EsuBft956_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft956_8a-0001
Unique NameEsuBft956_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_330contigScaffold_330:859576..864685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FYX0
ProteomeIdEsuBft956_8
Protein domainsIPR006153
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsPTHR16254
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notek( ) efflux antiporter 5 os:arabidopsis thaliana gn:kea5 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length2185
Hectar predicted targeting categorysignal anchor
Evalue3.35e-162
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameTMCO3
GOsGO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0034220,GO:0051179,GO:0051234,GO:0055085,GO:0098655
Descriptionsolute:proton antiporter activity
COG categoryP
Cross References
External references for this mRNA
DatabaseAccession
GO0055085
GO0016021
GO0015672
GO0030001
GO0015299
GO0015079
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft956_8aEsuBft956_8aEctocarpus subulatus male Bft15bgeneScaffold_330 859576..864685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_8a-0001EsuBft956_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_330 860894..864685 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_8a-0001-exonagat-exon-33259Ectocarpus subulatus male Bft15bexonScaffold_330 859576..861247 -
EsuBft956_8a-0001-exonagat-exon-33261Ectocarpus subulatus male Bft15bexonScaffold_330 861815..861958 -
EsuBft956_8a-0001-exonEsuBft956_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_330 862802..862933 -
EsuBft956_8a-0001-exonagat-exon-33262Ectocarpus subulatus male Bft15bexonScaffold_330 863704..863793 -
EsuBft956_8a-0001-exonagat-exon-33260Ectocarpus subulatus male Bft15bexonScaffold_330 864539..864685 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_8a-0001-exonagat-three_prime_utr-23467Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_330 859576..860893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_8a-0001-cdsEsuBft956_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_330 860894..861247 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft956_8a-0001 ID=EsuBft956_8a-0001|Name=EsuBft956_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2185bp|location=Sequence derived from alignment at Scaffold_330:859576..864685- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCCGTGGAGGAGTCTCAGGGCACGACGGGGTCGTTTGTGCCTCG
