Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft967_6 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 71 |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_003540.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft967_6a-0001 ID=EsuBft967_6a-0001|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=718bp|location=Sequence derived from alignment at Scaffold_228:313042..318159- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTACGACGACTGCTGCTGAGCTTCGTTTTTTGAAGCCAGCAGGGTTCA
TCCAGCACGAGATGAACAGCAGCGACAGCAGTGCTCGAGACGGGGGCTTG
GCGAGGGAGGAAGGGAGGGGAAGCATGGGCGGAAGCAGCAGGAGAAGGAG
GAGAGGATCCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGG
CCGCCTGCTCGACTCCGGCGTACGGATTTATGGTCCCCGCGGGGGCGGGA
GGAGCGGACCCGATGACGGGAGCGGCGGCGGCTGTGGCAGCCGGGCAGCA
CCGACAGCAGCAGCAGCAGCAGCAGCAGCAGTTCTCGCGGGGGGCGGTGA
CAGCGACTGCTACGGCAACCGCGACCTCCCCTTCGTGCCCTGGTTGCGCC
GCTCCGACGACATCGATGCTGGGGACGCACGGCGCCGGCGCCGGCGGCGT
GGTTATACCGTCGTCGCGACGCTCGTCGTGGACGGCCGGGGGCGGCGGCG
GATTTGAAGTCGGTGGGGTGGCGGGAGGGCGGAGGGGGGCGGCGGCGGCG
CTGAGGGACACCACGCGGAGACTGATAGCGGCTAGAAGGAAGCGAGGGGA
TGGTACGGAGTCGTTGTCGATGTCGTTGTCGGCAAGAGGCAGCAGCAACT
CGCGAGGAGGGGGTGGCAGCTCGAAGGGCCGCGCTAGATTCAGCAAAGTG
TACAGCGGCACGGAGTAG back to topprotein sequence of EsuBft967_6a-0001 >EsuBft967_6 ID=EsuBft967_6|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MNSSDSSARDGGLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACS
TPAYGFMVPAGAGGADPMTGAAAAVAAGQHRQQQQQQQQQFSRGAVTATA
TATATSPSCPGCAAPTTSMLGTHGAGAGGVVIPSSRRSSWTAGGGGGFEV
GGVAGGRRGAAAALRDTTRRLIAARRKRGDGTESLSMSLSARGSSNSRGG
GGSSKGRARFSKVYSGTE back to topmRNA from alignment at Scaffold_228:313042..318159- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft967_6a-0001 ID=EsuBft967_6a-0001|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5118bp|location=Sequence derived from alignment at Scaffold_228:313042..318159- (Ectocarpus subulatus male Bft15b)
ATGTACGACGACTGCTGCTGAGCTTCGTTTTTTGAAGCCAGCAGGGTTCA
TCCAGCACGAGATGAACAGCAGCGACAGCAGTGCTCGAGACGGGGGCTTG
GCGAGGGAGGAAGGGAGGGGAAGCATGGGCGGAAGCAGCAGGAGAAGGAG
GAGAGGATCCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGG
CCGCCTGCTCGACTCCGGCGTACGGGTGAGAGAGACTGGCGAGCAAGATT
CTGTGTTGGAGACACACGTGACGTGGGCGTTTTTTTTTCACTAGATATTT
GAAGAACATATGCATAATGTGTTCGATGCTTTTTCATGTAGTTCTAGAAG
TATCCTCTCTTCAACAGCTAGCTTCGGTTGAGAGGTTAAGCGCGACTGCT
GTTCCGCCGTAGTGTTTGCCACCGACCCAAGGCGTATCGTGCTCTCGAGT
GTGCGGCCCAGACTCTGTCTGCACTCGAACAACGACACCAGCAGCGGAGA
AGATTCTTTCATTGAGTGGCCTTCAATTTATTCTGGTTGTGTGCATCATG
TGTTATGAGACCCGTTCTTTGGTTTTTCGGGTGTTCTCGTCGAATTGTTC
GCGGAGCCCCTCCGTTCGACACTCTTCGCCTTCCCTGCTGCCTCCAGGGT
TAGCTACTATCACGAGTACGTGATGATGATGCTGTTTGCTTTCACGGTTG
ACTAATGCAGAGTCTGCGCACGCCGCAGGTAGACCCTCGATAAAATGTCG
GAAGAGTGTGCAAAATAGAGGACGTACTTTTTTGCTGTTTTCCGATCGTT
TTTTTTTTGCTTGTGCGCGTTTCTCCTCACACGACGAAAACGAACGCTGT
ACGCCCCCCCGGCACTATTAATACGAGGATATGCAGCATATTATCGTGTG
TCCACTACCCCCAATAGTTCGTACCTTCGCCATCGACCAAGCTCAAGCTT
AGGTCTGCAACTCCACACACAGTTCCCCATGGCATTCCAAATACATTGAA
ACCTGTCTATTGCAACCGAAAGCAGGGTCTCGGCCTTTGAACAAGCTTTA
CAACCACCGCTGTGGCCGTTGGAAGCATCCGGCAGGCACCGGTACCGCTA
CCTCACTACCGAGCGGTCTTTGAACGCACCCTACAACCAATCCCCTTGTA
CCTACCCTCCATCGGAAACGGGAGCGAAAATTAACCATTCTTTGATTGAG
ACGCTGCGTTATTTTTCAAAGACACAAGCTTGACGAATAGGCTGAATATT
AACGAAGCGCCAAGAATCAAAATCCAAGAATTCAAAATCAAAATCGACAT
CCGATTGGTCAAATAAATCATACCTCATGACGACGCCCTTTGACTTTCTG
GAAGATTCTCTCTCCGGGAAGAAGTCCCCGAGGGAGTTTTTTATCAACAT
CAAAGATCAAAGAGGCAGGGAGTTCAAGACTTGGAAGGCTTGGAGCAACT
GCCGCGAGGCCGCTGAAAAAGCAAGTGTACGACACGGCCTGCTGTACACA
GCTCATCGAGGGGCTATGGGCATCCTACCACCGACACCATGGCCATTCGT
TGTAGCCAGAAGACTCTGCTCGCCGGCAAGCCCAAAACCGGGCCGGCTCG
TTGGGTGCTCGAGGAGAAAATACCGATCGTGACAAGCGGTGAACGGACTG
ACGATCCAAGCAGGGCGCGGCGTTGTCGGGGCTGTCCCGTGCGGGAGACG
GTACTCACAACCTTTTTTTCTCCACACTCACGATACCCCAAGGCATCTAG
CCTTGTACGAAAAAGATAGTGGGTAGAGGTACCTCCCGCCGCGTGGCATT
GCTCTCAGTGTTGTTGCTTCCTCCTTCGAAAGGATATCGCTGGAAAACTA
AACTGTGAGCAGACAATCGGCGCGAACTTGAACTATAATACCAGCTCTCT
GACGTGGATATCTTTGGGTCAACCAATTTTCTTCCCGATACGCACGATAC
CCCACGGTAGCAGACCTTGGGCTTGAAAGATGGAGCAGAGAGGTACCTCC
CGCCGCGTGGCGTTGCTGCTGCTGTTGCTTCCTCCTTCGGAAACTTATCG
GTGGAAAACCACCCCCGTGGCGACCCAAAACACCGAATCGAAGTGATCGC
