EsuBft959_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft959_7a-0001
Unique Name	EsuBft959_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_329	contig	Scaffold_329:64603..66528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LR92
ProteomeId	EsuBft959_7
Protein domains	IPR003591
Protein domains	SM00364
Protein domains	IPR001611
Protein domains	SSF52058
Protein domains	G3DSA
Protein domains	PTHR24365
Owner	apollo_admin@sb-roscoff.fr
Note	leucine-rich repeat-containing g-protein coupled receptor 4 os:mus musculus gn:lgr4 pe:1 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1926
Hectar predicted targeting category	other localisation
Evalue	1.06e-274
EggNOG OGs	COG4886@1\|root,KOG4237@2759\|Eukaryota
Ec32 ortholog description	Hypothetical leucine rich repeat protein
Ec32 ortholog	Ec-06_003430.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	corticospinal neuron axon guidance through spinal cord
COG category	KLT

Cross References

External references for this mRNA


Database	Accession
GO	0031227
GO	0051239
GO	0043231
GO	0006928
GO	0007409
GO	0004871
GO	0048583
GO	0006935
GO	0003333
GO	0006024
GO	0001656
GO	0007420
GO	0048523
GO	0007165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft959_7a	EsuBft959_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_329 64603..66528 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_7a-0001-exon	EsuBft959_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_329 64603..66528 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_7a-0001-cds	EsuBft959_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_329 64603..66291 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_7a-0001-exon	agat-three_prime_utr-23503	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_329 66292..66528 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_7a-0001	EsuBft959_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_329 64603..66291 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_329:64603..66528+
coding sequence from alignment at Scaffold_329:64603..66528+

spliced messenger RNA

>EsuBft959_7a-0001 ID=EsuBft959_7a-0001|Name=EsuBft959_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1926bp|location=Sequence derived from alignment at Scaffold_329:64603..66528+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCTTTGCTCAGGTACCTCGATCGAAATTCCCTCGTCGCGCTTCC
GGGAGAAATTTTCTCGGGCCTCGACCAGCTCGAGCGACTGTCGCTGCACC
AGAACTCCCTCTCCACGCTCCACGCGGACACCTTCATGGGGCTCACCGGG
CTGCAGGAGCTTTCGCTGACCTCGAACCCCGACCTCCAATGCGTCCCGGC
AAACGACGCCGTCACCCTCGAGGTGGACGACACGACCGTCGGCACGTGCG
GGTGCGCCCCGGCCGAGGCGGTGATGTGCGGGGACGGCGTGTTCTGCATC
CCCGGGGAGCTCGGCTACTCGTGCGGGACTCCGGCCCCGACTCCGGCGCC
GACTCCGGGGCCGACAGGCCCTCCCTCGCCCGCGCCATCGCCGGCGCCAA
CGCGCGCCAAGAACCCTTGCCTCGACCCGGCCAGCGAGGCCTACCTCTGC
AGCGTCAACGGGACCGAGATCCACCTTGACTACTGCGGGATCACGGACGA
CGACCTGGAGGATGTCGAGATGTGCCTGGACGTCTTGGGGCGGGGCTCCA
TGACGGCCTTGTACGTGCGGTTCAACTACCTGACGACAATTCCCGAGGGA
CTGTTCGACGGGCTCGCATACCTCAAAAAGTTGTACCTGAACAACAATGG
GTTGAGCGAGACGCCATCCGCAGAGAGTTTCCAAGCTCTGGGGAACCTGC
AGGTCCTGAACTTGAATGGAAACTCTCTGACCGCGCTGCCTACGGACCTT
TTCCGGGGCTTGGGGCAGCTCCGACACCTGTGGATCAACATGAACCTGCT
CACCACGCTCCCCGCAGAGCTGTTCGAGGGCCTTCCGCAGCTTGAATCGC
TGGACCTCCGGCTGAATCCCGAGCTACAGTGCGTTCCCGCAAGCGCCGCC
GACAATGTGGAGACCACCGAAATCTCTTCTGGGGTGTGCGGATGCTCCCT
GGCACCGGCCGTCTTGTGCGATGCCGGTCTGGCCTGCGTGCCGGGAGAGC
TCGGTTTCACCTGCGCGACATCAGCTCCAACGCCGGCCCCGGTCCTGCCG
GGGAACAATACCTGCCTGGACCCTGCGAGTGAGCACTACGTGTGCGGCAC
GCCCGGGACGGAGCTGGACTTGGCGTACTGTGGCATCACGGACGACAACC
TGGAAGAATTGGCGGCGTGCATGGATGTCTTCGGGAGAGACGCCGTGAAG
GAAGTCCGCCTCGGGTACAACTACCTGACCACCTTCTCGGGAGACCTGTT
CCACGGACTCACGCACGTCGAGAGTATTTTCCTGAACGACAACAGCCTCG
TCAGCGTCCCGGCCGAGGCATTCCAGGGCCTACAGGCGCTACAGGTTCTG
AACTTGAACCGGAACTCGCTGATCGGCATCCCTGCGAGTGTTTTTCAGCC
GCAGGAAACCAACTCTACTGGACCCGGACATCTCCAAGACATCTGGATAA
ACATGAATCTGCTCAGCACTCTACCTGCCGGGCTGTTTGACGGGCTGGAT
ATGCTGACTTCGCTGGACCTTCGGCTGAACCCCGACCTGCAGTGCGTACC
CACCACAAACGGCGCCGTTTCTGTTAGCGTCGAAGGCCTATCCTCTGACG
TGTGTGGATGCTCTCCACCTCAAGCGGTCGTGTGTACTGCGGGGCAAGTC
TGTGTCCCAGGAGAATTCGGCTACACCTGCGCCTCATGATGATACCCGTC
ATAGCTTTTTGCGTGCCGGCTCGGATTAGGCCGGCAAGAGTCCTGTGATG
CCTCACACGTGCCATAGTAATCCTCTGGGAAAACCCTTCTAACCTATCCA
AGCGAGACAATATTTGCATGCCCCCGTGGACGGACTCCGCGTCCGATGCA
CAATATTCGGGCTACCAGGCTACATGCGTAGCGGAGCATATACTATAAAT
GTTGCCATTCTTTCGGAGAACTTGCC

