EsuBft96_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft96_25a-0001
Unique Name	EsuBft96_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_576	contig	Scaffold_576:862169..865330 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft96_25
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	300
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft96_25a	EsuBft96_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_576 862169..865330 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_25a-0001	EsuBft96_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_576 864341..865294 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_25a-0001-exon	agat-exon-44173	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 862169..862904 -
EsuBft96_25a-0001-exon	EsuBft96_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_576 863064..865330 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_25a-0001-exon	agat-three_prime_utr-23633	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_576 862169..862904 -
EsuBft96_25a-0001-exon	agat-three_prime_utr-23634	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_576 863064..864340 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_25a-0001-cds	EsuBft96_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_576 864341..865294 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft96_25a-0001-exon	agat-five_prime_utr-15376	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_576 865295..865330 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_576:862169..865330-
coding sequence from alignment at Scaffold_576:862169..865330-

spliced messenger RNA

>EsuBft96_25a-0001 ID=EsuBft96_25a-0001|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3003bp|location=Sequence derived from alignment at Scaffold_576:862169..865330- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACCCCTCGTCACGGTAGACCCTGCCGCATCCGTTGATGTGTCACGCCCC
CACGGCCAACGGCAGCCAGCTCTCGCTAGATCAATGCGACGAGATCCTGT
CCCCGTTCTTTAAATCAGCACCGTCCGGCCGGGTAGCAGTAGCGGCAGCA
GCAGCCGCAGCAACCACCGACGAAGAAGCAGCCACATATCCCCCCGGCCC
ACAAGGCGACCGACATCGAGACCGACAAGCCATGGCAGACCCTCGGGGTG
ACTGCAGCCCTGGCGGTGCTAGTGGGGGTGCACCGACAAAGTTAGGTGAA
GTGGATCCTTGTTCCCGGGGCGATACAGCAGTAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGATAGCCCAGCCCCCGAGGCCAACGCGATCCCTAGCG
GGACTTCCCATCGCCCCCGAAGAGGTAGCAAACGCTCCCGAAAGAAGATT
CGCTTCACCGGGGCAATGGGCCAGTTTTTGGACGGACGGGGGGTTTGGAA
CGACTTTGCTGTGATGGAGGCCGAGCGAAAGGCGGGCCTAAATATGCCGC
AGTTTCTGCAGCAGCCAGACCACCAGCAGCAGCACAATCAGCAAATCCAA
AATATGCAGCACGGAAAGGGGCAGCACGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGTTTCAGGGAACGAGGGTAGGGAGGGAGGCACGAGTGAGG
AGGATCGAAATGCAAAGGATCAGGGGCGAAAGGGAGCGCCGTTGGACGGA
GGGGGCACGGGTAGCGGCAGCGAGGAAGCAACACCTTCTGACGACGTTGT
TGCCGATGGCATCAGCTGTTGGAGGTCGGCGGGCGGCATCACTACCGCCA
TCACGGAGGATCTGCACACCGTCGACACAGTACCGTCTGATACAGCGAAC
CCCGGCACGAGCACTGGAGACGCACCCCGTCTGCCCAGTCAAACAGCAGC
AGGAGCGGGGCAGCAGCAGCAGCGGCAGAGGGGTCCGTGACGCGGGGGTA
GAAGAGACGGTGATGGAATAACTGTTGTGGGCGCGGGGGTCTGCCAGTTG
GAGCTTGGGGCGCCTGGCACCACCAATAAACTTCTGTAAATACCAAGGAT
GGGAACAGGGCTGCAAAACACACTGGTAGGTTGGCCTGTATGAAAGTTAG
TTGCCCTTACGGCACCGGGCGTTGGATTTATGTATAATGGGACGGGAGGG
GGGGTCATGTTGATAGGGGTGACAGGGTGTCATTGGTCTTTTGTCAAGTA
TCAGTATCCATGCCAGCAGGCGTTTTGTAAATGCCAAACCAACCAGCGGG
TTCGAAAGTTCCCGATTGTTAGAGAGGAAGGGAGAGAGAGACTCGAGAGG
AGAGTGAGCCGGCAGGAAGAAAACGGTTGATAATTGGTGTAGAGACTGGG
GGCTAGCTGGCTGTGAACAGATAAGATTATGGTACTTATATTCAAAATTG
TTCTCGTTCAGTGAAGTGGGTGTTTTGACGATCACAAGAAAGAGACAAGA
GAGGGTGGAGGTAACCTACTCGCAGTGGTGACAGTAGTCTGTCAATTTCA
CTTCCAATTCAATTGCGTTGTATTCGAGAGTGTGATTCTTTGGGGGCGGG
GTTTGATGTAGGGTACCCGAAGAAGAGATGTTTGTGTTGACGCCTGCATG
TGTGTGCGCACGTGAAAGACACGGGAAGCTAGTATACCAGAAACCTGAGT
GAATTGTGGAGGCCAGCTCTTTTGATGACTTGCCATTGGTTGGCTGCCGT
AGGTGGCTATCTTATCGCTGAACGGCTTCTCTTCTCTTCTGCTACGCTAC
CTCGTGTGTGTGTGTTTTTTATGTTTTCCGTGAGATGCCGGAGTATTGCA
GCTGCCTGTTTCTCTGTCTCGCGACATTTTGGTGGTTGGTTGTACTCGGG
AGAAAGCGTGTCACTAGTCGTTTCAGCGAAACCTGGGTGTGGGGAAGCCA
CAACCGACACGTGATATAGCACCGTCTCACTGAGTGCAAGTGGTTCAAAA
CAGAAATCGTGCGGCCCTGCGCAGTCGTTCTGCTGTTGTTGCATGGCGTA
GTCCCGTAATTGGAGAGCTGCACATTTCTTTCGATAAGCAGGATTGCTTG
GTAGGAGGGGGGTGGGCTGTGGGGGGGGGGGGGAGAGCAGCATTTTACAC
TAGCAGGCGTTTTTGGGGGATGGGATAAGGAGGGGGAGGGATCACGGATC
ATGCCAGTGCTGCTGTAAAAAGGGACGGCCTCGTCTTTGAGATGGCAGTG
TAGTGTTGCGTCTACAGGCGTTTTTGGGGGATGGGATAAGGAGGGGGAGG
GATCACGGATCATGCCAGTGCTGCTGTAAAAAGGGACGGCCTCGTCTTTG
AGATGGCAGTGTAGTGTTGCGTCTACAGGTGAGGTCATGTGGTAAATGAT
CAACATTCGAATTTCTTTGGCAAGCACGCTATTTAATAAAAAAATCCGTT
ACACACGGGTAAAGAGAATGTTGTGAAAGCATAACCTCGTGCTAGCGTTG
GTTATAAAGGATACGTATGGGACTGTGCTTGGTTTCGTTTGGTGTGCGGT
AGCGCTGAAGCTCACGATGATGGTGTCTAGTGACCACGACTTGGGGTATG
TTTTTGTGCGGCGGATGATTTTCGATGTGTGCAGGTCCGATACCCCAATG
TTGACGTGGTTCGTCGAGGAGGCCAGCTGTTGGCCTTTCCGTGTGAAATT
TTCGTGCGAGCGGTGGGAAACGGAGTTCATGATAGTATAAATAATTTTTT
CTTGTTCATGTTTGTTGTGTCTCGTGTCGTTGTGAAGGGCAGCCGGTTTT
TCGGTTCGCCGTGCCCCTGCCCTTGCGAATACCTAGGAGCGCGGCCATTC
GCTCGACGGTTGTGTCCGAGCTTTGTACGGGTGGGGGGCGGCGGCGATGA
CTTGGTTTGGCCTTTGATGGCATACTTCCGAGGGGTGTTGCTCCTCTGGG
GCTTCACAATGCTGTCAAATAACTCGAACAGTTTCAAAAAGTGTGTCTTT
TTT