TCGCAACAGTTGGCATTTTTGCTTCAACACAACCTTTTTTTCCGGCGCAT
TCGGCACCTAATGACGCCAAACCCTGGCATCGCCCAACAGCCCATGGCAC
CAGCTCCTTTCGGATACCGTTCTTGAGGCAAGTCGTTTTTCACTTGGCGA
GATATCGGCTAGCAGGTGAACAGAAGAGCGCAAAACCTACCCTAGAAAAT
TCACCGCGTCGCTGCTGGCTCTTCCCCCGGCGCCAGGTCTTGTTAATTAG
TCACCCCATCTGTTTCCTATCCACGTGAACATGTTCGACCCCCTTTTATT
CAGTTCCACGATACATTTTCGAAAAGACCGTTTCGACGCCGCCGTTTTCG
GCGCTGTGACTGTTCCGGCAGTTGAGAAATCGAGCTTCGAAATTCGGTCA
AGGGGGTGTGTTATATTGTGTCATATACGGTGTTCGGCCCTAAGGATGGT
GGAACAATTGTTCATGACCCCTCCCTACCCCCACCCGTTCTTTCGCAGTC
GAGGTGTCTCAGGCCTGATCGGATACAGCAGCTAGCGCCCGCGCTAAAAA
ACTTCGTAGTCAAGAGAGATTCGAGCCTCGAAAAGCTCGAAGTCAATGAA
TACGAACTTCAGCACCGTTTGTGTGCTCGGTCGAAGATACCTGTTCGCTA
GCACCCACCGTACGACGGCCACTCGCATATATGTATGTAGCATCGGCCTA
CGTAGGAACGAAGAACCCCAACCTCCTTGACCAAAAGTAGAGGTTCTTGA
GTGCGGCCGCTAGGCGTACACATGTATTCGTACCGATGTCATGTCTTGTC
ATCACAGGGCACCAACCGTATACGACACAAGATAAGACAAACCCTACACC
AATTTTCGAAGCTTGATTTCCCAGCAGCAGAAAGAGTGGGGGTGCCGAAA
ACGGCGGCGTTGAAGCCGTCTGGTCGAGAGCTCTCCGAAAATGTATCGTT
TCGTTTATGCAGCGTATTCGAGCTTTGAAAATCGGTCCAGGGGGTGTGTT
ATCTTGTGTCACATACGGTAGACGCGCCAACGGCCTACATACAGGCAGAG
CCAAAGGGATGTCCGAGAGGTATACGCAAAGTGCAAAAATGTATGTCACG
GGGGGGGGGAAGGGTACGCGGAGTGCGAAAGGGATGTCGCGAGGAATGTA
CAGGCGGAGAGACCCACAGCACCAAGATGTGGGCTCACAAAAACCTTCCC
TGATTGTGTTCGAGAATTGCGAAAGAGAAAGAGCAGTAGTGTACGCGGAT
TGCGAAAGGGGTGTAATGGGGGGTACACGGAGTGCGAACGGATGCCATGC
GCGTGAGATTGTGAAAAAATGAATATTTCAGCGCCACCCGCTGGGCGGCG
ACGTGGGTGATGTTTCAGTTTTCTCGTGGTGTGTATGTGTGTGATTGGAC
CTTCAGCTCACGGCGACTCTCACCGACACGGTACTGCCTGCATGGCCGAA
AAAGTCAAACAAGAACGCCCGCGCAATCTGTTGTTTTTTGGTACTGCAGT
TTAGTCGCGGGAAGGCTAGGACCATGTATCGCTCGTCCTCGATCGACAGT
AGTAGTCAATTCACATACCAGGCGGCACTTAGTGTCACGAGATCATCTCG
CAACCTCGACATGTCCGATATCCCTCATGCTAGGTCTACAGCAGTAGTCA
AGTCACATACCAGGCGGCACGTTGTGTGCCGAGATCACCTCCGAACCTCG
ACATCTCCGATATCGCTCATCCTAGGTCTGCAGCAGTAGTAGTCAAGTCA
CTTACCAGTCGGCACTTTGTGCCGAGATCGTCTCGTAACCTCGACATCTC
CGTTGGAACATGAAAGAAGCGGGCCGGCTCAGCATGACAGCAGTAACGGC
ACGCAGGCGGGCGGTTGGGTATATGTGAAACATATGTCTCCAGCAACTCA
GATTGAGGGTGTACGAAGGCGCCACTGGCGGCTGCTACTTGCGTGATCTG
TGTTTTACGAGATACCTACCACAGCTCTTTAGAAGCCGAAATTAAACCAA
