EsuBft980_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft980_8a-0001
Unique NameEsuBft980_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:316532..318160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_007890-tr
ProteomeIdEsuBft980_8
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR19303
Protein domainsIPR007889
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR009057
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length95
Hectar predicted targeting categorysignal peptide
Evalue3.32e-25
EggNOG OGs2CXPE@1|root,2RYUX@2759|Eukaryota,39MS3@33154|Opisthokonta,3CPBT@33208|Metazoa,3E5GP@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft980_8aEsuBft980_8aEctocarpus subulatus male Bft15bgeneScaffold_562 316532..318160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_8a-0001-exonagat-exon-82767Ectocarpus subulatus male Bft15bexonScaffold_562 316532..316841 -
EsuBft980_8a-0001-exonEsuBft980_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 317518..318160 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_8a-0001-exonagat-three_prime_utr-23741Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_562 316532..316578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_8a-0001-cdsEsuBft980_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 316579..316841 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_8a-0001-exonagat-five_prime_utr-15462Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_562 318074..318160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft980_8a-0001EsuBft980_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 316579..318073 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft980_8a-0001 ID=EsuBft980_8a-0001|Name=EsuBft980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=953bp|location=Sequence derived from alignment at Scaffold_562:316532..318160- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTCCGTTAGCTTTCGTTTGAGCACCTCCGCGTGTCGATCGGGTCAAGCA
CTCCCGAGATACAGCACAGCCCTCACCCACACCCCTTATGTGGGGCATCT
TTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACGTAAGAGAGTAGAC
CCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCAGCGGTGAGATGTC
GCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTAGCCTCGCTGCACG
ACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGTTGGTCCCGGGACT
GTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACGTCTTGATCTACGC
CTCCCGACACTTCTTGCTGTTGGGTCGGAGGGAGCTGAGAGACGCTGTGC
GCAACATCTGCACCGACGGGCGCAAGGTGCCCTGGGACCCAGACAAGGGC
CCTGGGGACAGCTGGCTTGAGGGGTTTATGGCGAGACACCCGGGTTTGTC
GGAGCGAGCCACCCACATCTACGAAGCAAACCGGATTAACGAAGACGGCG
AGCCTCGCCTTCAAGCTTTCTACAAAGCATGGGCGGAGTACCTGGAGGAG
ACCAAGCTCCCGCCGGAACGCATCCTCAACACGGATGAGACAAGTTCGAC
CCCTCAAGGTACAAAGTCGGGGAAGGCAATCGTCGCAAGAGGCACCAAGG
TACCCGGCGCGAGGCGTTCCAATTCGCGAGAAAATACGACGGTGGTCGCC
ACCATCGGTGCCGACGGCCACACGTTCCACCCTACCATCATCTTCAAAGG
CCAGCGTATGCAACCCGCTTGGATCCAGGACAACAACGGCGTCCCCGATG
CGAAGTACACCGTCACGGAGTCATCCTTCATCCAGAGCCACGTCTTCCTG
GACTAGCTTCGAGACCTCCGCAAGCAGCTCGATGCGCGCGGCTTGCTGGG
CAA
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protein sequence of EsuBft980_8a-0001

>EsuBft980_8 ID=EsuBft980_8|Name=EsuBft980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPL
ASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRREL
RDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRI
NEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVA
RGTKVPGARRSNSRENTTVVATIGADGHTFHPTIIFKGQRMQPAWIQDNN
GVPDAKYTVTESSFIQSHVFLD