AATCGCCGGGTGCGCGATACTGCTGCTGGCCTTCGTGATCGCCTCGAGGA
GGGTGCTGCCGATGGCCATGGCCCGGCTGGTGCTCAAGGACAAGCAGGAG
CAATCGTCCGGTCTCTTCACCCTGGCGGTGGTGAGCTACTGCCTCGGTGT
CGCTCTTGTCTGCGAGCGCCTCGACCTGAGTCACGAGGCCGGAGCTCTCT
TTGCCGGGCTGCTGATGGTCGACTCCCCCTTCGCCCAGAAGGCCCACGCG
AGAATGCAGCCGTTGACGAGCCTCTTCGGAGGGATGTATCTCGGCTCTCT
CGGCATGATCGTCAACCCGGCCTTCATGGTGTGGAACTTCGGAGATGTGC
TTGGGTGCGTGGTGATGCTGGTGTTAATAAAGCTCCTGATCGTGGCGATG
GTCATGAAGTCCTTCGGCTTTTCGTGGGAGGCCTCTACGCTCGCGGGCGC
GTGCATGGCTCAGGTCTCCGAGATCTCGCTCTTCTTCGTGGCGAGGGCCC
AGCACCTCAAGCTCATCAGCCGGCATCACTACCTCATGACCGTGGCGACG
ACGGTCATCCTCATGGTGGCGTCCCCGCTCGTGATCAAGGGCCTTCAGGC
CGTCCATGGAGGCGCTGCCTGCGGGGAGGGCGGTGCCACCTGCAGCAGCC
CCCGCAACGGGACCGGCACCGGCGGCGGCGGCGGCGGCGGTCGTGGGGTT
GGGGAAAGCGGCGGGGCGGAAGACTCGATCCTCCCGTTGATTGGCGGGCG
CGGGAGGGGTCGGAGCCGCGGACATGGGGAGACGCCGACGTGGAAGGAGA
GGTGCAAGGGAAGTTGAGAGTGTTCCGTCGAAGGGGAGGCCGTGCGCTGG
ACGGAGTTTTGTGTTTGCTTGGTTTTACTTCTCAAGACGGAGATGGTGCG
GTCGCGAGGCTGAGGAGGCAGGCGCGGGACCTATGTGGTGATATGCCAGA
GGGGCGGTGGGAACATGTCTCCGTTTGTTGGCGTGTGTGCTTTGGAGAAG
TTAGCTTCCCTTTATGGTTTCTGAGATCGCGAGTTGGTGTTTTGTGTCGC
GTGTTGTGCCGACGAGCTGTGCCGACGAGCTGTGCCGACGAGCATCATCG
CTGATTTTCAGGAGCGACGGGAAGACAGGGTCAGTCTACCAGCCGTGTTT
GTCGTTGTACCCTTGACCTTTTTCGGCAAGGTTCGGCGAGGTGTGACTAT
AGGCGAGGGAATACTCGGTCTCATTGCGGCAGTCGATCGGTTCTCAGGTG
CGGGCTTGATGTCCATGCGTGCGGTGGAATGTCGTTACCTCTGCCGCTCC
GTGAGTTTTTTTCTCCATAGAACAATGTAACCTGCCAGTATAGTTTTTTT
TTTTCTCTCCCATCGCTCCTCCGCGGTTGGCTTTGGGCTGGCCTCGTGAA
CCTATCCCCCACGACATTGCTTCATTAGACGAAGATCCAGGGCCCTTGTA
AGACGTAGATCCGAGCTTGTTTGTGTACGTGTCAGAAGGACAAGTGCCCA
CCGCTGCTGTAGAAGCCGTGCTGGTAGTGGGGGGCATCTCGAAGTGTCCG
GATCTGGCGGTTGTTGCATCCTGTTGGTGTCCTGAGCTTAAGAGTTGCCG
TCTCAGCCGATGTTTTCAATTGTTCCCAGGATGCTCGGTGAGCAAGCCGA
GACAGAAGCGGTCCTTCGACTGTTGTGGTTCTGTAGGTGGGGAGCTGTCG
TTGGTTATTTGTACAGCATTTGAAGCACATTGAGGTATTTTATTATCGTT
CCCCGTATTAGGTAGCTGTCAGAGTAGATAGTTGCGCCGTTGTGGGATCT
CTCCGCCTTATCAGGGCGCGAGATCTCGATGGAACGTTCTTCAGATACTC
ACTAAAGGCCCGCCTTGTCTAGTAAGAAGTAGTTGGCGTGCCTCTTCAAA
TCCTCTATGCGTGAGTCTAGTCTTCCCGGATGATGATGTTGCGGGGATAA
ATAAATCTTCACGAAAGAAAAGTCGGTCGCCGGAAATTATGGCACCGGGC
GAGGCTTGTGTTTGTTCCGGCACTTTCTGTTTCGTGAAAGTCACTATCGT
TTGTTCTATTTCATTCGTAATATTCTGTTTTTCTTTTTGCGCACTGCATG
TCCTAGTTTTTTCTGTTTCATTCGTATCATTATGC
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protein sequence of EsuBft956_8a-0001

>EsuBft956_8 ID=EsuBft956_8|Name=EsuBft956_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=288bp
