EsuBft959_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft959_2a-0001
Unique Name	EsuBft959_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_329	contig	Scaffold_329:679..1603 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft959_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	92
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft959_2a	EsuBft959_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_329 679..1603 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_2a-0001-exon	EsuBft959_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_329 679..1603 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_2a-0001-cds	EsuBft959_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_329 679..1062 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_2a-0001-exon	agat-three_prime_utr-23499	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_329 1063..1603 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft959_2a-0001	EsuBft959_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_329 679..1062 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_329:679..1603+
coding sequence from alignment at Scaffold_329:679..1603+

spliced messenger RNA

>EsuBft959_2a-0001 ID=EsuBft959_2a-0001|Name=EsuBft959_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=925bp|location=Sequence derived from alignment at Scaffold_329:679..1603+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGAGCCTTCGTCAAGGCGAAAATGAAGCAGAAGAAGCTCGCCAT
CACCCGCAAGTCGCAAGGTCTCCCGGAAGGAGGGGTTATCACGTGCGATG
ACGTCATGCAAAAATACCTCGAGGACGAACGCCAGAAGGTCGAGGCCGTG
GAAGCTCTGAAAGAAAAAAGAATGGCACGGGAGATCAAGAGGGCAGCGAG
GGAAGCTGCGAGCTTGGAACAGGGGGCAAACCGCGCAGGGCGTGGGCATG
GACGGGGAGGAGGGCGAGGCGACACAAGGGGTGAAGGCTCTAGTGGGCGG
GAGGTCAGGGGCAAGGGCGGGGGCGAAGAGAAGGAAGGGGCGGGCGTGGG
ATGGGCGGCGCGGCGGGCGGGGGGGCGTTCGTGATCAAGTGGGGGAGGGG
ATTGTGGCGAATGCCACTGGGCGGGGTGCTGGTCGTGGTCGAGTGGTCGG
AGGGGTAGTGGGGAATGCCGGCGTATCCAGGTCAGGGCGAACGCTGACGC
CGGCACGCGTAGTCGACGTGTAGGTTTTTCTGTACCGATCCGAACTCAAC
CTAGTTTGATTCCAAATCGGTTGAAACCGCCCTTGGAATTGGCAAGGAGT
CGGCAATCAAATGGTTGGAGTTTTTTTTTGGAGCGTCGAGCAGTTCTGCG
ATTGTACGAGGCCACGCTGTACTATACCGTTCTAGCGGTTTGAATCAGTT
TCTGACTGGAAAAATCCGGGGATGTGACCACTCTGTCCCCGGTTGGGGTC
TCCTCCCCCCCGTTTGTATTTACTTGCTCCTTGCTTTAGTGTCGAGGTCT
GTGTCAAACGGCGAATCATGGGGTGAAAGCGAAGCAGAGAAAAACAGGAG
ATGCAGCGTCGTGCATATCGGGACTGGGGGTTGCCGTAGACGGACGCGAA
CACCGGTAAATGCACCCGCTTCGTA

protein sequence of EsuBft959_2a-0001

>EsuBft959_2 ID=EsuBft959_2|Name=EsuBft959_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=127bp
MLGAFVKAKMKQKKLAITRKSQGLPEGGVITCDDVMQKYLEDERQKVEAV
EALKEKRMAREIKRAAREAASLEQGANRAGRGHGRGGGRGDTRGEGSSGR
EVRGKGGGEEKEGAGVGWAARRAGGRS

mRNA from alignment at Scaffold_329:679..1603+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft959_2a-0001 ID=EsuBft959_2a-0001|Name=EsuBft959_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=925bp|location=Sequence derived from alignment at Scaffold_329:679..1603+ (Ectocarpus subulatus male Bft15b)
ATGCTCGGAGCCTTCGTCAAGGCGAAAATGAAGCAGAAGAAGCTCGCCAT
CACCCGCAAGTCGCAAGGTCTCCCGGAAGGAGGGGTTATCACGTGCGATG
ACGTCATGCAAAAATACCTCGAGGACGAACGCCAGAAGGTCGAGGCCGTG
GAAGCTCTGAAAGAAAAAAGAATGGCACGGGAGATCAAGAGGGCAGCGAG
GGAAGCTGCGAGCTTGGAACAGGGGGCAAACCGCGCAGGGCGTGGGCATG
GACGGGGAGGAGGGCGAGGCGACACAAGGGGTGAAGGCTCTAGTGGGCGG
GAGGTCAGGGGCAAGGGCGGGGGCGAAGAGAAGGAAGGGGCGGGCGTGGG
ATGGGCGGCGCGGCGGGCGGGGGGGCGTTCGTGATCAAGTGGGGGAGGGG
ATTGTGGCGAATGCCACTGGGCGGGGTGCTGGTCGTGGTCGAGTGGTCGG
AGGGGTAGTGGGGAATGCCGGCGTATCCAGGTCAGGGCGAACGCTGACGC
CGGCACGCGTAGTCGACGTGTAGGTTTTTCTGTACCGATCCGAACTCAAC
CTAGTTTGATTCCAAATCGGTTGAAACCGCCCTTGGAATTGGCAAGGAGT
CGGCAATCAAATGGTTGGAGTTTTTTTTTGGAGCGTCGAGCAGTTCTGCG
ATTGTACGAGGCCACGCTGTACTATACCGTTCTAGCGGTTTGAATCAGTT
TCTGACTGGAAAAATCCGGGGATGTGACCACTCTGTCCCCGGTTGGGGTC
TCCTCCCCCCCGTTTGTATTTACTTGCTCCTTGCTTTAGTGTCGAGGTCT
GTGTCAAACGGCGAATCATGGGGTGAAAGCGAAGCAGAGAAAAACAGGAG
ATGCAGCGTCGTGCATATCGGGACTGGGGGTTGCCGTAGACGGACGCGAA
CACCGGTAAATGCACCCGCTTCGTA

Coding sequence (CDS) from alignment at Scaffold_329:679..1603+

>EsuBft959_2a-0001 ID=EsuBft959_2a-0001|Name=EsuBft959_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=384bp|location=Sequence derived from alignment at Scaffold_329:679..1603+ (Ectocarpus subulatus male Bft15b)
ATGCTCGGAGCCTTCGTCAAGGCGAAAATGAAGCAGAAGAAGCTCGCCAT
CACCCGCAAGTCGCAAGGTCTCCCGGAAGGAGGGGTTATCACGTGCGATG
ACGTCATGCAAAAATACCTCGAGGACGAACGCCAGAAGGTCGAGGCCGTG
GAAGCTCTGAAAGAAAAAAGAATGGCACGGGAGATCAAGAGGGCAGCGAG
GGAAGCTGCGAGCTTGGAACAGGGGGCAAACCGCGCAGGGCGTGGGCATG
GACGGGGAGGAGGGCGAGGCGACACAAGGGGTGAAGGCTCTAGTGGGCGG
GAGGTCAGGGGCAAGGGCGGGGGCGAAGAGAAGGAAGGGGCGGGCGTGGG
ATGGGCGGCGCGGCGGGCGGGGGGGCGTTCGTGA