EsuBft954_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft954_8a-0001
Unique NameEsuBft954_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:222521..223513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNR4
ProteomeIdEsuBft954_8
Protein domainsIPR008922
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length37
Hectar predicted targeting categoryother localisation
Evalue1.69e-59
EggNOG OGs2CZRH@1|root,2SBDH@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionCommon central domain of tyrosinase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft954_8aEsuBft954_8aEctocarpus subulatus male Bft15bgeneScaffold_235 222521..223513 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_8a-0001-exonEsuBft954_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 222521..222573 -
EsuBft954_8a-0001-exonagat-exon-47330Ectocarpus subulatus male Bft15bexonScaffold_235 223031..223304 -
EsuBft954_8a-0001-exonagat-exon-47329Ectocarpus subulatus male Bft15bexonScaffold_235 223464..223513 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_8a-0001-exonagat-three_prime_utr-23449Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 222521..222546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_8a-0001-cdsEsuBft954_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 222547..222573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_8a-0001EsuBft954_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 222547..223513 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft954_8a-0001 ID=EsuBft954_8a-0001|Name=EsuBft954_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=377bp|location=Sequence derived from alignment at Scaffold_235:222521..223513- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGAGTCCCCCCCTGCTTTTACTGTGGTCCGGATTCGACGAGCAC
GTTGTGGCACCTCAAGCGCTTGGGTTCGAAGGATTTCAACGAGACGTGGG
AATCGCTCCACGCTTGTGTGGGTCACAACCCGGCTGACCTCCAGCCGTTC
CATGGGATGTTCCCGGACTGGGATGACAAGCACGCGGAGGAGGAGCTGGA
GGACAGCGCAGCCTCGCCGTTGGCCAAGAGATACTATACCAACATGGAGC
TCTACGGCCTTCTTAGGCCAGACCAGTCGGACCTGCCGTACGTTTACGAC
AACTTCGCGTGGCCCCACTGTTCGGTGTTGGGAGAAGACATGGTAGCGTG
AAGAGACCTTGGGTTGGTACAAGCCGG
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protein sequence of EsuBft954_8a-0001

>EsuBft954_8 ID=EsuBft954_8|Name=EsuBft954_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=116bp
MMGVPPCFYCGPDSTSTLWHLKRLGSKDFNETWESLHACVGHNPADLQPF
HGMFPDWDDKHAEEELEDSAASPLAKRYYTNMELYGLLRPDQSDLPYVYD
NFAWPHCSVLGEDMVA
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mRNA from alignment at Scaffold_235:222521..223513-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft954_8a-0001 ID=EsuBft954_8a-0001|Name=EsuBft954_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=993bp|location=Sequence derived from alignment at Scaffold_235:222521..223513- (Ectocarpus subulatus male Bft15b)
ATGATGGGAGTCCCCCCCTGCTTTTACTGTGGTCCGGATTCGACGAGCAC
GTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCGCCCCTCCGACCTGTCGACCCCCCCGAAACCCCCCACGAACGCCTCGA
CGACGACAGGTTGTGGCACCTCAAGCGCTTGGGTTCGAAGGATTTCAACG
AGACGTGGGAATCGCTCCACGCTTGTGTGGGTCACAACCCGGCTGACCTC
CAGCCGTTCCATGGGATGTTCCCGGACTGGGATGACAAGCACGCGGAGGA
GGAGCTGGAGGACAGCGCAGCCTCGCCGTTGGCCAAGAGATACTATACCA
ACATGGAGCTCTACGGCCTTCTTAGGCCAGACCAGTCGGACCTGCCGTAC
GTTTACGACAACTTCGCGTGGCCCCACTGTTCGGTAAGTGCTATGCTTGT
CTTGTTTTGTTTTGTCTTGTTTCCTTGCGTTTTTTTTTTTTTTTTGTGCG
CGTGTTTGGTGAGTGTTTCGTGTGTGTGTGTGTTCGTGTGTGTGTGATTG
CCTCTTTTTTTTTTGTGCTGTAGCCTTTGGTTTTTCGCAAAGGTGAGATA
CACGTGTTCACAGAGGCTGACGTGCGATGGCGCTTGGGCAGTTTTTATCT
CCTATTTTCTACTTTCACGCTTTTCATGTACTGTTTGCTCCACGTCTCGC
GCACTGTGAGGGTGTTTTCTTGTTGTTTGATCACCGATATCCTTCCTGCG
CCTCTTGCTGTTTGTTCGATAGCGACATACGTGACTCCAATCCAGTTTGA
ACTCAAATCAACGCCCACAGCTCGACACCTGCATTTCTTAATCTCGTGTC
GTTTTTGGCTCGTGCCGGTGCTCTCCTTGTCTCCTCCCAGGTGTTGGGAG
AAGACATGGTAGCGTGAAGAGACCTTGGGTTGGTACAAGCCGG
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Coding sequence (CDS) from alignment at Scaffold_235:222521..223513-

>EsuBft954_8a-0001 ID=EsuBft954_8a-0001|Name=EsuBft954_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=351bp|location=Sequence derived from alignment at Scaffold_235:222521..223513- (Ectocarpus subulatus male Bft15b)
ATGATGGGAGTCCCCCCCTGCTTTTACTGTGGTCCGGATTCGACGAGCAC
GTTGTGGCACCTCAAGCGCTTGGGTTCGAAGGATTTCAACGAGACGTGGG
AATCGCTCCACGCTTGTGTGGGTCACAACCCGGCTGACCTCCAGCCGTTC
CATGGGATGTTCCCGGACTGGGATGACAAGCACGCGGAGGAGGAGCTGGA
GGACAGCGCAGCCTCGCCGTTGGCCAAGAGATACTATACCAACATGGAGC
TCTACGGCCTTCTTAGGCCAGACCAGTCGGACCTGCCGTACGTTTACGAC
AACTTCGCGTGGCCCCACTGTTCGGTGTTGGGAGAAGACATGGTAGCGTG
A
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