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mRNA from alignment at Scaffold_562:316532..318160-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft980_8a-0001 ID=EsuBft980_8a-0001|Name=EsuBft980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1629bp|location=Sequence derived from alignment at Scaffold_562:316532..318160- (Ectocarpus subulatus male Bft15b)
TTTCCGTTAGCTTTCGTTTGAGCACCTCCGCGTGTCGATCGGGTCAAGCA
CTCCCGAGATACAGCACAGCCCTCACCCACACCCCTTATGTGGGGCATCT
TTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACGTAAGAGAGTAGAC
CCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCAGCGGTGAGATGTC
GCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTAGCCTCGCTGCACG
ACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGTTGGTCCCGGGACT
GTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACGTCTTGATCTACGC
CTCCCGACACTTCTTGCTGTTGGGTCGGAGGGAGCTGAGAGACGCTGTGC
GCAACATCTGCACCGACGGGCGCAAGGTGCCCTGGGACCCAGACAAGGGC
CCTGGGGACAGCTGGCTTGAGGGGTTTATGGCGAGACACCCGGGTTTGTC
GGAGCGAGCCACCCACATCTACGAAGCAAACCGGATTAACGAAGACGGCG
AGCCTCGCCTTCAAGCTTTCTACAAAGCATGGGCGGAGTACCTGGAGGAG
ACCAAGCTCCCGCCGGAACGCATCCTCAACACGGATGAGACAAGTGAGTT
AGGGCAAGGGTTGAGGTGTCAGTAGGTGTCATTGGGTGTCAGCGGTGTCA
GTATCGACTGCTGTGGGTTCGTAGGCGAAGTACCAGCAGCACTGCGATGT
GTCACAACAACGCGGAGTTCTGCTGCTGCAAAAAAAAAAGATCCAGCAGT
TGTCCCGCATATCTTCCGAGCCGTTGCTGCTTGTCATGCGCGTAGCACAC
AACACGCCCGCATGTTTGCTGCTGGAGTCGGCTGAGGTTAGCATGTAACA
GTCCCTGTGGTCATCTCAGTTGCACTCTGCCGCATGATTGCATGTGTACA
TCGTTTTCTGTTGTGATGCTACCGGCAACAGCGGGCGTGTGTTCTTGGTC
TGCAAAATGCATGTGTGTTGCTGAACGACGCGCGAAGTGCAGACTAGTCT
AGTCACGTCGAGACTTCAGTAGAACGCTTTGTTTTTGTAAACCCACCTAC
GTTTGGAGCTCAATGCAAACTGCCATGGGTGTGGGGTTATTGTTTCGCAC
CCAAAGTTTAAACGAATCCGACACTTGCCGCACAAAAAATGGCCTTCACC
ACTGCTGTGTGCCACCACCCGGAGCGAGCAGCACCCATGTGTGTTTGTAC
GCGCGTTTTTTGTGTGTCTAGTTTACTGATTGTTCAACTGTCTTTACCCC
CGATGCGCGCGTGTTGTAGGTTCGACCCCTCAAGGTACAAAGTCGGGGAA
GGCAATCGTCGCAAGAGGCACCAAGGTACCCGGCGCGAGGCGTTCCAATT
CGCGAGAAAATACGACGGTGGTCGCCACCATCGGTGCCGACGGCCACACG
TTCCACCCTACCATCATCTTCAAAGGCCAGCGTATGCAACCCGCTTGGAT
CCAGGACAACAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCAT
CCTTCATCCAGAGCCACGTCTTCCTGGACTAGCTTCGAGACCTCCGCAAG
CAGCTCGATGCGCGCGGCTTGCTGGGCAA
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Coding sequence (CDS) from alignment at Scaffold_562:316532..318160-

>EsuBft980_8a-0001 ID=EsuBft980_8a-0001|Name=EsuBft980_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_562:316532..318160- (Ectocarpus subulatus male Bft15b)
ATGTGGGGCATCTTTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACG
TAAGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCA
GCGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTA
GCCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGT
TGGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACG
TCTTGATCTACGCCTCCCGACACTTCTTGCTGTTGGGTCGGAGGGAGCTG
AGAGACGCTGTGCGCAACATCTGCACCGACGGGCGCAAGGTGCCCTGGGA
CCCAGACAAGGGCCCTGGGGACAGCTGGCTTGAGGGGTTTATGGCGAGAC
ACCCGGGTTTGTCGGAGCGAGCCACCCACATCTACGAAGCAAACCGGATT
AACGAAGACGGCGAGCCTCGCCTTCAAGCTTTCTACAAAGCATGGGCGGA
GTACCTGGAGGAGACCAAGCTCCCGCCGGAACGCATCCTCAACACGGATG
AGACAAGTTCGACCCCTCAAGGTACAAAGTCGGGGAAGGCAATCGTCGCA
AGAGGCACCAAGGTACCCGGCGCGAGGCGTTCCAATTCGCGAGAAAATAC
GACGGTGGTCGCCACCATCGGTGCCGACGGCCACACGTTCCACCCTACCA
TCATCTTCAAAGGCCAGCGTATGCAACCCGCTTGGATCCAGGACAACAAC
GGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTTCATCCAGAG
CCACGTCTTCCTGGACTAG
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