EsuBft967_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft967_11a-0001
Unique Name	EsuBft967_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:262174..263178 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G557
ProteomeId	EsuBft967_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2880.D7G557\|-
Length	100
Hectar predicted targeting category	other localisation
Evalue	1.26e-72
EggNOG OGs	29ZCP@1\|root,2RXW0@2759\|Eukaryota
Ec32 ortholog description	EsV-1-7 domain protein
Ec32 ortholog	Ec-13_003790.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft967_11a	EsuBft967_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 262174..263178 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_11a-0001-exon	EsuBft967_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 262174..263178 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_11a-0001-cds	EsuBft967_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 262174..263178 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_11a-0001	EsuBft967_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 262174..263178 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:262174..263178-
coding sequence from alignment at Scaffold_228:262174..263178-

spliced messenger RNA

>EsuBft967_11a-0001 ID=EsuBft967_11a-0001|Name=EsuBft967_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1005bp|location=Sequence derived from alignment at Scaffold_228:262174..263178- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGTGTAAGGCCCCGCAATGCACCCGACAGCCCTCCTTCAATGC
CGAGGGCAGCAAGACGGCGATGTTTTGCAGGCAACATGCCGAGGAGTCCA
TGGTGGACGTAAGGAACAAGCGCTGCGCTCAAGCCGGATGTACACGGCGA
GCCACGTTCAACAAACAAGGCAACAAGATGCCGATGTTCTGCAGGCAACA
TGCCGAGGAGTCCATGGTGGACGTATGGCACAAGCACTGCGCCCAAGCCG
GATGTACACGGCGAGCCACGTTCAACAAACAAGGCAACAAGATGCCGATG
TTCTGCAGGCAACATGCCGAGGAGTCCATGGTGGACGTATGGCACAAGCA
CTGCGCCCAAGCCGGATGTACACGGCGAGCCACGTTCAACAAACAAGGCA
ACAAGATGCCGATGTTCTGCAGGCAACATGCCGAGGAGTCCATGGTGGAC
GTATGGCACAAGCACTGCGCCCACGGTGAAGGGTGCACAAGTCGACCGAG
TTGGGGGTACTGGGCGGACGTGACGGCTAGTGTATGCGCGAAACACAAAG
GCGACCTCACGGAAGGGTTCGCGATCAACTTCAATCGACAGTGCAAGGTA
GCTGGTGTGAAGGGATGCATTGCAGTTGCGAGGTGGGGGGTGGACGGCGA
GCACCCGACTCACTGCGACAAGCACGGTGCACCGCGGGCCGGCGAAGGCT
TCGTCCGCGTCCCATCAAGCGGTCGGAGGACTTCAGCTTCATCTTCGTAT
TCGAGCGCGGCCTCGGGCAGGAGCCGCTCCGCCCGGGGTGGCCGAACCGG
AACCCGTGGCGGGGGTGGAATCAAGAGGGCCCGCAAGGCGGTACCCCGGC
GCCCTGTCGAGAGCTCGTCAGAGGAGGAGTCGAACGAAGACTTCGACGAC
GACGACAGCGATGGCTCGGTGGGGGGCGCCAATGAGGAGGAAGAAGACGA
GGATGAGGAGCAAGAGAAGGTCGAGAAACCGAAGAGGAAGATCATTTGGC
TTTAG

protein sequence of EsuBft967_11a-0001

>EsuBft967_11 ID=EsuBft967_11|Name=EsuBft967_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=334bp
MSECKAPQCTRQPSFNAEGSKTAMFCRQHAEESMVDVRNKRCAQAGCTRR
ATFNKQGNKMPMFCRQHAEESMVDVWHKHCAQAGCTRRATFNKQGNKMPM
FCRQHAEESMVDVWHKHCAQAGCTRRATFNKQGNKMPMFCRQHAEESMVD
VWHKHCAHGEGCTSRPSWGYWADVTASVCAKHKGDLTEGFAINFNRQCKV
AGVKGCIAVARWGVDGEHPTHCDKHGAPRAGEGFVRVPSSGRRTSASSSY
SSAASGRSRSARGGRTGTRGGGGIKRARKAVPRRPVESSSEEESNEDFDD
DDSDGSVGGANEEEEDEDEEQEKVEKPKRKIIWL