protein sequence of EsuBft96_25a-0001

>EsuBft96_25 ID=EsuBft96_25|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MCHAPTANGSQLSLDQCDEILSPFFKSAPSGRVAVAAAAAAATTDEEAAT
YPPGPQGDRHRDRQAMADPRGDCSPGGASGGAPTKLGEVDPCSRGDTAVA
AAAAAAAAADSPAPEANAIPSGTSHRPRRGSKRSRKKIRFTGAMGQFLDG
RGVWNDFAVMEAERKAGLNMPQFLQQPDHQQQHNQQIQNMQHGKGQHEEE
EEEEEEEEVSGNEGREGGTSEEDRNAKDQGRKGAPLDGGGTGSGSEEATP
SDDVVADGISCWRSAGGITTAITEDLHTVDTVPSDTANPGTSTGDAPRLP
SQTAAGAGQQQQRQRGP

mRNA from alignment at Scaffold_576:862169..865330-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft96_25a-0001 ID=EsuBft96_25a-0001|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3162bp|location=Sequence derived from alignment at Scaffold_576:862169..865330- (Ectocarpus subulatus male Bft15b)
AACCCCTCGTCACGGTAGACCCTGCCGCATCCGTTGATGTGTCACGCCCC
CACGGCCAACGGCAGCCAGCTCTCGCTAGATCAATGCGACGAGATCCTGT
CCCCGTTCTTTAAATCAGCACCGTCCGGCCGGGTAGCAGTAGCGGCAGCA
GCAGCCGCAGCAACCACCGACGAAGAAGCAGCCACATATCCCCCCGGCCC
ACAAGGCGACCGACATCGAGACCGACAAGCCATGGCAGACCCTCGGGGTG
ACTGCAGCCCTGGCGGTGCTAGTGGGGGTGCACCGACAAAGTTAGGTGAA
GTGGATCCTTGTTCCCGGGGCGATACAGCAGTAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGATAGCCCAGCCCCCGAGGCCAACGCGATCCCTAGCG
GGACTTCCCATCGCCCCCGAAGAGGTAGCAAACGCTCCCGAAAGAAGATT
CGCTTCACCGGGGCAATGGGCCAGTTTTTGGACGGACGGGGGGTTTGGAA
CGACTTTGCTGTGATGGAGGCCGAGCGAAAGGCGGGCCTAAATATGCCGC
AGTTTCTGCAGCAGCCAGACCACCAGCAGCAGCACAATCAGCAAATCCAA
AATATGCAGCACGGAAAGGGGCAGCACGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGTTTCAGGGAACGAGGGTAGGGAGGGAGGCACGAGTGAGG
AGGATCGAAATGCAAAGGATCAGGGGCGAAAGGGAGCGCCGTTGGACGGA
GGGGGCACGGGTAGCGGCAGCGAGGAAGCAACACCTTCTGACGACGTTGT
TGCCGATGGCATCAGCTGTTGGAGGTCGGCGGGCGGCATCACTACCGCCA
TCACGGAGGATCTGCACACCGTCGACACAGTACCGTCTGATACAGCGAAC
CCCGGCACGAGCACTGGAGACGCACCCCGTCTGCCCAGTCAAACAGCAGC
AGGAGCGGGGCAGCAGCAGCAGCGGCAGAGGGGTCCGTGACGCGGGGGTA
GAAGAGACGGTGATGGAATAACTGTTGTGGGCGCGGGGGTCTGCCAGTTG
GAGCTTGGGGCGCCTGGCACCACCAATAAACTTCTGTAAATACCAAGGAT
GGGAACAGGGCTGCAAAACACACTGGTAGGTTGGCCTGTATGAAAGTTAG
TTGCCCTTACGGCACCGGGCGTTGGATTTATGTATAATGGGACGGGAGGG
