EsuBft975_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft975_6a-0001
Unique NameEsuBft975_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_553contigScaffold_553:14134..18157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft975_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length102
Hectar predicted targeting categoryother localisation
Evalue2.27e-07
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft975_6aEsuBft975_6aEctocarpus subulatus male Bft15bgeneScaffold_553 14134..18157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_6a-0001EsuBft975_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_553 14890..15189 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_6a-0001-exonagat-exon-46338Ectocarpus subulatus male Bft15bexonScaffold_553 14134..14529 -
EsuBft975_6a-0001-exonEsuBft975_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_553 14857..15315 -
EsuBft975_6a-0001-exonagat-exon-46336Ectocarpus subulatus male Bft15bexonScaffold_553 17274..17394 -
EsuBft975_6a-0001-exonagat-exon-46337Ectocarpus subulatus male Bft15bexonScaffold_553 18112..18157 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_6a-0001-exonagat-three_prime_utr-23685Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_553 14134..14529 -
EsuBft975_6a-0001-exonagat-three_prime_utr-23686Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_553 14857..14889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_6a-0001-cdsEsuBft975_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_553 14890..15189 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft975_6a-0001-exonagat-five_prime_utr-15416Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_553 15190..15315 -
EsuBft975_6a-0001-exonagat-five_prime_utr-15417Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_553 17274..17394 -
EsuBft975_6a-0001-exonagat-five_prime_utr-15418Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_553 18112..18157 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft975_6a-0001 ID=EsuBft975_6a-0001|Name=EsuBft975_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1022bp|location=Sequence derived from alignment at Scaffold_553:14134..18157- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTTGGCGGGAGAGGCTCCAGGCGCTACATCCCCGTCGAAATAAAGGTTT
TGGCGGTGCTTCGCGTCCTGGGAAGAGGAAGCTATTTTGACGATGTCGCG
GAGGTCAGGGGCATGGGCGAGGCCATGGTGAACCGCCTGTTCCATTAGTT
CACGGAAAGATTCGCGCCTCCAGAGTCCGATCAGGGCGCCATCAAAAAAG
GCCAAGGCAGGATTCAAGAGGCAACTCGAGAGCGTCCGCCAGGACTCAGA
GTGCTGCTTCGGCGTCTTAAAGGGCCAGTTCAGAATTTTGAAGATGGGTT
TCCTCTACAGGAAGAGAGAGAGAATTGACAACATGTTCTTCACGTGCGTC
ATACTGCACAACATGCTTCTCGCCTACGAAGGGATCGAGCTGCTGGAGGC
GGACTGCGACTGGGCCGGAGCGGACGGCAACCTCGACAACCACATCGTGC
ACCCTGACGCGCGGCGGATGGCGATCACGCACGAGGCTGAGGTTGTGGAG
TGGGACGACGACTTCCTCGAACTGAGGCAGAAGTTGGTGACCAACTTTGC
TTACCGATGGGGGCAGGGGACCGTTGGGTGGAAAAGGTCGTGATGGACTC
TTGGCAAATCACATATTGCTATGTAGGTGTCCTTTGGCGGGGAGCTGGGG
GTGGGGGCGTGATGACGGCGATGTCCGTCCCTCCGACTTTACGTTAACTT
