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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft96_16 |
| Protein domains | PTHR25952 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 104 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.32e-22 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft96_16a-0001 ID=EsuBft96_16a-0001|Name=EsuBft96_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1044bp|location=Sequence derived from alignment at Scaffold_576:763876..764919- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTATATGCCGACGATGCCGGCATTGTGTCGAAGTCCGCCGACGGCCT
GGCGAGGATGATGACCATTATCGTGGAGGTGTTCCGGGAGCTGACGGTGT
CGGAGAGGAAGACGGAGACATTGGTGATGCGGGTGAAGGAGAAACAGCGA
CCGCCGCCGACGCCACCGCCGCCGCTGACCATCGAAGCAGCGGGGCAAAG
GTACGCACAGACGACCGAGTTCCGATACCTGGGCGGCCTCATCAACGAGC
AGGGCGACCTCACCAGAGAGATCAACCACAGGAGCAAAGCAGCGTGGGCG
TGCATTTGGCGATACGCCACGGAGCTCTTCGACCAACCGGGAGCACCGTT
TCGCCTCAAGGCCCGCCTACTCCAGGCGGAGGCAGTGGCGGCACTGCTAT
ACGGCTGCATGACATGGTCCCCACACCGCGACCACTACCGGCTGCTGCAG
ACGACACACCACCGTCTGCTTCTGCGAGTTATCGGCTACCGGCGCAAACG
AGGCACCTACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCT
GCCAGAGCGTGGAGGCCACTGTCCGTCAACGGCGCCTGCTCTTTGCGGGG
GCCGTGGCAAGGCAGTCAGACAGGCGGCTTCCGAAACGGCTGATGTTCGG
CGAGTTGGTGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACT
GGCTGATATGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGC
TCCACGCCCGACAAGCGGAGCTTCTTGGGAATCCCGAAGCCAGACTGGGA
CGAGGCGGCGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTAC
AGGGAGCTGAGAGGTTCATGGCCTCTTGGCACAAGGGCAAGGAGGAGGCC
AGCCGACAACGAGCCATCAAACGAAGAGACAGCGGGCCCAAAAATAGTCT
AGATACGGCACCAATCAACGGGGCGGTAGGGGGGCGGAAGGAAACGGCGC
GGCGGGAAGAAAGCAAGCGAGAAGAGACCGACCGCGTGACGTGA back to topprotein sequence of EsuBft96_16a-0001 >EsuBft96_16 ID=EsuBft96_16|Name=EsuBft96_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=347bp
MLYADDAGIVSKSADGLARMMTIIVEVFRELTVSERKTETLVMRVKEKQR
PPPTPPPPLTIEAAGQRYAQTTEFRYLGGLINEQGDLTREINHRSKAAWA
CIWRYATELFDQPGAPFRLKARLLQAEAVAALLYGCMTWSPHRDHYRLLQ
TTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAG
AVARQSDRRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHG
STPDKRSFLGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEA
SRQRAIKRRDSGPKNSLDTAPINGAVGGRKETARREESKREETDRVT back to topmRNA from alignment at Scaffold_576:763876..764919- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft96_16a-0001 ID=EsuBft96_16a-0001|Name=EsuBft96_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1044bp|location=Sequence derived from alignment at Scaffold_576:763876..764919- (Ectocarpus subulatus male Bft15b)
ATGCTATATGCCGACGATGCCGGCATTGTGTCGAAGTCCGCCGACGGCCT