GGGGTCATGTTGATAGGGGTGACAGGGTGTCATTGGTCTTTTGTCAAGTA
TCAGTATCCATGCCAGCAGGCGTTTTGTAAATGCCAAACCAACCAGCGGG
TTCGAAAGTTCCCGATTGTTAGAGAGGAAGGGAGAGAGAGACTCGAGAGG
AGAGTGAGCCGGCAGGAAGAAAACGGTTGATAATTGGTGTAGAGACTGGG
GGCTAGCTGGCTGTGAACAGATAAGATTATGGTACTTATATTCAAAATTG
TTCTCGTTCAGTGAAGTGGGTGTTTTGACGATCACAAGAAAGAGACAAGA
GAGGGTGGAGGTAACCTACTCGCAGTGGTGACAGTAGTCTGTCAATTTCA
CTTCCAATTCAATTGCGTTGTATTCGAGAGTGTGATTCTTTGGGGGCGGG
GTTTGATGTAGGGTACCCGAAGAAGAGATGTTTGTGTTGACGCCTGCATG
TGTGTGCGCACGTGAAAGACACGGGAAGCTAGTATACCAGAAACCTGAGT
GAATTGTGGAGGCCAGCTCTTTTGATGACTTGCCATTGGTTGGCTGCCGT
AGGTGGCTATCTTATCGCTGAACGGCTTCTCTTCTCTTCTGCTACGCTAC
CTCGTGTGTGTGTGTTTTTTATGTTTTCCGTGAGATGCCGGAGTATTGCA
GCTGCCTGTTTCTCTGTCTCGCGACATTTTGGTGGTTGGTTGTACTCGGG
AGAAAGCGTGTCACTAGTCGTTTCAGCGAAACCTGGGTGTGGGGAAGCCA
CAACCGACACGTGATATAGCACCGTCTCACTGAGTGCAAGTGGTTCAAAA
CAGAAATCGTGCGGCCCTGCGCAGTCGTTCTGCTGTTGTTGCATGGCGTA
GTCCCGTAATTGGAGAGCTGCACATTTCTTTCGATAAGCAGGATTGCTTG
GTAGGAGGGGGGTGGGCTGTGGGGGGGGGGGGGAGAGCAGCATTTTACAC
TAGCAGGCGTTTTTGGGGGATGGGATAAGGAGGGGGAGGGATCACGGATC
ATGCCAGTGCTGCTGTAAAAAGGGACGGCCTCGTCTTTGAGATGGCAGTG
TAGTGTTGCGTCTACAGGTGAGGTCATGTGGTAAATGATCAACATTCGAA
TTTCTTTGGCAAGCACGCTATTTAATAAAAAAATCCGTTACACACGGGTA
AAGAGAATGTTGTGAAAGCATAACCNGGGGGGGGGGGGGGGGGGGGGGGG
TGGAGAGCAGCATTTTACACTAGCAGGCGTTTTTGGGGGATGGGATAAGG
AGGGGGAGGGATCACGGATCATGCCAGTGCTGCTGTAAAAAGGGACGGCC
TCGTCTTTGAGATGGCAGTGTAGTGTTGCGTCTACAGGTGAGGTCATGTG
GTAAATGATCAACATTCGAATTTCTTTGGCAAGCACGCTATTTAATAAAA
AAATCCGTTACACACGGGTAAAGAGAATGTTGTGAAAGCATAACCTCGTG
CTAGCGTTGGTTATAAAGGATACGTATGGGACTGTGCTTGGTTTCGTTTG
GTGTGCGGTAGCGCTGAAGCTCACGATGATGGTGTCTAGTGACCACGACT
TGGGGTATGTTTTTGTGCGGCGGATGATTTTCGATGTGTGCAGGTCCGAT
ACCCCAATGTTGACGTGGTTCGTCGAGGAGGCCAGCTGTTGGCCTTTCCG
TGTGAAATTTTCGTGCGAGCGGTGGGAAACGGAGTTCATGATAGTATAAA
TAATTTTTTCTTGTTCATGTTTGTTGTGTCTCGTGTCGTTGTGAAGGGCA
GCCGGTTTTTCGGTTCGCCGTGCCCCTGCCCTTGCGAATACCTAGGAGCG
CGGCCATTCGCTCGACGGTTGTGTCCGAGCTTTGTACGGGTGGGGGGCGG
CGGCGATGACTTGGTTTGGCCTTTGATGGCATACTTCCGAGGGGTGTTGC
TCCTCTGGGGCTTCACAATGCTGTCAAATAACTCGAACAGTTTCAAAAAG
TGTGTCTTTTTT

