EsuBft957_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft957_11a-0001
Unique Name	EsuBft957_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:278039..279473 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft957_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	116
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft957_11a	EsuBft957_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 278039..279473 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft957_11a-0001-exon	EsuBft957_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 278039..278841 -
EsuBft957_11a-0001-exon	agat-exon-32338	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 279019..279128 -
EsuBft957_11a-0001-exon	agat-exon-32339	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 279219..279473 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft957_11a-0001-exon	agat-three_prime_utr-23470	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 278039..278363 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft957_11a-0001-cds	EsuBft957_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 278364..278841 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft957_11a-0001	EsuBft957_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 278364..279473 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:278039..279473-
coding sequence from alignment at Scaffold_68:278039..279473-

spliced messenger RNA

>EsuBft957_11a-0001 ID=EsuBft957_11a-0001|Name=EsuBft957_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1168bp|location=Sequence derived from alignment at Scaffold_68:278039..279473- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCATTTCTCGGCTTCCGGTCCGGTCGTTTGCATGAGGTGCTGCTT
GGGCACGCCGGAGTGCAATTCCACCAGCAATCCTTGTGCCGAGCTTCCCA
TAGCTTGCACCAACAAGATCACGCCTCATCTCCATCGCGATTATGACATG
ATCCCGAAACTATTCGCCGCCATCCAACCGCACATGGCCGTCGATTGCGG
ACTGCACACGAAGGACGGCATACAAATCCCATCCGCTATGTCCATCGGAA
CGAAGCAAAACATCGCCATGTACTTCTACTCCTTCCATCGCGTCTGCTCT
TCCACTCCTTCCATTTCCTTCGCCGCCCTGTTCTTGCACAACGCGACGCG
AGGTGTACCGAACGGGCTGCTCAAGAGGAGCTTTTTTGTGACAGTAAGGA
ACTCGTCGATCTCGACGGCCATGACCAAGAACGTCCGCGCCAGCTACATC
CTCGGCATCACCTTCATCGCCGCTGTCGAGAAGAAGAAATGGGGGCACCA
GAACTGTTGGGGCTACCACATCGCCGCCCTCTCCAACGACGTCACCATCA
TCGAACGCCTATCAAAGACGCCCACCGTAGAAGCGAATGATCTCGCCTCT
CGCCCTACCGCCGGTGCCGGCGCCTCTTCCAACTGCCCCGGCACGAACGA
AAAACGGAAGGTTCCCTCAGGCGCGCGACGAAAGCGTAAAACCGCAAGGT
CCGATCCCCATTCCGTCCCCGCGCCGACTCTTCTGGAGAAGAACCCGAAG
AAGAGGAAACCAACGACGACTACCCCAACGACGAACAGGACCCCGGCTTT
CCCCCCGGCGACGAAGGAGACGACAAAGAAGACAAAGACGTAGACGACGA
CGACACTGACAATGGCGACAACCGCGGCAACGACGACAACGACGATGCCG
ACTCCGATGACGCCGCCTCCGACGACGGCTATGACACCGAATGGTGTCTC
CGTTTATCTGCCTTCCTTTGTTCGTTTTTTTGCCCTGAAGTCGGCCACCC
CTCTGCATCACAGTGTCCGCTTCGGTCTTTCCCGGCGTATGTTTTGCGTG
TTTGTTCGCTGTTGCTTTCGCGTGTCTTCGGCTGTCCTTTCTTGAGTACT
TTTTGATTGTGTCCATCTTGAGTGCTTTTCTACGAATCTTCATTCCAAAC
GATCGTTGAGAGTACTTT

protein sequence of EsuBft957_11a-0001

>EsuBft957_11 ID=EsuBft957_11|Name=EsuBft957_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=280bp
MVHFSASGPVVCMRCCLGTPECNSTSNPCAELPIACTNKITPHLHRDYDM
IPKLFAAIQPHMAVDCGLHTKDGIQIPSAMSIGTKQNIAMYFYSFHRVCS
STPSISFAALFLHNATRGVPNGLLKRSFFVTVRNSSISTAMTKNVRASYI
LGITFIAAVEKKKWGHQNCWGYHIAALSNDVTIIERLSKTPTVEANDLAS
RPTAGAGASSNCPGTNEKRKVPSGARRKRKTARSDPHSVPAPTLLEKNPK
KRKPTTTTPTTNRTPAFPPATKETTKKTKT

