EsuBft954_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft954_2a-0001
Unique NameEsuBft954_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:249235..251602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft954_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length103
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004560.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft954_2aEsuBft954_2aEctocarpus subulatus male Bft15bgeneScaffold_235 249235..251602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_2a-0001EsuBft954_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 249235..251602 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_2a-0001-exonagat-exon-47309Ectocarpus subulatus male Bft15bexonScaffold_235 249235..249250 -
EsuBft954_2a-0001-exonEsuBft954_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 249348..249526 -
EsuBft954_2a-0001-exonagat-exon-47312Ectocarpus subulatus male Bft15bexonScaffold_235 250117..250270 -
EsuBft954_2a-0001-exonagat-exon-47308Ectocarpus subulatus male Bft15bexonScaffold_235 250554..250869 -
EsuBft954_2a-0001-exonagat-exon-47310Ectocarpus subulatus male Bft15bexonScaffold_235 251184..251393 -
EsuBft954_2a-0001-exonagat-exon-47311Ectocarpus subulatus male Bft15bexonScaffold_235 251443..251602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_2a-0001-cdsEsuBft954_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 249235..249250 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft954_2a-0001 ID=EsuBft954_2a-0001|Name=EsuBft954_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1035bp|location=Sequence derived from alignment at Scaffold_235:249235..251602- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGATGAAGCAGGAAGCCGAGCGTGCAGCCGGGGAAGCGGCAGC
CCCGGCAGCCAAGATGGCGGATCTGCAGAGGAGAGTTGAGGAGGCAGAGG
AGAGGAGTTCAGCGGAGAAAGCCGCGAGAAGGAGAGTGGGTGATGCCGGG
TATGCGGCAGGGATGGAGCTGCCGGAGGGGCGGCTACTCTGGGCGGCGGG
GGGCACGGCAGCAACGGAAGCGGCAGCGTCTTCCCCGGTCGCCGCGTTGG
CGCCGGGCAGCGAGACACGCGCAGCGGCGACGGTGGAGGCGTCGGCGGCG
GGGGGCACGGCAGCAGCGGCAGCGGCAGCCTCGTCCCCGGTCGCCGCGTT
GGCGCCGGGCCNGCAAAACGAAGCGGCGTCGTCCCCGGTCGCCGCGTTGG
CGCCGGGTCTTCAGACGAACGTGGCGGCGATGGAGGCGGCGCCGGCGGCG
GAGGGTACGGCAGCAGCGGGTGCATCAGCGTCGTCCCCGGTCGCCGCGTT
GGCGCCGGGCCTTCCGATGGACGCAGCGGCGATGGAGCGGGCGCCGGCGG
CGGTAGGTACGACGGCAGCAGGAACAGCGACGTCGTCCCCGGTCGTCGCG
TTGGCGCCGGGCCCTCGGACGGACGCAGCGGCGACGAGGGCGGCACCGGC
GGAAGGGGGCACGGCAGCAGCGGGAGCATCAGCGAGGTACGTCGGCGTGC
TGAAGAAGTTCAGCTCTGTGGTGGAAGGGAGCGTGATCGAGGGACAGATG
GACCCTGCGGTGGTCGGGAAGTTCAAGATGACGCCGGTGGAGTCCTCCAT