Coding sequence (CDS) from alignment at Scaffold_576:862169..865330-

>EsuBft96_25a-0001 ID=EsuBft96_25a-0001|Name=EsuBft96_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_576:862169..865330- (Ectocarpus subulatus male Bft15b)
ATGTGTCACGCCCCCACGGCCAACGGCAGCCAGCTCTCGCTAGATCAATG
CGACGAGATCCTGTCCCCGTTCTTTAAATCAGCACCGTCCGGCCGGGTAG
CAGTAGCGGCAGCAGCAGCCGCAGCAACCACCGACGAAGAAGCAGCCACA
TATCCCCCCGGCCCACAAGGCGACCGACATCGAGACCGACAAGCCATGGC
AGACCCTCGGGGTGACTGCAGCCCTGGCGGTGCTAGTGGGGGTGCACCGA
CAAAGTTAGGTGAAGTGGATCCTTGTTCCCGGGGCGATACAGCAGTAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGATAGCCCAGCCCCCGAGGCCAA
CGCGATCCCTAGCGGGACTTCCCATCGCCCCCGAAGAGGTAGCAAACGCT
CCCGAAAGAAGATTCGCTTCACCGGGGCAATGGGCCAGTTTTTGGACGGA
CGGGGGGTTTGGAACGACTTTGCTGTGATGGAGGCCGAGCGAAAGGCGGG
CCTAAATATGCCGCAGTTTCTGCAGCAGCCAGACCACCAGCAGCAGCACA
ATCAGCAAATCCAAAATATGCAGCACGGAAAGGGGCAGCACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGTTTCAGGGAACGAGGGTAGGGAGGG
AGGCACGAGTGAGGAGGATCGAAATGCAAAGGATCAGGGGCGAAAGGGAG
CGCCGTTGGACGGAGGGGGCACGGGTAGCGGCAGCGAGGAAGCAACACCT
TCTGACGACGTTGTTGCCGATGGCATCAGCTGTTGGAGGTCGGCGGGCGG
CATCACTACCGCCATCACGGAGGATCTGCACACCGTCGACACAGTACCGT
CTGATACAGCGAACCCCGGCACGAGCACTGGAGACGCACCCCGTCTGCCC
AGTCAAACAGCAGCAGGAGCGGGGCAGCAGCAGCAGCGGCAGAGGGGTCC
GTGA