protein sequence of EsuBft959_7a-0001

>EsuBft959_7 ID=EsuBft959_7|Name=EsuBft959_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=562bp
MFPLLRYLDRNSLVALPGEIFSGLDQLERLSLHQNSLSTLHADTFMGLTG
LQELSLTSNPDLQCVPANDAVTLEVDDTTVGTCGCAPAEAVMCGDGVFCI
PGELGYSCGTPAPTPAPTPGPTGPPSPAPSPAPTRAKNPCLDPASEAYLC
SVNGTEIHLDYCGITDDDLEDVEMCLDVLGRGSMTALYVRFNYLTTIPEG
LFDGLAYLKKLYLNNNGLSETPSAESFQALGNLQVLNLNGNSLTALPTDL
FRGLGQLRHLWINMNLLTTLPAELFEGLPQLESLDLRLNPELQCVPASAA
DNVETTEISSGVCGCSLAPAVLCDAGLACVPGELGFTCATSAPTPAPVLP
GNNTCLDPASEHYVCGTPGTELDLAYCGITDDNLEELAACMDVFGRDAVK
EVRLGYNYLTTFSGDLFHGLTHVESIFLNDNSLVSVPAEAFQGLQALQVL
NLNRNSLIGIPASVFQPQETNSTGPGHLQDIWINMNLLSTLPAGLFDGLD
MLTSLDLRLNPDLQCVPTTNGAVSVSVEGLSSDVCGCSPPQAVVCTAGQV
CVPGEFGYTCAS