GGCGTCGGACCTTAAAAAAGCCGCCGAGGCGAACGATTCGGCCAAGTACG
TCGCCCCCAAGTACTCAAAGGCGGCCATCGCGGGAGACTGGGTCCTGATG
TGGCAGGACACGGGAGCTGTGTTCCGCCTTCACCTCGGGGAGGACCTCCA
GTTTGAGAGCCTGAAGGGGCTGGGGAGTGGCCAGCTAGGAGGAAGGTGGA
ACCTCTGGGGAACTGAAAGGTTGGATAATTACTAG
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protein sequence of EsuBft954_2a-0001

>EsuBft954_2 ID=EsuBft954_2|Name=EsuBft954_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=344bp
MEKMKQEAERAAGEAAAPAAKMADLQRRVEEAEERSSAEKAARRRVGDAG
YAAGMELPEGRLLWAAGGTAATEAAASSPVAALAPGSETRAAATVEASAA
GGTAAAAAAASSPVAALAPGXQNEAASSPVAALAPGLQTNVAAMEAAPAA
EGTAAAGASASSPVAALAPGLPMDAAAMERAPAAVGTTAAGTATSSPVVA
LAPGPRTDAAATRAAPAEGGTAAAGASARYVGVLKKFSSVVEGSVIEGQM
DPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLM
WQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERLDNY
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mRNA from alignment at Scaffold_235:249235..251602-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft954_2a-0001 ID=EsuBft954_2a-0001|Name=EsuBft954_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2368bp|location=Sequence derived from alignment at Scaffold_235:249235..251602- (Ectocarpus subulatus male Bft15b)
ATGGAGAAGATGAAGCAGGAAGCCGAGCGTGCAGCCGGGGAAGCGGCAGC
CCCGGCAGCCAAGATGGCGGATCTGCAGAGGAGAGTTGAGGAGGCAGAGG
AGAGGAGTTCAGCGGAGAAAGCCGCGAGAAGGAGAGTGGGTGATGCCGGG
TATGCGGCAGGTAACACGAGGATAAGCGGCGCTGGCTATGCGCCTGGGTA
CCATAGCAGGGATGGAGCTGCCGGAGGGGCGGCTACTCTGGGCGGCGGGG
GGCACGGCAGCAACGGAAGCGGCAGCGTCTTCCCCGGTCGCCGCGTTGGC
GCCGGGCAGCGAGACACGCGCAGCGGCGACGGTGGAGGCGTCGGCGGCGG
GGGGCACGGCAGCAGCGGCAGCGGCAGCCTCGTCCCCGGTCGCCGCGTTG
GCGCCGGGCCNGCAAAACGGTACCCTGGTTGCCGAGTTCACGAAGTGACT
TGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGATG
GCAAACACCGGGGGGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACG
AAAACCCAACCCCGATGGCAAACACCGGGGGGGGCGGCTTGTTTTACAAC
GTCGTTGCCAAGCGACGAAAACCCAACCCCGATGGCAAACACCGGGGGGG
GCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGAT
GGCAAACACCGGGGGGAGCGGGGGGAACGGCAGAAGCGGCGTCGTCCCCG
GTCGCCGCGTTGGCGCCGGGTCTTCAGACGAACGTGGCGGCGATGGAGGC
GGCGCCGGCGGCGGAGGGTACGGCAGCAGCGGGTGCATCAGCGTCGTCCC
CGGTCGCCGCGTTGGCGCCGGGCCTTCCGATGGACGCAGCGGCGATGGAG
CGGGCGCCGGCGGCGGTAGGTACGACGGCAGCAGGAACAGCGACGTCGTC
CCCGGTCGTCGCGTTGGCGCCGGGCCCTCGGACGGACGCAGCGGCGACGA
GGGCGGCACCGGCGGAAGGGGGCACGGCAGCAGCGGGAGCATCAGCGAGG
TGTTGGTGTTTGCACACGCAACAACTCAAGACTCAAACTTTCGTGGCGGT
TGAATCTATGTGTTTCGTGGGAATTAGTCTGCATGCAGGTTGTGCCGCAA
CAACGTCCGCAACAAAACACTCCGCGTTCTTCGCGCCCGCTGCCCGGCTT
CTTCCACAACTATCAAGCCTATCGTTAATTTCCGCACACACGCACTCTGA
ACTTCCCCCTCGTATCTGGTCCAGCGCGTTCCTTACGCGTATTCTCGATT
