Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft96_25 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 300 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft96_25a-0001 ID=EsuBft96_25a-0001|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3003bp|location=Sequence derived from alignment at Scaffold_576:862169..865330- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AACCCCTCGTCACGGTAGACCCTGCCGCATCCGTTGATGTGTCACGCCCC
CACGGCCAACGGCAGCCAGCTCTCGCTAGATCAATGCGACGAGATCCTGT
CCCCGTTCTTTAAATCAGCACCGTCCGGCCGGGTAGCAGTAGCGGCAGCA
GCAGCCGCAGCAACCACCGACGAAGAAGCAGCCACATATCCCCCCGGCCC
ACAAGGCGACCGACATCGAGACCGACAAGCCATGGCAGACCCTCGGGGTG
ACTGCAGCCCTGGCGGTGCTAGTGGGGGTGCACCGACAAAGTTAGGTGAA
GTGGATCCTTGTTCCCGGGGCGATACAGCAGTAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGATAGCCCAGCCCCCGAGGCCAACGCGATCCCTAGCG
GGACTTCCCATCGCCCCCGAAGAGGTAGCAAACGCTCCCGAAAGAAGATT
CGCTTCACCGGGGCAATGGGCCAGTTTTTGGACGGACGGGGGGTTTGGAA
CGACTTTGCTGTGATGGAGGCCGAGCGAAAGGCGGGCCTAAATATGCCGC
AGTTTCTGCAGCAGCCAGACCACCAGCAGCAGCACAATCAGCAAATCCAA
AATATGCAGCACGGAAAGGGGCAGCACGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGTTTCAGGGAACGAGGGTAGGGAGGGAGGCACGAGTGAGG
AGGATCGAAATGCAAAGGATCAGGGGCGAAAGGGAGCGCCGTTGGACGGA
GGGGGCACGGGTAGCGGCAGCGAGGAAGCAACACCTTCTGACGACGTTGT
TGCCGATGGCATCAGCTGTTGGAGGTCGGCGGGCGGCATCACTACCGCCA
TCACGGAGGATCTGCACACCGTCGACACAGTACCGTCTGATACAGCGAAC
CCCGGCACGAGCACTGGAGACGCACCCCGTCTGCCCAGTCAAACAGCAGC
AGGAGCGGGGCAGCAGCAGCAGCGGCAGAGGGGTCCGTGACGCGGGGGTA
GAAGAGACGGTGATGGAATAACTGTTGTGGGCGCGGGGGTCTGCCAGTTG
GAGCTTGGGGCGCCTGGCACCACCAATAAACTTCTGTAAATACCAAGGAT
GGGAACAGGGCTGCAAAACACACTGGTAGGTTGGCCTGTATGAAAGTTAG
TTGCCCTTACGGCACCGGGCGTTGGATTTATGTATAATGGGACGGGAGGG
GGGGTCATGTTGATAGGGGTGACAGGGTGTCATTGGTCTTTTGTCAAGTA
TCAGTATCCATGCCAGCAGGCGTTTTGTAAATGCCAAACCAACCAGCGGG
TTCGAAAGTTCCCGATTGTTAGAGAGGAAGGGAGAGAGAGACTCGAGAGG
AGAGTGAGCCGGCAGGAAGAAAACGGTTGATAATTGGTGTAGAGACTGGG
GGCTAGCTGGCTGTGAACAGATAAGATTATGGTACTTATATTCAAAATTG
TTCTCGTTCAGTGAAGTGGGTGTTTTGACGATCACAAGAAAGAGACAAGA
GAGGGTGGAGGTAACCTACTCGCAGTGGTGACAGTAGTCTGTCAATTTCA
CTTCCAATTCAATTGCGTTGTATTCGAGAGTGTGATTCTTTGGGGGCGGG
GTTTGATGTAGGGTACCCGAAGAAGAGATGTTTGTGTTGACGCCTGCATG
TGTGTGCGCACGTGAAAGACACGGGAAGCTAGTATACCAGAAACCTGAGT
GAATTGTGGAGGCCAGCTCTTTTGATGACTTGCCATTGGTTGGCTGCCGT
