EsuBft962_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft962_2a-0001
Unique NameEsuBft962_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:70342..71166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft962_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length77
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft962_2aEsuBft962_2aEctocarpus subulatus male Bft15bgeneScaffold_230 70342..71166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft962_2a-0001-exonagat-exon-56669Ectocarpus subulatus male Bft15bexonScaffold_230 70342..71028 -
EsuBft962_2a-0001-exonEsuBft962_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 71082..71166 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft962_2a-0001-exonagat-three_prime_utr-23546Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 70342..70990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft962_2a-0001-cdsEsuBft962_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 70991..71028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft962_2a-0001EsuBft962_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 70991..71166 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft962_2a-0001 ID=EsuBft962_2a-0001|Name=EsuBft962_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=772bp|location=Sequence derived from alignment at Scaffold_230:70342..71166- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGTTCATCGCAGCCTTCCTGCTACGAGCTATTGACAGCGTGGT
TTCCTGCCCCATCATTGCCGCGGTATTGGACAAGTGCACTTTCCCTTCGA
TCGAACAACTCGGGCGGCGGTAGCCACTGGCCGTTCTTGTAGGATAGCAG
GTTTAGGAACCTGTCGTCAGAGGGTGGTGCAAACTTTGCTATTGTTGAAG
GACGGCACACGCTTGATAGAATGGCGGACCACGAGGACTTTTAGGTCTTG
CTATAATTGGGGGGGTTGTTCGCGAAGGAGTTTGTTCGACGGAGCAGCCG
AGTACAGTGGTGGGAGCCGCTCAGTTTTGCTCCGTGACATATGTTTCCAT
ACCCCCTACAATTGTAGTCGCTCGGCGTGATAAGTATTTACTGCACACAT
GCATACAACACACGCGTGTCTCCTTCTCATCCAGAAACACAAGTCTCATG
TCTGGCCTGCCTGCTATTATGTGATCCCTGTTGGGGCGTCCAACGGCGTT
CTGAGTGGTGAAAAATGGACGTCTGGAGTACACAAGATGACAACACACAC
AAACTTGTGCACGGAGTAGAACCGCTCCGCGGGGCGTTGTTTTCTTTACC
CTTTTGGGTCTACAGGCGTCCTGAATGATCATTGATTGATCACTTGCAAA
TGATGGTGTGGTGGCATGCCATGGAGTTGTTGCCCTGTATTCCTCCACGC
CAGGTGTTGGCAAGTCAATAGGTAGGTGTGTCTTTATTATTTGCATCGAC
CGCGCTACCCGGTGACCAATAC
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protein sequence of EsuBft962_2a-0001

>EsuBft962_2 ID=EsuBft962_2|Name=EsuBft962_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=40bp
MVAFIAAFLLRAIDSVVSCPIIAAVLDKCTFPSIEQLGRR
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mRNA from alignment at Scaffold_230:70342..71166-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft962_2a-0001 ID=EsuBft962_2a-0001|Name=EsuBft962_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=825bp|location=Sequence derived from alignment at Scaffold_230:70342..71166- (Ectocarpus subulatus male Bft15b)
ATGGTTGCGTTCATCGCAGCCTTCCTGCTACGAGCTATTGACAGCGTGGT
TTCCTGCCCCATCATTGCCGCGGTATTGGACAAGTGTAAGTTCTGCCTCC
CGGGCCCAAACGACCGGTGAGTGCAACTACAGTTGCAGGCACTTTCCCTT
CGATCGAACAACTCGGGCGGCGGTAGCCACTGGCCGTTCTTGTAGGATAG
CAGGTTTAGGAACCTGTCGTCAGAGGGTGGTGCAAACTTTGCTATTGTTG
AAGGACGGCACACGCTTGATAGAATGGCGGACCACGAGGACTTTTAGGTC
TTGCTATAATTGGGGGGGTTGTTCGCGAAGGAGTTTGTTCGACGGAGCAG
CCGAGTACAGTGGTGGGAGCCGCTCAGTTTTGCTCCGTGACATATGTTTC
CATACCCCCTACAATTGTAGTCGCTCGGCGTGATAAGTATTTACTGCACA
CATGCATACAACACACGCGTGTCTCCTTCTCATCCAGAAACACAAGTCTC
ATGTCTGGCCTGCCTGCTATTATGTGATCCCTGTTGGGGCGTCCAACGGC
GTTCTGAGTGGTGAAAAATGGACGTCTGGAGTACACAAGATGACAACACA
CACAAACTTGTGCACGGAGTAGAACCGCTCCGCGGGGCGTTGTTTTCTTT
ACCCTTTTGGGTCTACAGGCGTCCTGAATGATCATTGATTGATCACTTGC
AAATGATGGTGTGGTGGCATGCCATGGAGTTGTTGCCCTGTATTCCTCCA
CGCCAGGTGTTGGCAAGTCAATAGGTAGGTGTGTCTTTATTATTTGCATC
GACCGCGCTACCCGGTGACCAATAC
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Coding sequence (CDS) from alignment at Scaffold_230:70342..71166-

>EsuBft962_2a-0001 ID=EsuBft962_2a-0001|Name=EsuBft962_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=123bp|location=Sequence derived from alignment at Scaffold_230:70342..71166- (Ectocarpus subulatus male Bft15b)
ATGGTTGCGTTCATCGCAGCCTTCCTGCTACGAGCTATTGACAGCGTGGT
TTCCTGCCCCATCATTGCCGCGGTATTGGACAAGTGCACTTTCCCTTCGA
TCGAACAACTCGGGCGGCGGTAG
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