MYAVEESQGTTGSFVPRIAGCAILLLAFVIASRRVLPMAMARLVLKDKQE
QSSGLFTLAVVSYCLGVALVCERLDLSHEAGALFAGLLMVDSPFAQKAHA
RMQPLTSLFGGMYLGSLGMIVNPAFMVWNFGDVLGCVVMLVLIKLLIVAM
VMKSFGFSWEASTLAGACMAQVSEISLFFVARAQHLKLISRHHYLMTVAT
TVILMVASPLVIKGLQAVHGGAACGEGGATCSSPRNGTGTGGGGGGGRGV
GESGGAEDSILPLIGGRGRGRSRGHGETPTWKERCKGS
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mRNA from alignment at Scaffold_330:859576..864685-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft956_8a-0001 ID=EsuBft956_8a-0001|Name=EsuBft956_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5110bp|location=Sequence derived from alignment at Scaffold_330:859576..864685- (Ectocarpus subulatus male Bft15b)
ATGTACGCCGTGGAGGAGTCTCAGGGCACGACGGGGTCGTTTGTGCCTCG
AATCGCCGGGTGCGCGATACTGCTGCTGGCCTTCGTGATCGCCTCGAGGA
GGGTGCTGCCGATGGCCATGGCCCGGCTGGTGCTCAAGGACAAGCAGGTG
CGACGACGCTCGTCTTTTGTGAGTTTTTGTGGTCGCGCGTGCTGCTTCGG
TGTGCTGCAGCCTCGTGTCGTTGACGACCGTTTTTTTTTCTTTTCGCGTC
TTTTTTGCCAGGCGAGGAAAATCTTTGGGCCCATTTCCCGTTGGGGATGT
GTATGTTGTTTGTCTCCATGTTGCGACCCCGTCCTTCTTCGTTGCATCCG
CAAAAGTTGTCGGTCTCGAGGACAAGGAGCACGAGAGGTGCTCGTGTTTC
ATTTCTTTGCCCTCCCTGTGTGTGGTTCCTTGTTTAGGAGGTGGCTGCAC
TCTCCGTTTGCCGGAGTTACCTTGCGCCGGATCCTTGTTTTCGTCAGAGC
ATTGGTTGCTCTACCTTGAGCCGTTTCTTGTTTTTTTCTTGGCCGTTTTG
GTGGTGTTGATTTTGTGTTGCTGTTGTCCGGTGTGTCGGTTGCTGGTGTC
GCTGTGGCCGGCTTCGAGGGGCAGCGAACCAATCGGGTGCGCGTCCGGAC
GGTATTATTCTGCCGTTGAGCACCTCGAGCAGAAATCCACCTTCTCCCCC
CAATCGAAGCATGGCTTTCCGCACAGACGTCTCCTCTCGAATGTCTTCGT
CGCGCTTGCGGTTTTCCTGCGCCCCCTTCCCACCCTGCGAGTCGATGGTC
GAACCGCACCCCCCTGGCATGATGCCCATCAGCACCCTTCTCCCTCGAAC
GGTGTGGCGTGCTGTTCGTAAATCGGTGGCTTGGCTTTGCAGGAGCAATC
GTCCGGTCTCTTCACCCTGGCGGTGGTGAGCTACTGCCTCGGTGTCGCTC
TTGTCTGCGAGCGCCTCGACCTGAGTCACGAGGTAGGATACCGTGGGTGG
TACATGATAGATACGCAGCCCCTGGGCCTGTTTTCAATGCTCCATATTTC
GATATCTCTTGCGCGAAATCGATGACCGCGCCGATAATGGCGGCGTCAGA
ACCTGAGGGGTTTCCGAAAACGTGCCATTTGATGCTTGGGATTCACTTCG
TCTTTGCAGCAGTCGGACGGGCTTTGAAAATCGGCGCAGGCGGTGTGGTT
TCTTATGCAACGTTCGGTGTTGCCAGTCTGTCAACAACTGCTCAGGGCAG
AAGTAGTAGTGGCAAGGACGCAAGCAATCCCCCCGTTATTTCACACGCAG
ATTTCTGCGGGAAAAAAACTTGAACAGCACCGGAACACCTGTGCTCATCG
GGTGCCCCACAAAAACGCTGGAACAGCCGTTGGTGTTGTCAGACAAGTGT
GAATGAAGACTTTGCCTTCCCCGAAGAAGGCGATCGCGCTTGCCTGTGTG
CCTGGGCTGGGAATGCTGTTCGTTTCGGTGTGTTTACGAAATTGCGCCAC
TCTTGTCTCTTGGTCGCTTCTCCCTCACCCTCACTCGCCCTTCCCCCCTT
TCTCCGATCATTTCTGTGTGGTTCTTGGGGCGCGCGCGCGCCTTCGATCG
ACCCATCGTACGTATCGACTATTTTTTCTGACGGGAACGGGGGAAACCAC
