAACACGGACGGGGGCGTGGCGGCTAA
ACTCGATGTTCTCCCGGCGGAGGAAAAGGGGTTCCTGGAGAAAAACAGGC
CGGGGATCACCATGATGTTCGGCGTTATCATCGCGTCCGGAATCGTCAAG
TTCCTCAGACGCGGTCTCGAACGGCTCGTGAAGAAGGCTAAGGCAGACAG
GCAAGAGGGAACGGCAACCGCAGCGCCAGCGACGGAGGCAGAGCCGTCGG
TAGCGGCGGCACGAGGAAAGGGCGCCGAAAATCCCAAGAAGAAAAAGGAA
GGCGGCAATAACGTCAAGCAAGACTGA back to top
|