mRNA from alignment at Scaffold_68:278039..279473-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft957_11a-0001 ID=EsuBft957_11a-0001|Name=EsuBft957_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1435bp|location=Sequence derived from alignment at Scaffold_68:278039..279473- (Ectocarpus subulatus male Bft15b)
ATGGTGCATTTCTCGGCTTCCGGTCCGGTCGTTTGCATGAGGTGCTGCTT
GGGCACGCCGGAGTGCAATTCCACCAGCAATCCTTGTGCCGAGCTTCCCA
TAGCTTGCACCAACAAGATCACGCCTCATCTCCATCGCGATTATGACATG
ATCCCGAAACTATTCGCCGCCATCCAACCGCACATGGCCGTCGATTGCGG
ACTGCACACGAAGGACGGCATACAAATCCCATCCGCTATGTCCATCGGAA
CGAAGGTATGTGTTTTTTTTGGGTCCGAATTTTCGACGCCATAAGTTCGT
TTCCATGAACATTTAACTTGCTCCCTGTTCCCCACTAGGTAACAGCAAAA
CATCGCCATGTACTTCTACTCCTTCCATCGCGTCTGCTCTTCCACTCCTT
CCATTTCCTTCGCCGCCCTGTTCTTGCACAACGCGACGCGAGGTGTACCG
AACGGGTATTTGCGTCACATATTTTGGCATTCATGGTGTCGTGTATTTTC
AACCGTACGTTCTGCCGCCTGTGCGATCATTCTGACTCATACACACCTGT
ACGATTTGCTTGACACGACCTGTTGGTCATTTTCGACCCTCCGCAACTTT
CCTATCTCTCTTCCTCTTTGCCCTTTCCTCAGGCTGCTCAAGAGGAGCTT
TTTTGTGACAGTAAGGAACTCGTCGATCTCGACGGCCATGACCAAGAACG
TCCGCGCCAGCTACATCCTCGGCATCACCTTCATCGCCGCTGTCGAGAAG
AAGAAATGGGGGCACCAGAACTGTTGGGGCTACCACATCGCCGCCCTCTC
CAACGACGTCACCATCATCGAACGCCTATCAAAGACGCCCACCGTAGAAG
CGAATGATCTCGCCTCTCGCCCTACCGCCGGTGCCGGCGCCTCTTCCAAC
TGCCCCGGCACGAACGAAAAACGGAAGGTTCCCTCAGGCGCGCGACGAAA
GCGTAAAACCGCAAGGTCCGATCCCCATTCCGTCCCCGCGCCGACTCTTC
TGGAGAAGAACCCGAAGAAGAGGAAACCAACGACGACTACCCCAACGACG
AACAGGACCCCGGCTTTCCCCCCGGCGACGAAGGAGACGACAAAGAAGAC
AAAGACGTAGACGACGACGACACTGACAATGGCGACAACCGCGGCAACGA
CGACAACGACGATGCCGACTCCGATGACGCCGCCTCCGACGACGGCTATG
ACACCGAATGGTGTCTCCGTTTATCTGCCTTCCTTTGTTCGTTTTTTTGC
CCTGAAGTCGGCCACCCCTCTGCATCACAGTGTCCGCTTCGGTCTTTCCC
GGCGTATGTTTTGCGTGTTTGTTCGCTGTTGCTTTCGCGTGTCTTCGGCT
GTCCTTTCTTGAGTACTTTTTGATTGTGTCCATCTTGAGTGCTTTTCTAC
GAATCTTCATTCCAAACGATCGTTGAGAGTACTTT

Coding sequence (CDS) from alignment at Scaffold_68:278039..279473-

>EsuBft957_11a-0001 ID=EsuBft957_11a-0001|Name=EsuBft957_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=843bp|location=Sequence derived from alignment at Scaffold_68:278039..279473- (Ectocarpus subulatus male Bft15b)
ATGGTGCATTTCTCGGCTTCCGGTCCGGTCGTTTGCATGAGGTGCTGCTT
GGGCACGCCGGAGTGCAATTCCACCAGCAATCCTTGTGCCGAGCTTCCCA
TAGCTTGCACCAACAAGATCACGCCTCATCTCCATCGCGATTATGACATG
ATCCCGAAACTATTCGCCGCCATCCAACCGCACATGGCCGTCGATTGCGG
ACTGCACACGAAGGACGGCATACAAATCCCATCCGCTATGTCCATCGGAA
CGAAGCAAAACATCGCCATGTACTTCTACTCCTTCCATCGCGTCTGCTCT
TCCACTCCTTCCATTTCCTTCGCCGCCCTGTTCTTGCACAACGCGACGCG
AGGTGTACCGAACGGGCTGCTCAAGAGGAGCTTTTTTGTGACAGTAAGGA
ACTCGTCGATCTCGACGGCCATGACCAAGAACGTCCGCGCCAGCTACATC
CTCGGCATCACCTTCATCGCCGCTGTCGAGAAGAAGAAATGGGGGCACCA
GAACTGTTGGGGCTACCACATCGCCGCCCTCTCCAACGACGTCACCATCA
TCGAACGCCTATCAAAGACGCCCACCGTAGAAGCGAATGATCTCGCCTCT
CGCCCTACCGCCGGTGCCGGCGCCTCTTCCAACTGCCCCGGCACGAACGA
AAAACGGAAGGTTCCCTCAGGCGCGCGACGAAAGCGTAAAACCGCAAGGT
CCGATCCCCATTCCGTCCCCGCGCCGACTCTTCTGGAGAAGAACCCGAAG
AAGAGGAAACCAACGACGACTACCCCAACGACGAACAGGACCCCGGCTTT
CCCCCCGGCGACGAAGGAGACGACAAAGAAGACAAAGACGTAG