mRNA from alignment at Scaffold_329:64603..66528+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft959_7a-0001 ID=EsuBft959_7a-0001|Name=EsuBft959_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1926bp|location=Sequence derived from alignment at Scaffold_329:64603..66528+ (Ectocarpus subulatus male Bft15b)
ATGTTTCCTTTGCTCAGGTACCTCGATCGAAATTCCCTCGTCGCGCTTCC
GGGAGAAATTTTCTCGGGCCTCGACCAGCTCGAGCGACTGTCGCTGCACC
AGAACTCCCTCTCCACGCTCCACGCGGACACCTTCATGGGGCTCACCGGG
CTGCAGGAGCTTTCGCTGACCTCGAACCCCGACCTCCAATGCGTCCCGGC
AAACGACGCCGTCACCCTCGAGGTGGACGACACGACCGTCGGCACGTGCG
GGTGCGCCCCGGCCGAGGCGGTGATGTGCGGGGACGGCGTGTTCTGCATC
CCCGGGGAGCTCGGCTACTCGTGCGGGACTCCGGCCCCGACTCCGGCGCC
GACTCCGGGGCCGACAGGCCCTCCCTCGCCCGCGCCATCGCCGGCGCCAA
CGCGCGCCAAGAACCCTTGCCTCGACCCGGCCAGCGAGGCCTACCTCTGC
AGCGTCAACGGGACCGAGATCCACCTTGACTACTGCGGGATCACGGACGA
CGACCTGGAGGATGTCGAGATGTGCCTGGACGTCTTGGGGCGGGGCTCCA
TGACGGCCTTGTACGTGCGGTTCAACTACCTGACGACAATTCCCGAGGGA
CTGTTCGACGGGCTCGCATACCTCAAAAAGTTGTACCTGAACAACAATGG
GTTGAGCGAGACGCCATCCGCAGAGAGTTTCCAAGCTCTGGGGAACCTGC
AGGTCCTGAACTTGAATGGAAACTCTCTGACCGCGCTGCCTACGGACCTT
TTCCGGGGCTTGGGGCAGCTCCGACACCTGTGGATCAACATGAACCTGCT
CACCACGCTCCCCGCAGAGCTGTTCGAGGGCCTTCCGCAGCTTGAATCGC
TGGACCTCCGGCTGAATCCCGAGCTACAGTGCGTTCCCGCAAGCGCCGCC
GACAATGTGGAGACCACCGAAATCTCTTCTGGGGTGTGCGGATGCTCCCT
GGCACCGGCCGTCTTGTGCGATGCCGGTCTGGCCTGCGTGCCGGGAGAGC
TCGGTTTCACCTGCGCGACATCAGCTCCAACGCCGGCCCCGGTCCTGCCG
GGGAACAATACCTGCCTGGACCCTGCGAGTGAGCACTACGTGTGCGGCAC
GCCCGGGACGGAGCTGGACTTGGCGTACTGTGGCATCACGGACGACAACC
TGGAAGAATTGGCGGCGTGCATGGATGTCTTCGGGAGAGACGCCGTGAAG
GAAGTCCGCCTCGGGTACAACTACCTGACCACCTTCTCGGGAGACCTGTT
CCACGGACTCACGCACGTCGAGAGTATTTTCCTGAACGACAACAGCCTCG
TCAGCGTCCCGGCCGAGGCATTCCAGGGCCTACAGGCGCTACAGGTTCTG
AACTTGAACCGGAACTCGCTGATCGGCATCCCTGCGAGTGTTTTTCAGCC
GCAGGAAACCAACTCTACTGGACCCGGACATCTCCAAGACATCTGGATAA
ACATGAATCTGCTCAGCACTCTACCTGCCGGGCTGTTTGACGGGCTGGAT
ATGCTGACTTCGCTGGACCTTCGGCTGAACCCCGACCTGCAGTGCGTACC
CACCACAAACGGCGCCGTTTCTGTTAGCGTCGAAGGCCTATCCTCTGACG
TGTGTGGATGCTCTCCACCTCAAGCGGTCGTGTGTACTGCGGGGCAAGTC
TGTGTCCCAGGAGAATTCGGCTACACCTGCGCCTCATGATGATACCCGTC
ATAGCTTTTTGCGTGCCGGCTCGGATTAGGCCGGCAAGAGTCCTGTGATG
CCTCACACGTGCCATAGTAATCCTCTGGGAAAACCCTTCTAACCTATCCA
AGCGAGACAATATTTGCATGCCCCCGTGGACGGACTCCGCGTCCGATGCA
CAATATTCGGGCTACCAGGCTACATGCGTAGCGGAGCATATACTATAAAT
GTTGCCATTCTTTCGGAGAACTTGCC