CTGGGTCCTCTATGATTTGAGTTTAGTTTCGCTGGAGGGTGGGCGGTCTC
GTGTGGTCGTTACTTTCCCCGCTGAGCTATGAATTGGGTACGATGGCGCC
AAATCACTTCGCCTCTGGATGTAGGTTTTTCTGTACGTCGTCTTTCGAGT
GCGTGTTTGTCCCCAGAAGTTCTCTGGTATGTGGAATCCCAGTCTACTGG
CAGTATTTTGGAATCTTGCCCTGAGTGTAGCAATTGAATGTGGTCGTGGT
TTTGACTCACGTTTGTGCCGGAGTAATCGCCGCTCTTTGCGCAACACGTT
TCCGACCAGGTTTGTGGTGCGA
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protein sequence of EsuBft975_6a-0001

>EsuBft975_6 ID=EsuBft975_6|Name=EsuBft975_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=99bp
MGFLYRKRERIDNMFFTCVILHNMLLAYEGIELLEADCDWAGADGNLDNH
IVHPDARRMAITHEAEVVEWDDDFLELRQKLVTNFAYRWGQGTVGWKRS
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mRNA from alignment at Scaffold_553:14134..18157-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft975_6a-0001 ID=EsuBft975_6a-0001|Name=EsuBft975_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4024bp|location=Sequence derived from alignment at Scaffold_553:14134..18157- (Ectocarpus subulatus male Bft15b)
GCTTGGCGGGAGAGGCTCCAGGCGCTACATCCCCGTCGAAATAAAGGTGA
GCAAACACGCGCGTGTACCCTAGCGTGGGGTGCTAAGCAAGGCAGCATAT
ATCTATATATAGAGAGATGGATGATGGCAGCATTGGGTTTGGGCTCTGCA
ATAATTTAACTACGTACATGAACAGACGAAGGAACTTTCCCCAAGCAGGT
AGGTAGATGGTACCTTGCTGTTGCACGTCGCATCGCAAGACGCGTAGACT
ACTCGGCACAGTCCGGGCACGTACAGAGCGCACCTGCTTCTGGAGGCAGG
GTGCTGGCTGTGACTGGGGCTCGTCTCATCACACACACTCTCCTACACTT
ACTTACAGTCACGAGGAACAGTAGTTCCATCGCTGTCCTCTGCGGCATGT
ATGTAGACTATGATATTGCATGCGAAGTTTTGCTGTTGCCACCCGGATAT
TGTGAACGCCATCCCGGCGGTGGTACTACCCTACGGCTCATGTAGAGCAG
ACTCTCCCCATCTCTTCGGAAACAGAAACCGTATGTATGTATTCTCCTTT
CAGTCTCGGATGTTCTCTCTGTGACTGATGCTCGTAGCTCACTTGCAGTG
TTGCTCCAAAACAGGACGAACTCTTTTTACTTCGCAAGTTGGATACGCAT
TAGTCACACATCCTGCACTGATGACCTGTGTTCACGCTGCTGATCACAAC
GTCTAGTTCTGCACAACACGAATCGTCTCCCCTAACCGCTGTTTTTTTAC
GGTTTCCTGACAGGTTTTGGCGGTGCTTCGCGTCCTGGGAAGAGGAAGCT
ATTTTGACGATGTCGCGGAGGTCAGGGGCATGGGCGAGGCCATGGTGAAC
CGCCTGTTCCATTAGTTCACGGAAAGATTCGCGCGTGAGTTTTTCCGGTG
TGGGTGCGCATGCCGAATGAAGACGAGCTCAAGGAGATCATGAAAGCATA
TGACGAGGTCGGAATGTCGGGTGCCATGGGGTCGATGGATGGGACGCACA
TTGAGTGGACGGTGTGTCCTTATTCCAAACGCGCGTCGTTCACGGGCAAG
GAAGGCTACCCTACCATAGTGTACAACGTCGCCGTCAGCCACGACATGCG
TGTTTTGTCGTGTACGCGNTCGTCGCCGTCAGCCACGACATGTGTGTTTT
GTCGTGTACGCGGGGTTTCCCCGGGGCACAGAACGACAAGTCCATCATCA
AGTTCGATAAGTTCGCGATGGCGGTTCGAGACGGCTGGTACAAGGACGTG
GAGTACACTCTGAAGGGTTAGGACGGAGAGGATGTCAAGGAGAAAGGGCC
ATGGTTGATAGTGGACGGCGGATATCACAACGTGAGCGGGCCCGTGTTTT
GCACAACGGACAACAGGCAGTAGTGCCGATTTTCTTTCTCTTCATCCGGT
GCGCGCGGATGGGTTGGTGTTCAACTTAAATTACCAGGAATAAACGTACG
TGTAGGAACACGAGACAAACGATCGCGTATCAACGTGTCTTCCATAAAAG
GATGGTATGCCCATGTCATCTAGTTTGATTTGTTTTCTCCAAGTGCTGTG
TCACGGAACGTTGTTGTTGTTACTGTTTTTGTTGTTGGTGGTGGTGGTGT
TGTTGTTTTCACATCAAAAATCGCCCCGGTCTCTCTATCCAGTACCCCCT
TCTGTCCCAATCTCTGCGTGCTGATCTAACACTATCACTTCACGCGGTCA
ATTCCCGTGGTCACAGGCTAACTTGCTACCCAACAGGAGGTATACAAAAA
ATAAAATGGAGACCCGAACGGAACGTTGCTGTTGTTTTATTTCGGGAGTG
CCTTTCATGTGTATAATTGCACCCGTTCGCGTCTGTAGTTTATCTTGTTC