TTAGACTGGTCAGCGCTGAGAAGTCTATCGGTTATTAGTTTGGGCTTCTA
AAAAAGATAGTCGTGGGATTCGTGAGCCCCGGCACTTTCACTTCCGAGTA
GGCGACCCCCCTTGCCAGCGCTACTCTCCGCCCAATCTTCAGTGCGGTCC
GTACCACTCGCACCCTACAACCTGCTGAATGTTCCAGGGTCTCAGACGAG
TCCTTCCGTCACCCATACTCTGGCCAGGAGTATCCAGGCTTTCAGGAAAA
GAAAACGCTTGAAAAGTGTCCAGCCAGGGTCTCGAACCCACAACTAGCTT
CATTTAAGCCGAAAATAAACCATGGTTTGAGGTCGGCTTCTGTAGCTCCA
AATAAAAGGTTTTCAGAAATCACGGGACATTCCGAAGAATGTTTCAAGAT
CGACGTCCGCCAAAAAAATTGCAGCAGCATCACAAACCCGCACACATGCG
CCTTTCGGCGTTGTCGACCTCAGATTTATGGTCCCCGCGGGGGCGGGAGG
AGCGGACCCGATGACGGGAGCGGCGGCGGCTGTGGCAGCCGGGCAGCACC
GACAGCAGCAGCAGCAGCAGCAGCAGCAGTTCTCGCGGGGGGCGGTGACA
GCGACTGCTACGGCAACCGCGACCTCCCCTTCGTGCCCTGGTTGCGCCGC
TCCGACGACATCGATGCTGGGGACGCACGGCGCCGGCGCCGGCGGCGTGG
TTATACCGTCGTCGCGACGCTCGTCGTGGACGGCCGGGGGCGGCGGCGGA
TTTGAAGTCGGTGGGGTGGCGGGAGGGCGGAGGGGGGCGGCGGCGGCGCT
GAGGGACACCACGCGGAGACTGATAGCGGCTAGAAGGAAGCGAGGGGATG
GTACGGAGTCGTTGTCGATGTCGTTGTCGGCAAGAGGCAGCAGCAACTCG
CGAGGAGGGGGTGGCAGCTCGAAGGTGACTTGTTTTTCTAACGTAGATGT
ATGTTGTACGAACGAGGTACGTGCAGGGCCGCGCTAGATTCAGCAAAGTG
TACAGCGGCACGGAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_228:313042..318159- >EsuBft967_6a-0001 ID=EsuBft967_6a-0001|Name=EsuBft967_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_228:313042..318159- (Ectocarpus subulatus male Bft15b)
ATGAACAGCAGCGACAGCAGTGCTCGAGACGGGGGCTTGGCGAGGGAGGA
AGGGAGGGGAAGCATGGGCGGAAGCAGCAGGAGAAGGAGGAGAGGATCCA
GCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGGCCGCCTGCTCG
ACTCCGGCGTACGGATTTATGGTCCCCGCGGGGGCGGGAGGAGCGGACCC
GATGACGGGAGCGGCGGCGGCTGTGGCAGCCGGGCAGCACCGACAGCAGC
AGCAGCAGCAGCAGCAGCAGTTCTCGCGGGGGGCGGTGACAGCGACTGCT
ACGGCAACCGCGACCTCCCCTTCGTGCCCTGGTTGCGCCGCTCCGACGAC
ATCGATGCTGGGGACGCACGGCGCCGGCGCCGGCGGCGTGGTTATACCGT
CGTCGCGACGCTCGTCGTGGACGGCCGGGGGCGGCGGCGGATTTGAAGTC
GGTGGGGTGGCGGGAGGGCGGAGGGGGGCGGCGGCGGCGCTGAGGGACAC
CACGCGGAGACTGATAGCGGCTAGAAGGAAGCGAGGGGATGGTACGGAGT
CGTTGTCGATGTCGTTGTCGGCAAGAGGCAGCAGCAACTCGCGAGGAGGG
GGTGGCAGCTCGAAGGGCCGCGCTAGATTCAGCAAAGTGTACAGCGGCAC
GGAGTAG back to top
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