Coding sequence (CDS) from alignment at Scaffold_329:64603..66528+

>EsuBft959_7a-0001 ID=EsuBft959_7a-0001|Name=EsuBft959_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1689bp|location=Sequence derived from alignment at Scaffold_329:64603..66528+ (Ectocarpus subulatus male Bft15b)
ATGTTTCCTTTGCTCAGGTACCTCGATCGAAATTCCCTCGTCGCGCTTCC
GGGAGAAATTTTCTCGGGCCTCGACCAGCTCGAGCGACTGTCGCTGCACC
AGAACTCCCTCTCCACGCTCCACGCGGACACCTTCATGGGGCTCACCGGG
CTGCAGGAGCTTTCGCTGACCTCGAACCCCGACCTCCAATGCGTCCCGGC
AAACGACGCCGTCACCCTCGAGGTGGACGACACGACCGTCGGCACGTGCG
GGTGCGCCCCGGCCGAGGCGGTGATGTGCGGGGACGGCGTGTTCTGCATC
CCCGGGGAGCTCGGCTACTCGTGCGGGACTCCGGCCCCGACTCCGGCGCC
GACTCCGGGGCCGACAGGCCCTCCCTCGCCCGCGCCATCGCCGGCGCCAA
CGCGCGCCAAGAACCCTTGCCTCGACCCGGCCAGCGAGGCCTACCTCTGC
AGCGTCAACGGGACCGAGATCCACCTTGACTACTGCGGGATCACGGACGA
CGACCTGGAGGATGTCGAGATGTGCCTGGACGTCTTGGGGCGGGGCTCCA
TGACGGCCTTGTACGTGCGGTTCAACTACCTGACGACAATTCCCGAGGGA
CTGTTCGACGGGCTCGCATACCTCAAAAAGTTGTACCTGAACAACAATGG
GTTGAGCGAGACGCCATCCGCAGAGAGTTTCCAAGCTCTGGGGAACCTGC
AGGTCCTGAACTTGAATGGAAACTCTCTGACCGCGCTGCCTACGGACCTT
TTCCGGGGCTTGGGGCAGCTCCGACACCTGTGGATCAACATGAACCTGCT
CACCACGCTCCCCGCAGAGCTGTTCGAGGGCCTTCCGCAGCTTGAATCGC
TGGACCTCCGGCTGAATCCCGAGCTACAGTGCGTTCCCGCAAGCGCCGCC
GACAATGTGGAGACCACCGAAATCTCTTCTGGGGTGTGCGGATGCTCCCT
GGCACCGGCCGTCTTGTGCGATGCCGGTCTGGCCTGCGTGCCGGGAGAGC
TCGGTTTCACCTGCGCGACATCAGCTCCAACGCCGGCCCCGGTCCTGCCG
GGGAACAATACCTGCCTGGACCCTGCGAGTGAGCACTACGTGTGCGGCAC
GCCCGGGACGGAGCTGGACTTGGCGTACTGTGGCATCACGGACGACAACC
TGGAAGAATTGGCGGCGTGCATGGATGTCTTCGGGAGAGACGCCGTGAAG
GAAGTCCGCCTCGGGTACAACTACCTGACCACCTTCTCGGGAGACCTGTT
CCACGGACTCACGCACGTCGAGAGTATTTTCCTGAACGACAACAGCCTCG
TCAGCGTCCCGGCCGAGGCATTCCAGGGCCTACAGGCGCTACAGGTTCTG
AACTTGAACCGGAACTCGCTGATCGGCATCCCTGCGAGTGTTTTTCAGCC
GCAGGAAACCAACTCTACTGGACCCGGACATCTCCAAGACATCTGGATAA
ACATGAATCTGCTCAGCACTCTACCTGCCGGGCTGTTTGACGGGCTGGAT
ATGCTGACTTCGCTGGACCTTCGGCTGAACCCCGACCTGCAGTGCGTACC
CACCACAAACGGCGCCGTTTCTGTTAGCGTCGAAGGCCTATCCTCTGACG
TGTGTGGATGCTCTCCACCTCAAGCGGTCGTGTGTACTGCGGGGCAAGTC
TGTGTCCCAGGAGAATTCGGCTACACCTGCGCCTCATGA