AGGTGGCTATCTTATCGCTGAACGGCTTCTCTTCTCTTCTGCTACGCTAC
CTCGTGTGTGTGTGTTTTTTATGTTTTCCGTGAGATGCCGGAGTATTGCA
GCTGCCTGTTTCTCTGTCTCGCGACATTTTGGTGGTTGGTTGTACTCGGG
AGAAAGCGTGTCACTAGTCGTTTCAGCGAAACCTGGGTGTGGGGAAGCCA
CAACCGACACGTGATATAGCACCGTCTCACTGAGTGCAAGTGGTTCAAAA
CAGAAATCGTGCGGCCCTGCGCAGTCGTTCTGCTGTTGTTGCATGGCGTA
GTCCCGTAATTGGAGAGCTGCACATTTCTTTCGATAAGCAGGATTGCTTG
GTAGGAGGGGGGTGGGCTGTGGGGGGGGGGGGGAGAGCAGCATTTTACAC
TAGCAGGCGTTTTTGGGGGATGGGATAAGGAGGGGGAGGGATCACGGATC
ATGCCAGTGCTGCTGTAAAAAGGGACGGCCTCGTCTTTGAGATGGCAGTG
TAGTGTTGCGTCTACAGGCGTTTTTGGGGGATGGGATAAGGAGGGGGAGG
GATCACGGATCATGCCAGTGCTGCTGTAAAAAGGGACGGCCTCGTCTTTG
AGATGGCAGTGTAGTGTTGCGTCTACAGGTGAGGTCATGTGGTAAATGAT
CAACATTCGAATTTCTTTGGCAAGCACGCTATTTAATAAAAAAATCCGTT
ACACACGGGTAAAGAGAATGTTGTGAAAGCATAACCTCGTGCTAGCGTTG
GTTATAAAGGATACGTATGGGACTGTGCTTGGTTTCGTTTGGTGTGCGGT
AGCGCTGAAGCTCACGATGATGGTGTCTAGTGACCACGACTTGGGGTATG
TTTTTGTGCGGCGGATGATTTTCGATGTGTGCAGGTCCGATACCCCAATG
TTGACGTGGTTCGTCGAGGAGGCCAGCTGTTGGCCTTTCCGTGTGAAATT
TTCGTGCGAGCGGTGGGAAACGGAGTTCATGATAGTATAAATAATTTTTT
CTTGTTCATGTTTGTTGTGTCTCGTGTCGTTGTGAAGGGCAGCCGGTTTT
TCGGTTCGCCGTGCCCCTGCCCTTGCGAATACCTAGGAGCGCGGCCATTC
GCTCGACGGTTGTGTCCGAGCTTTGTACGGGTGGGGGGCGGCGGCGATGA
CTTGGTTTGGCCTTTGATGGCATACTTCCGAGGGGTGTTGCTCCTCTGGG
GCTTCACAATGCTGTCAAATAACTCGAACAGTTTCAAAAAGTGTGTCTTT
TTT back to topprotein sequence of EsuBft96_25a-0001 >EsuBft96_25 ID=EsuBft96_25|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MCHAPTANGSQLSLDQCDEILSPFFKSAPSGRVAVAAAAAAATTDEEAAT
YPPGPQGDRHRDRQAMADPRGDCSPGGASGGAPTKLGEVDPCSRGDTAVA
AAAAAAAAADSPAPEANAIPSGTSHRPRRGSKRSRKKIRFTGAMGQFLDG
RGVWNDFAVMEAERKAGLNMPQFLQQPDHQQQHNQQIQNMQHGKGQHEEE
EEEEEEEEVSGNEGREGGTSEEDRNAKDQGRKGAPLDGGGTGSGSEEATP
SDDVVADGISCWRSAGGITTAITEDLHTVDTVPSDTANPGTSTGDAPRLP
SQTAAGAGQQQQRQRGP back to topmRNA from alignment at Scaffold_576:862169..865330- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft96_25a-0001 ID=EsuBft96_25a-0001|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3162bp|location=Sequence derived from alignment at Scaffold_576:862169..865330- (Ectocarpus subulatus male Bft15b)
AACCCCTCGTCACGGTAGACCCTGCCGCATCCGTTGATGTGTCACGCCCC
CACGGCCAACGGCAGCCAGCTCTCGCTAGATCAATGCGACGAGATCCTGT