mRNA from alignment at Scaffold_228:262174..263178-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft967_11a-0001 ID=EsuBft967_11a-0001|Name=EsuBft967_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1005bp|location=Sequence derived from alignment at Scaffold_228:262174..263178- (Ectocarpus subulatus male Bft15b)
ATGTCCGAGTGTAAGGCCCCGCAATGCACCCGACAGCCCTCCTTCAATGC
CGAGGGCAGCAAGACGGCGATGTTTTGCAGGCAACATGCCGAGGAGTCCA
TGGTGGACGTAAGGAACAAGCGCTGCGCTCAAGCCGGATGTACACGGCGA
GCCACGTTCAACAAACAAGGCAACAAGATGCCGATGTTCTGCAGGCAACA
TGCCGAGGAGTCCATGGTGGACGTATGGCACAAGCACTGCGCCCAAGCCG
GATGTACACGGCGAGCCACGTTCAACAAACAAGGCAACAAGATGCCGATG
TTCTGCAGGCAACATGCCGAGGAGTCCATGGTGGACGTATGGCACAAGCA
CTGCGCCCAAGCCGGATGTACACGGCGAGCCACGTTCAACAAACAAGGCA
ACAAGATGCCGATGTTCTGCAGGCAACATGCCGAGGAGTCCATGGTGGAC
GTATGGCACAAGCACTGCGCCCACGGTGAAGGGTGCACAAGTCGACCGAG
TTGGGGGTACTGGGCGGACGTGACGGCTAGTGTATGCGCGAAACACAAAG
GCGACCTCACGGAAGGGTTCGCGATCAACTTCAATCGACAGTGCAAGGTA
GCTGGTGTGAAGGGATGCATTGCAGTTGCGAGGTGGGGGGTGGACGGCGA
GCACCCGACTCACTGCGACAAGCACGGTGCACCGCGGGCCGGCGAAGGCT
TCGTCCGCGTCCCATCAAGCGGTCGGAGGACTTCAGCTTCATCTTCGTAT
TCGAGCGCGGCCTCGGGCAGGAGCCGCTCCGCCCGGGGTGGCCGAACCGG
AACCCGTGGCGGGGGTGGAATCAAGAGGGCCCGCAAGGCGGTACCCCGGC
GCCCTGTCGAGAGCTCGTCAGAGGAGGAGTCGAACGAAGACTTCGACGAC
GACGACAGCGATGGCTCGGTGGGGGGCGCCAATGAGGAGGAAGAAGACGA
GGATGAGGAGCAAGAGAAGGTCGAGAAACCGAAGAGGAAGATCATTTGGC
TTTAG

Coding sequence (CDS) from alignment at Scaffold_228:262174..263178-

>EsuBft967_11a-0001 ID=EsuBft967_11a-0001|Name=EsuBft967_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_228:262174..263178- (Ectocarpus subulatus male Bft15b)
ATGTCCGAGTGTAAGGCCCCGCAATGCACCCGACAGCCCTCCTTCAATGC
CGAGGGCAGCAAGACGGCGATGTTTTGCAGGCAACATGCCGAGGAGTCCA
TGGTGGACGTAAGGAACAAGCGCTGCGCTCAAGCCGGATGTACACGGCGA
GCCACGTTCAACAAACAAGGCAACAAGATGCCGATGTTCTGCAGGCAACA
TGCCGAGGAGTCCATGGTGGACGTATGGCACAAGCACTGCGCCCAAGCCG
GATGTACACGGCGAGCCACGTTCAACAAACAAGGCAACAAGATGCCGATG
TTCTGCAGGCAACATGCCGAGGAGTCCATGGTGGACGTATGGCACAAGCA
CTGCGCCCAAGCCGGATGTACACGGCGAGCCACGTTCAACAAACAAGGCA
ACAAGATGCCGATGTTCTGCAGGCAACATGCCGAGGAGTCCATGGTGGAC
GTATGGCACAAGCACTGCGCCCACGGTGAAGGGTGCACAAGTCGACCGAG
TTGGGGGTACTGGGCGGACGTGACGGCTAGTGTATGCGCGAAACACAAAG
GCGACCTCACGGAAGGGTTCGCGATCAACTTCAATCGACAGTGCAAGGTA
GCTGGTGTGAAGGGATGCATTGCAGTTGCGAGGTGGGGGGTGGACGGCGA
GCACCCGACTCACTGCGACAAGCACGGTGCACCGCGGGCCGGCGAAGGCT
TCGTCCGCGTCCCATCAAGCGGTCGGAGGACTTCAGCTTCATCTTCGTAT
TCGAGCGCGGCCTCGGGCAGGAGCCGCTCCGCCCGGGGTGGCCGAACCGG
AACCCGTGGCGGGGGTGGAATCAAGAGGGCCCGCAAGGCGGTACCCCGGC
GCCCTGTCGAGAGCTCGTCAGAGGAGGAGTCGAACGAAGACTTCGACGAC
GACGACAGCGATGGCTCGGTGGGGGGCGCCAATGAGGAGGAAGAAGACGA
GGATGAGGAGCAAGAGAAGGTCGAGAAACCGAAGAGGAAGATCATTTGGC
TTTAG