GCTGGTTCGGTTAGGTGGTGTTTTTTTTTTTGTGGATGATAAGCAAAACT
ACGGTACGCACTAGCATGGACAAAAGCCAGTGACGCCCAGCGGGGCGAAA
ATGCCGAGACCCCGGGTCTTAATCTTTTTTGTAGGGGACGAGACTTTGCT
GATGCGTGAAGACTTTGTCGAATCTTGCGGCTAGTAACTCAGGAGTTCGG
GCTGCTCTCTAGGTCTGTATGTTTGTGTGGTCCTCTATCCTCTGTCATGG
TTTTCACCTCTTCATTGGATACACTTCCTGCGACAGGCTCCGTGAGAGAG
GAATTTTTTGTTCGGGAAATAAATGCGTAGTACTATAGACGGCTTTGTGG
CACCGTCTGGTCAGGCAGCGGAAAGTTGATGACCGAACACCTTGGTTGTG
TTTGGGTACCCGCAATTATTTTTTCCCGAACACCTTGTATGTGTAAACGT
TCTTGTCTGCCTGTCTGTACGCGAGTTCCGCAAGCTGTTGGCCCTTACCC
CGCCAGAACGCGTAGGTAGGTGGTGGGGGAGACTGAACCAGGTCCCCGCC
CCCACCTCTCTGTCCATTCGGTATTTCAAGGTCTTCGTCTCCGCGGAACG
TGATGGTAGTTGATGTGCACTATGCCATATTTGACGTTTAATTTGAACGT
ATGGTATGCTGTTCCGCGGTATTCTACTGGAGTTCCGATATGCGTCTTCA
AGTCATGTGTGGTACATCCGCCCTGGCATCCCTAACGTTAATCCCTATCG
CCCACTCACCCGCCATCAATCCCTCTTTGCTTAGTGGAGGCAGCTCCAGA
GTCCGATCAGGGCGCCATCAAAAAAGGCCAAGGCAGGATTCAAGAGGCAA
CTCGAGAGCGTCCGCCAGGACTCAGAGTGCTGCTTCGGCGTCTTAAAGGG
CCAGTTCAGAATTTTGAAGATGGGTTTCCTCTACAGGAAGAGAGANTCGC
CCACTCACCCGCCATCAATCCCTCTTTGCTTAGTGGAGGCAGCTCCAGAG
TCCGATCAGGGCGCCATCAAAAAAGGCCAAGGCAGGATTCAAGAGGCAAC
TCGAGAGCGTCCGCCAGGACTCAGAGTGCTGCTTCGGCGTCTTAAAGGGC
CAGTTCAGAATTTTGAAGATGGGTTTCCTCTACAGGAAGAGAGAGAGAAT
TGACAACATGTTCTTCACGTGCGTCATACTGCACAACATGCTTCTCGCCT
ACGAAGGGATCGAGCTGCTGGAGGCGGACTGCGACTGGGCCGGAGCGGAC
GGCAACCTCGACAACCACATCGTGCACCCTGACGCGCGGCGGATGGCGAT
CACGCACGAGGCTGAGGTTGTGGAGTGGGACGACGACTTCCTCGAACTGA
GGCAGAAGTTGGTGACCAACTTTGCTTACCGATGGGGGCAGGGGACCGTT
GGGTGGAAAAGGTCGTGATGGACTCTTGGCAAATCACATATTGCTATGTA
GGTGTCCTTTGGCGGGGAGCTGGGGGTGGGGGCGTGATGACGGCGATGTC
CGTCCCTCCGACTTTACGTTAACTTCTGGGTCCTCTATGATTTGAGTTTA
GTTTCGCTGGAGGGTGGGCGGTCTCGTGTGGTCGTTACTTTCCCCGCTGA
GCTATGAATTGGGTACGATGGCGCCAAATCACTTCGCCTCTGGATGTAGG
TTTTTCTGTACGTCGTCTTTCGAGTGCGTGTTTGTNTGGTGACCAACTTT
GCTTACCGATGGGGGCAGGGGACCGTTGGGTGGAAAAGGTCGTGATGGAC
TCTTGGCAAATCACATATTGCTATGTAGGTGTCCTTTGGCGGGGAGCTGG
GGGTGGGGGCGTGATGACGGCGATGTCCGTCCCTCCGACTTTACGTTAAC
TTCTGGGTCCTCTATGATTTGAGTTTAGTTTCGCTGGAGGGTGGGCGGTC
TCGTGTGGTCGTTACTTTCCCCGCTGAGCTATGAATTGGGTACGATGGCG
CCAAATCACTTCGCCTCTGGATGTAGGTTTTTCTGTACGTCGTCTTTCGA
GTGCGTGTTTGTCCCCAGAAGTTCTCTGGTATGTGGAATCCCAGTCTACT
GGCAGTATTTTGGAATCTTGCCCTGAGTGTAGCAATTGAATGTGGTCGTG
GTTTTGACTCACGTTTGTGCCGGAGTAATCGCCGCTCTTTGCGCAACACG
TTTCCGACCAGGTTTGTGGTGCGA
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Coding sequence (CDS) from alignment at Scaffold_553:14134..18157-

>EsuBft975_6a-0001 ID=EsuBft975_6a-0001|Name=EsuBft975_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=300bp|location=Sequence derived from alignment at Scaffold_553:14134..18157- (Ectocarpus subulatus male Bft15b)
ATGGGTTTCCTCTACAGGAAGAGAGAGAGAATTGACAACATGTTCTTCAC
GTGCGTCATACTGCACAACATGCTTCTCGCCTACGAAGGGATCGAGCTGC
TGGAGGCGGACTGCGACTGGGCCGGAGCGGACGGCAACCTCGACAACCAC
ATCGTGCACCCTGACGCGCGGCGGATGGCGATCACGCACGAGGCTGAGGT
TGTGGAGTGGGACGACGACTTCCTCGAACTGAGGCAGAAGTTGGTGACCA
ACTTTGCTTACCGATGGGGGCAGGGGACCGTTGGGTGGAAAAGGTCGTGA
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