CCCCGTTCTTTAAATCAGCACCGTCCGGCCGGGTAGCAGTAGCGGCAGCA
GCAGCCGCAGCAACCACCGACGAAGAAGCAGCCACATATCCCCCCGGCCC
ACAAGGCGACCGACATCGAGACCGACAAGCCATGGCAGACCCTCGGGGTG
ACTGCAGCCCTGGCGGTGCTAGTGGGGGTGCACCGACAAAGTTAGGTGAA
GTGGATCCTTGTTCCCGGGGCGATACAGCAGTAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGATAGCCCAGCCCCCGAGGCCAACGCGATCCCTAGCG
GGACTTCCCATCGCCCCCGAAGAGGTAGCAAACGCTCCCGAAAGAAGATT
CGCTTCACCGGGGCAATGGGCCAGTTTTTGGACGGACGGGGGGTTTGGAA
CGACTTTGCTGTGATGGAGGCCGAGCGAAAGGCGGGCCTAAATATGCCGC
AGTTTCTGCAGCAGCCAGACCACCAGCAGCAGCACAATCAGCAAATCCAA
AATATGCAGCACGGAAAGGGGCAGCACGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGTTTCAGGGAACGAGGGTAGGGAGGGAGGCACGAGTGAGG
AGGATCGAAATGCAAAGGATCAGGGGCGAAAGGGAGCGCCGTTGGACGGA
GGGGGCACGGGTAGCGGCAGCGAGGAAGCAACACCTTCTGACGACGTTGT
TGCCGATGGCATCAGCTGTTGGAGGTCGGCGGGCGGCATCACTACCGCCA
TCACGGAGGATCTGCACACCGTCGACACAGTACCGTCTGATACAGCGAAC
CCCGGCACGAGCACTGGAGACGCACCCCGTCTGCCCAGTCAAACAGCAGC
AGGAGCGGGGCAGCAGCAGCAGCGGCAGAGGGGTCCGTGACGCGGGGGTA
GAAGAGACGGTGATGGAATAACTGTTGTGGGCGCGGGGGTCTGCCAGTTG
GAGCTTGGGGCGCCTGGCACCACCAATAAACTTCTGTAAATACCAAGGAT
GGGAACAGGGCTGCAAAACACACTGGTAGGTTGGCCTGTATGAAAGTTAG
TTGCCCTTACGGCACCGGGCGTTGGATTTATGTATAATGGGACGGGAGGG
GGGGTCATGTTGATAGGGGTGACAGGGTGTCATTGGTCTTTTGTCAAGTA
TCAGTATCCATGCCAGCAGGCGTTTTGTAAATGCCAAACCAACCAGCGGG
TTCGAAAGTTCCCGATTGTTAGAGAGGAAGGGAGAGAGAGACTCGAGAGG
AGAGTGAGCCGGCAGGAAGAAAACGGTTGATAATTGGTGTAGAGACTGGG
GGCTAGCTGGCTGTGAACAGATAAGATTATGGTACTTATATTCAAAATTG
TTCTCGTTCAGTGAAGTGGGTGTTTTGACGATCACAAGAAAGAGACAAGA
GAGGGTGGAGGTAACCTACTCGCAGTGGTGACAGTAGTCTGTCAATTTCA
CTTCCAATTCAATTGCGTTGTATTCGAGAGTGTGATTCTTTGGGGGCGGG
GTTTGATGTAGGGTACCCGAAGAAGAGATGTTTGTGTTGACGCCTGCATG
TGTGTGCGCACGTGAAAGACACGGGAAGCTAGTATACCAGAAACCTGAGT
GAATTGTGGAGGCCAGCTCTTTTGATGACTTGCCATTGGTTGGCTGCCGT
AGGTGGCTATCTTATCGCTGAACGGCTTCTCTTCTCTTCTGCTACGCTAC
CTCGTGTGTGTGTGTTTTTTATGTTTTCCGTGAGATGCCGGAGTATTGCA
GCTGCCTGTTTCTCTGTCTCGCGACATTTTGGTGGTTGGTTGTACTCGGG
AGAAAGCGTGTCACTAGTCGTTTCAGCGAAACCTGGGTGTGGGGAAGCCA
CAACCGACACGTGATATAGCACCGTCTCACTGAGTGCAAGTGGTTCAAAA
CAGAAATCGTGCGGCCCTGCGCAGTCGTTCTGCTGTTGTTGCATGGCGTA
GTCCCGTAATTGGAGAGCTGCACATTTCTTTCGATAAGCAGGATTGCTTG
GTAGGAGGGGGGTGGGCTGTGGGGGGGGGGGGGAGAGCAGCATTTTACAC
TAGCAGGCGTTTTTGGGGGATGGGATAAGGAGGGGGAGGGATCACGGATC
ATGCCAGTGCTGCTGTAAAAAGGGACGGCCTCGTCTTTGAGATGGCAGTG