TGCCAACACGACCACCACCACCAACACACCAACAACATCAACAACGACGA
CGACGACGACGACGACGACGGCGGCGGAATGATGACCCAACACATGATCC
AGGCCGGAGCTCTCTTTGCCGGGCTGCTGATGGTCGACTCCCCCTTCGCC
CAGAAGGCCCACGCGAGAATGCAGCCGTTGACGAGCCTCTTCGGAGGGAT
GTATCTCGGCTCTCTCGGCATGATCGTCAACCCGGTGAGTGACGGAGTGA
ACGAGGGGATCCAGACGAAGTCTACGAGATCTACGAGATCTACGAGAATG
GTCTGGAAGACGACGAACCAACGACAGTTGTTATTGTCGACGGAGGGAGC
AACGGACAGGAAGGCGGCGGGAATAAGATAGGGGAGGGAGGTGAAGCTGA
ACCCGCCTTCGTGTTTTGGCACATGCGTGCGGCATTTGGCAAGTATTTTT
GTTTTCCTTGCGGCTGCTCTGGCTGTTTGGTACGATCGCACCGGAAACGT
TGTGCCTGTTTTTCCGTCGTTGTGTAGAGAGAACAAAACAGCAGTACCAG
TGAAGCAGGCTTGTCTCCGGCGCACGGCCGGCTGGTGTGGTTGGCGGGTT
CGATGTTGTTCTTGGACTCAGCAGGCAGGCCGAAACAACGCGGGCGCACA
TCGGACAGTCCGACATGCCCACGTTTGTGTCAACTTGGTCTCTTGAGTTC
AAGACCAACAGCTAGCCCGCCACAACATACCAGCCAGCCGGCTGACCTAC
GCTGGACCCGCGTCTTGTTTCGGGTGCCCCCACTCTCAATGAATAAATTT
AGCGAACTGCCAGTCGAGTCCTTTCGAAGGACTCGACTAGCAGCACCGAT
CAAGGGGGGAGTTGAACATGAGGGACAGCGCTTAGCTGTCGGGGGGTCAT
GCGGGTAGCGGTTCATTTCGCGGCTGCGACTGCGCTTGTTGCGTACGTGC
CCCGCTTGTTGTTGTAACGTTATTACGAGGAAACATGCTGAGCACAGGGC
TGACGGCCGTTGTCTTGAGAGGGGTTTTTCCTTTTCATTCAGGACCCCCC
CCCGCCGCCCCCTGCCAACACGATCAGGCCTTCATGGTGTGGAACTTCGG
AGATGTGCTTGGGTGCGTGGTGATGCTGGTGTTAATAAAGCTCCTGATCG
TGGCGATGGTCATGAAGTCCTTCGGCTTTTCGTGGGAGGCCTCTACGCTC
GCGGGCGCGTGCATGGCTCAGGTACGACACTGCCAGCAAGGGATTTGCAA
AGCCTTCAGAGGATTCGGACTTGGGTGGGTGTGCGGTGAAATGGCGACAG
CAGGAGGGACGCAGTGCGTCTCGTTTTTTTTTTTTTCTCTCGGCCTGTGC
ACCTAGCCTTCTTGCGGCGCCGTACATCGTGCCACACCTAATACTTCGAA
GTAGGTGTTTTGCAGGGCGGCAGAGATGGATGGCAGCGGATGCAGCCTGT
GTGAGTCAAGCGGTTCGGAGCCTACGCTCTGCCTGTGCTCGAGCAACTGT
TGGCTGACGTCTCGCCACGGGGACGTTGACGAAGAGAAGAATTGTCTCGA
CGCCTTGCAAGAGCTGTAGGCTTTGCGGACGTATGGCGGGCGTGTCTGTT
GCCAAGCTTGGTGCACGCACGCGTGGCCGCTCTTGTCCTCACCATCATTT
TGGAATCAGACATACATCCCATCACACGAGAGGCTGTGAACCTGTGCGAA
CACCACAGCAGTAGTCGAAGGGATTGGGTTGAATTGAAGTCTTTACACAG
CGATACCGCCTTTTTATTCAATCCTTGCGCGACTGCAGGTCTCCGAGATC
TCGCTCTTCTTCGTGGCGAGGGCCCAGCACCTCAAGCTCATCAGCCGGCA
TCACTACCTCATGACCGTGGCGACGACGGTCATCCTCATGGTGGCGTCCC
CGCTCGTGATCAAGGGCCTTCAGGCCGTCCATGGAGGCGCTGCCTGCGGG
GAGGGCGGTGCCACCTGCAGCAGCCCCCGCAACGGGACCGGCACCGGCGG
CGGCGGCGGCGGCGGTCGTGGGGTTGGGGAAAGCGGCGGGGCGGAAGACT
CGATCCTCCCGTTGATTGGCGGGCGCGGGAGGGGTCGGAGCCGCGGACAT
GGGGAGACGCCGACGTGGAAGGAGAGGTGCAAGGGAAGTTGAGAGTGTTC
CGTCGAAGGGGAGGCCGTGCGCTGGACGGAGTTTTGTGTTTGCTTGGTTT
TACTTCTCAAGACGGAGATGGTGCGGTCGCGAGGCTGAGGAGGCAGGCGC
GGGACCTATGTGGTGATATGCCAGAGGGGCGGTGGGAACATGTCTCCGTT
TGTTGGCGTGTGTGCTTTGGAGAAGTTAGCTTCCCTTTATGGTTTCTGAG