TTTTCTCTTTCTTGTGGCCGGTTTCTGCGCAGGTACGTCGGCGTGCTGAA
GAAGTTCAGCTCTGTGGTGGAAGGGAGCGTGATCGAGGGACAGATGGACC
CTGCGGTGGTCGGGAAGTTCAAGATGACGCCGGTGGAGTCCTCCATGGCG
TCGGACCTTAAAAAAGCCGCCGAGGCGAACGATTCGGTCCGTGTTGCTGC
TGTTGTTGAAAGATGTTGTCGGCCCTTCAGCAACCCCTACCGTCTGGCCA
CCTTTACGTAAATCCAGTGACTTTTCCACTGCAGCAGTTGCGGGTATGAC
TCTGCCACTGCAACATTTACGGGTATGTGTCAGCTCTGTCGATGTTGAAG
GTCTAAACACGTTGGTATGACGATCACACCATCGAAACACACGGAGTTGT
CACAAGTCAGCAACTCCACATTGGAGTACAAAGATGAGCAGATGCCTGTT
TCAAGAAGGGTTGCCGTGGCCTTGCCACGGTGTTCGAAGTGTGGCGTTAA
ATGATCAATTCCTTCCGTATGACGGTGTTGACTCATGGTGTATGAGGTGG
CTACGAGTGTACAGGCCTTGCTTGTTATTATCGTGCTTCGAATCGGCCTG
CAGAGCGCAGCCGCTGTTCCCTCCAAGAACAAGCCGCCTGTTTACTCCGA
TGGGGCTTGGCTGAGTGGTCTACATCGTAGTTTTTGAGTCTTATGTATCG
AACACCGCCCACGAGCGTAATCGTAACCACTTGGCGGTCACCCGCATCAC
GTCGCACCTTCGGACGCGCGTCGCAGGCCAAGTACGTCGCCCCCAAGTAC
TCAAAGGCGGCCATCGCGGGAGACTGGGTCCTGATGTGGCAGGACACGGG
AGCTGTGTTCCGCCTTCACCTCGGGGAGGACCTCCAGTTTGAGAGCCTGA
AGGGGCTGGGGAGTGGCCAGCTAGGAGGAAGGTGGAACCTCTGGGGAACT
GAAAGGTATGCTGTTGCAGGTGCCTTCGCGTTGAATTTGTGCCACGGAGG
TCTGTACCCCACTCTTATCCAAGAAGTGAGACGCGTGCTTACGTGAGCGC
AGGTTGGATAATTACTAG
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Coding sequence (CDS) from alignment at Scaffold_235:249235..251602-

>EsuBft954_2a-0001 ID=EsuBft954_2a-0001|Name=EsuBft954_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1035bp|location=Sequence derived from alignment at Scaffold_235:249235..251602- (Ectocarpus subulatus male Bft15b)
ATGGAGAAGATGAAGCAGGAAGCCGAGCGTGCAGCCGGGGAAGCGGCAGC
CCCGGCAGCCAAGATGGCGGATCTGCAGAGGAGAGTTGAGGAGGCAGAGG
AGAGGAGTTCAGCGGAGAAAGCCGCGAGAAGGAGAGTGGGTGATGCCGGG
TATGCGGCAGGGATGGAGCTGCCGGAGGGGCGGCTACTCTGGGCGGCGGG
GGGCACGGCAGCAACGGAAGCGGCAGCGTCTTCCCCGGTCGCCGCGTTGG
CGCCGGGCAGCGAGACACGCGCAGCGGCGACGGTGGAGGCGTCGGCGGCG
GGGGGCACGGCAGCAGCGGCAGCGGCAGCCTCGTCCCCGGTCGCCGCGTT
GGCGCCGGGCCNGCAAAACGAAGCGGCGTCGTCCCCGGTCGCCGCGTTGG
CGCCGGGTCTTCAGACGAACGTGGCGGCGATGGAGGCGGCGCCGGCGGCG
GAGGGTACGGCAGCAGCGGGTGCATCAGCGTCGTCCCCGGTCGCCGCGTT
GGCGCCGGGCCTTCCGATGGACGCAGCGGCGATGGAGCGGGCGCCGGCGG
CGGTAGGTACGACGGCAGCAGGAACAGCGACGTCGTCCCCGGTCGTCGCG
TTGGCGCCGGGCCCTCGGACGGACGCAGCGGCGACGAGGGCGGCACCGGC
GGAAGGGGGCACGGCAGCAGCGGGAGCATCAGCGAGGTACGTCGGCGTGC
TGAAGAAGTTCAGCTCTGTGGTGGAAGGGAGCGTGATCGAGGGACAGATG
GACCCTGCGGTGGTCGGGAAGTTCAAGATGACGCCGGTGGAGTCCTCCAT
GGCGTCGGACCTTAAAAAAGCCGCCGAGGCGAACGATTCGGCCAAGTACG
TCGCCCCCAAGTACTCAAAGGCGGCCATCGCGGGAGACTGGGTCCTGATG
TGGCAGGACACGGGAGCTGTGTTCCGCCTTCACCTCGGGGAGGACCTCCA
GTTTGAGAGCCTGAAGGGGCTGGGGAGTGGCCAGCTAGGAGGAAGGTGGA
ACCTCTGGGGAACTGAAAGGTTGGATAATTACTAG
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