TAGTGTTGCGTCTACAGGTGAGGTCATGTGGTAAATGATCAACATTCGAA
TTTCTTTGGCAAGCACGCTATTTAATAAAAAAATCCGTTACACACGGGTA
AAGAGAATGTTGTGAAAGCATAACCNGGGGGGGGGGGGGGGGGGGGGGGG
TGGAGAGCAGCATTTTACACTAGCAGGCGTTTTTGGGGGATGGGATAAGG
AGGGGGAGGGATCACGGATCATGCCAGTGCTGCTGTAAAAAGGGACGGCC
TCGTCTTTGAGATGGCAGTGTAGTGTTGCGTCTACAGGTGAGGTCATGTG
GTAAATGATCAACATTCGAATTTCTTTGGCAAGCACGCTATTTAATAAAA
AAATCCGTTACACACGGGTAAAGAGAATGTTGTGAAAGCATAACCTCGTG
CTAGCGTTGGTTATAAAGGATACGTATGGGACTGTGCTTGGTTTCGTTTG
GTGTGCGGTAGCGCTGAAGCTCACGATGATGGTGTCTAGTGACCACGACT
TGGGGTATGTTTTTGTGCGGCGGATGATTTTCGATGTGTGCAGGTCCGAT
ACCCCAATGTTGACGTGGTTCGTCGAGGAGGCCAGCTGTTGGCCTTTCCG
TGTGAAATTTTCGTGCGAGCGGTGGGAAACGGAGTTCATGATAGTATAAA
TAATTTTTTCTTGTTCATGTTTGTTGTGTCTCGTGTCGTTGTGAAGGGCA
GCCGGTTTTTCGGTTCGCCGTGCCCCTGCCCTTGCGAATACCTAGGAGCG
CGGCCATTCGCTCGACGGTTGTGTCCGAGCTTTGTACGGGTGGGGGGCGG
CGGCGATGACTTGGTTTGGCCTTTGATGGCATACTTCCGAGGGGTGTTGC
TCCTCTGGGGCTTCACAATGCTGTCAAATAACTCGAACAGTTTCAAAAAG
TGTGTCTTTTTT back to topCoding sequence (CDS) from alignment at Scaffold_576:862169..865330- >EsuBft96_25a-0001 ID=EsuBft96_25a-0001|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_576:862169..865330- (Ectocarpus subulatus male Bft15b)
ATGTGTCACGCCCCCACGGCCAACGGCAGCCAGCTCTCGCTAGATCAATG
CGACGAGATCCTGTCCCCGTTCTTTAAATCAGCACCGTCCGGCCGGGTAG
CAGTAGCGGCAGCAGCAGCCGCAGCAACCACCGACGAAGAAGCAGCCACA
TATCCCCCCGGCCCACAAGGCGACCGACATCGAGACCGACAAGCCATGGC
AGACCCTCGGGGTGACTGCAGCCCTGGCGGTGCTAGTGGGGGTGCACCGA
CAAAGTTAGGTGAAGTGGATCCTTGTTCCCGGGGCGATACAGCAGTAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGATAGCCCAGCCCCCGAGGCCAA
CGCGATCCCTAGCGGGACTTCCCATCGCCCCCGAAGAGGTAGCAAACGCT
CCCGAAAGAAGATTCGCTTCACCGGGGCAATGGGCCAGTTTTTGGACGGA
CGGGGGGTTTGGAACGACTTTGCTGTGATGGAGGCCGAGCGAAAGGCGGG
CCTAAATATGCCGCAGTTTCTGCAGCAGCCAGACCACCAGCAGCAGCACA
ATCAGCAAATCCAAAATATGCAGCACGGAAAGGGGCAGCACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGTTTCAGGGAACGAGGGTAGGGAGGG
AGGCACGAGTGAGGAGGATCGAAATGCAAAGGATCAGGGGCGAAAGGGAG
CGCCGTTGGACGGAGGGGGCACGGGTAGCGGCAGCGAGGAAGCAACACCT
TCTGACGACGTTGTTGCCGATGGCATCAGCTGTTGGAGGTCGGCGGGCGG
CATCACTACCGCCATCACGGAGGATCTGCACACCGTCGACACAGTACCGT
CTGATACAGCGAACCCCGGCACGAGCACTGGAGACGCACCCCGTCTGCCC
AGTCAAACAGCAGCAGGAGCGGGGCAGCAGCAGCAGCGGCAGAGGGGTCC
GTGA back to top
|