ATCGCGAGTTGGTGTTTTGTGTCGCGTGTTGTGCCGACGAGCTGTGCCGA
CGAGCTGTGCCGACGAGCATCATCGCTGATTTTCAGGAGCGACGGGAAGA
CAGGGTCAGTCTACCAGCCGTGTTTGTCGTTGTACCCTTGACCTTTTTCG
GCAAGGTTCGGCGAGGTGTGACTATAGGCGAGGGAATACTCGGTCTCATT
GCGGCAGTCGATCGGTTCTCAGGTGCGGGCTTGATGTCCATGCGTGCGGT
GGAATGTCGTTACCTCTGCCGCTCCGTGAGTTTTTTTCTCCATAGAACAA
TGTAACCTGCCAGTATAGTTTTTTTTTTTCTCTCCCATCGCTCCTCCGCG
GTTGGCTTTGGGCTGGCCTCGTGAACCTATCCCCCACGACATTGCTTCAT
TAGACGAAGATCCAGGGCCCTTGTAAGACGTAGATCCGAGCTTGTTTGTG
TACGTGTCAGAAGGACAAGTGCCCACCGCTGCTGTAGAAGCCGTGCTGGT
AGTGGGGGGCATCTCGAAGTGTCCGGATCTGGCGGTTGTTGCATCCTGTT
GGTGTCCTGAGCTTAAGAGTTGCCGTCTCAGCCGATGTTTTCAATTGTTC
CCAGGATGCTCGGTGAGCAAGCCGAGACAGAAGCGGTCCTTCGACTGTTG
TGGTTCTGTAGGTGGGGAGCTGTCGTTGGTTATTTGTACAGCATTTGAAG
CACATTGAGGTATTTTATTATCGTTCCCCGTATTAGGTAGCTGTCAGAGT
AGATAGTTGCGCCGTTGTGGGATCTCTCCGCCTTATCAGGGCGCGAGATC
TCGATGGAACGTTCTTCAGATACTCACTAAAGGCCCGCCTTGTCTAGTAA
GAAGTAGTTGGCGTGCCTCTTCAAATCCTCTATGCGTGAGTCTAGTCTTC
CCGGATGATGATGTTGCGGGGATAAATAAATCTTCACGAAAGAAAAGTCG
GTCGCCGGAAATTATGGCACCGGGCGAGGCTTGTGTTTGTTCCGGCACTT
TCTGTTTCGTGAAAGTCACTATCGTTTGTTCTATTTCATTCGTAATATTC
TGTTTTTCTTTTTGCGCACTGCATGTCCTAGTTTTTTCTGTTTCATTCGT
ATCATTATGC
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Coding sequence (CDS) from alignment at Scaffold_330:859576..864685-

>EsuBft956_8a-0001 ID=EsuBft956_8a-0001|Name=EsuBft956_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=867bp|location=Sequence derived from alignment at Scaffold_330:859576..864685- (Ectocarpus subulatus male Bft15b)
ATGTACGCCGTGGAGGAGTCTCAGGGCACGACGGGGTCGTTTGTGCCTCG
AATCGCCGGGTGCGCGATACTGCTGCTGGCCTTCGTGATCGCCTCGAGGA
GGGTGCTGCCGATGGCCATGGCCCGGCTGGTGCTCAAGGACAAGCAGGAG
CAATCGTCCGGTCTCTTCACCCTGGCGGTGGTGAGCTACTGCCTCGGTGT
CGCTCTTGTCTGCGAGCGCCTCGACCTGAGTCACGAGGCCGGAGCTCTCT
TTGCCGGGCTGCTGATGGTCGACTCCCCCTTCGCCCAGAAGGCCCACGCG
AGAATGCAGCCGTTGACGAGCCTCTTCGGAGGGATGTATCTCGGCTCTCT
CGGCATGATCGTCAACCCGGCCTTCATGGTGTGGAACTTCGGAGATGTGC
TTGGGTGCGTGGTGATGCTGGTGTTAATAAAGCTCCTGATCGTGGCGATG
GTCATGAAGTCCTTCGGCTTTTCGTGGGAGGCCTCTACGCTCGCGGGCGC
GTGCATGGCTCAGGTCTCCGAGATCTCGCTCTTCTTCGTGGCGAGGGCCC
AGCACCTCAAGCTCATCAGCCGGCATCACTACCTCATGACCGTGGCGACG
ACGGTCATCCTCATGGTGGCGTCCCCGCTCGTGATCAAGGGCCTTCAGGC
CGTCCATGGAGGCGCTGCCTGCGGGGAGGGCGGTGCCACCTGCAGCAGCC
CCCGCAACGGGACCGGCACCGGCGGCGGCGGCGGCGGCGGTCGTGGGGTT
GGGGAAAGCGGCGGGGCGGAAGACTCGATCCTCCCGTTGATTGGCGGGCG
CGGGAGGGGTCGGAGCCGCGGACATGGGGAGACGCCGACGTGGAAGGAGA
GGTGCAAGGGAAGTTGA
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