GGCGAGGATGATGACCATTATCGTGGAGGTGTTCCGGGAGCTGACGGTGT
CGGAGAGGAAGACGGAGACATTGGTGATGCGGGTGAAGGAGAAACAGCGA
CCGCCGCCGACGCCACCGCCGCCGCTGACCATCGAAGCAGCGGGGCAAAG
GTACGCACAGACGACCGAGTTCCGATACCTGGGCGGCCTCATCAACGAGC
AGGGCGACCTCACCAGAGAGATCAACCACAGGAGCAAAGCAGCGTGGGCG
TGCATTTGGCGATACGCCACGGAGCTCTTCGACCAACCGGGAGCACCGTT
TCGCCTCAAGGCCCGCCTACTCCAGGCGGAGGCAGTGGCGGCACTGCTAT
ACGGCTGCATGACATGGTCCCCACACCGCGACCACTACCGGCTGCTGCAG
ACGACACACCACCGTCTGCTTCTGCGAGTTATCGGCTACCGGCGCAAACG
AGGCACCTACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCT
GCCAGAGCGTGGAGGCCACTGTCCGTCAACGGCGCCTGCTCTTTGCGGGG
GCCGTGGCAAGGCAGTCAGACAGGCGGCTTCCGAAACGGCTGATGTTCGG
CGAGTTGGTGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACT
GGCTGATATGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGC
TCCACGCCCGACAAGCGGAGCTTCTTGGGAATCCCGAAGCCAGACTGGGA
CGAGGCGGCGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTAC
AGGGAGCTGAGAGGTTCATGGCCTCTTGGCACAAGGGCAAGGAGGAGGCC
AGCCGACAACGAGCCATCAAACGAAGAGACAGCGGGCCCAAAAATAGTCT
AGATACGGCACCAATCAACGGGGCGGTAGGGGGGCGGAAGGAAACGGCGC
GGCGGGAAGAAAGCAAGCGAGAAGAGACCGACCGCGTGACGTGA back to topCoding sequence (CDS) from alignment at Scaffold_576:763876..764919- >EsuBft96_16a-0001 ID=EsuBft96_16a-0001|Name=EsuBft96_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1044bp|location=Sequence derived from alignment at Scaffold_576:763876..764919- (Ectocarpus subulatus male Bft15b)
ATGCTATATGCCGACGATGCCGGCATTGTGTCGAAGTCCGCCGACGGCCT
GGCGAGGATGATGACCATTATCGTGGAGGTGTTCCGGGAGCTGACGGTGT
CGGAGAGGAAGACGGAGACATTGGTGATGCGGGTGAAGGAGAAACAGCGA
CCGCCGCCGACGCCACCGCCGCCGCTGACCATCGAAGCAGCGGGGCAAAG
GTACGCACAGACGACCGAGTTCCGATACCTGGGCGGCCTCATCAACGAGC
AGGGCGACCTCACCAGAGAGATCAACCACAGGAGCAAAGCAGCGTGGGCG
TGCATTTGGCGATACGCCACGGAGCTCTTCGACCAACCGGGAGCACCGTT
TCGCCTCAAGGCCCGCCTACTCCAGGCGGAGGCAGTGGCGGCACTGCTAT
ACGGCTGCATGACATGGTCCCCACACCGCGACCACTACCGGCTGCTGCAG
ACGACACACCACCGTCTGCTTCTGCGAGTTATCGGCTACCGGCGCAAACG
AGGCACCTACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCT
GCCAGAGCGTGGAGGCCACTGTCCGTCAACGGCGCCTGCTCTTTGCGGGG
GCCGTGGCAAGGCAGTCAGACAGGCGGCTTCCGAAACGGCTGATGTTCGG
CGAGTTGGTGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACT
GGCTGATATGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGC
TCCACGCCCGACAAGCGGAGCTTCTTGGGAATCCCGAAGCCAGACTGGGA
CGAGGCGGCGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTAC
AGGGAGCTGAGAGGTTCATGGCCTCTTGGCACAAGGGCAAGGAGGAGGCC
AGCCGACAACGAGCCATCAAACGAAGAGACAGCGGGCCCAAAAATAGTCT
AGATACGGCACCAATCAACGGGGCGGTAGGGGGGCGGAAGGAAACGGCGC
GGCGGGAAGAAAGCAAGCGAGAAGAGACCGACCGCGTGACGTGA back to top
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