EsuBft954_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft954_13a-0001
Unique NameEsuBft954_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:166079..169882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft954_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length174
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft954_13aEsuBft954_13aEctocarpus subulatus male Bft15bgeneScaffold_235 166079..169882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_13a-0001EsuBft954_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 169498..169863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_13a-0001-exonEsuBft954_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 166079..167268 -
EsuBft954_13a-0001-exonagat-exon-47353Ectocarpus subulatus male Bft15bexonScaffold_235 169329..169882 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_13a-0001-exonagat-three_prime_utr-23443Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 166079..167268 -
EsuBft954_13a-0001-exonagat-three_prime_utr-23444Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 169329..169497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_13a-0001-cdsEsuBft954_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 169498..169863 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_13a-0001-exonagat-five_prime_utr-15260Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_235 169864..169882 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft954_13a-0001 ID=EsuBft954_13a-0001|Name=EsuBft954_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1744bp|location=Sequence derived from alignment at Scaffold_235:166079..169882- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGCATCAACGGCTTCTCCATGTCCGGGAGCATTGCGCTACGGATGTTCG
GGACTGTGGGTGGTGGAGGTTCTTCTGGATCGAGTGGGGGTAAGCGACGG
CGGGGGGACTCCCGCTCCGCGGGTGGGGACTCCAAACGCCGGTCGAAAGT
GTGTTTCGAATATCGCGACTCCCAAACATCCAGGTGGGGCGACTCCAGCG
TGTTCCGCCGTGCGACTGGGGGCGGCAAGGGTGGCGGCGGCGGCGGCGGC
GATGGCGACCAGGGTGGCCGTAAGGGCGGCGGTGGGGGCCGCGCTTCGGG
TGGAGGGGGAGCCTCGGGCGCCGCGGCCGATGGCGGAAGCGGCTCGTCGG
CGCTGGTCGTTCGCCGGGGAGATGGCAGCAACTGAGGACACGGGCTCTGC
CTTTCGGCGGGGCCAACTCCACAGTCGTGTGGGAGCGTAGATCAGACAGC
GAGGCCGGGTTCCAGAGCGCTTGGGGCCGCCGCGTTGGCGGCGGCGGGCG
TGGGCGTCGATCGAGGGGCGTGTGTGCCCGGGGCTGTCTCTTCGTTGCTA
CCAGGAAGTGGAGTTGAATCGAGCCGGGCAAGAGATGTGCTCTGCCGTAC
TGGGGCCAGTCTCGTCCGCCAGTCACTTGCGCGAACGTCTGAACGAACTT
ACCTGGGCCTTTTTGGAGCCTGGGTGAAATATCGTGTGATCGTGGTGAAC
CGGCCGGTTTTTATTGCGGCCGAGGTTGTTACGCGTGATGTCGTTGCTCA
ATTGCTTGAGTACGTCGCGTATTGTTTTTCCGTTTTGGGTCTACAACAAT
CGACGATCGCCAGTCATTTGTCCGCTATTAAGTTCTTCCATCGTGTGTCG
GGTGAAGGGGAGCTTGATACGCAGCATCCGCTGGTGCGTTGTGCTTTACG
TGGGGCGGCGCGGGGGCATGCCGACGTGGGCACACAGCAGCGGTTGCGAC
GGCCTGTGTCTTGGGCGATGTTGCAACGGGGGAGTTCGCTGGTATCGCAG
TGGGGGGTAGGCGGGCGCGTTTTGTTTCTTGCGCTGAGTGCTTCTATCTT
CTTCCTGACGCGAGCATCCGAGATGTTTGCGGTGTCGAAATTGTCTATGC
ATGAGGTTCATGGATTGCGTCGGGGGGACGTAGCGTTTTTTCGGGGGTCG
GTCCAGCTGTTGCAGTCGGCGCAGTGGCCATTGGCCGATCGCGTGGAGGT
ACGTTTTCGTTCGTCGAAAGGGGACCAGTTTCGGAAGGGGGCGGTTTGCA
CGCGCACACGGCAAGGTCCGTGCTGTGGGGTTGACCGAGGGGGTGGTGCA
GTGGATGTCATGGTGGAGCTGCTTTCTCTGTATACCTTTTTGCCTTCGCA
TGCGCCTCTCGTGGCTTTCGGTGTTGGTCAGGGCCAGTGGGCCATGTGGA
CTAAGTGTCAAGCTACTGTGGCTCTTCGCCAAGTGGTTGCGTTGGCGGGT
TTGCAGCCCGAGGAGTACGCGCTGCACTCCCTGAGAATTGGGGGCGCAAC
TTTCTTGGCGGCGGGGGGTGCCTCGCCGGAGGTTCTCCGAAGAGAAGGGC
GTTGGTCGGGGGAGAGTAGTTACCAGTGTTACGTTCGGAATGTTGGGGGT
GAGGCTTCGTGGGTGTCAGAGGTGTTGGCGAACAAGGAGAAGGTGACTTC
ACAGCCAGGGCAGGGTACCCGATGGGGTGACGTGTGAAGGAGTTCCGTGG
CACGTTGTGTATGTCGAGATCCTTGTTGTACCGATGGTATTTTG
back to top

protein sequence of EsuBft954_13a-0001

>EsuBft954_13 ID=EsuBft954_13|Name=EsuBft954_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=121bp
MSGSIALRMFGTVGGGGSSGSSGGKRRRGDSRSAGGDSKRRSKVCFEYRD
SQTSRWGDSSVFRRATGGGKGGGGGGGDGDQGGRKGGGGGRASGGGGASG
AAADGGSGSSALVVRRGDGSN
back to top

mRNA from alignment at Scaffold_235:166079..169882-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft954_13a-0001 ID=EsuBft954_13a-0001|Name=EsuBft954_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3804bp|location=Sequence derived from alignment at Scaffold_235:166079..169882- (Ectocarpus subulatus male Bft15b)
CGGCATCAACGGCTTCTCCATGTCCGGGAGCATTGCGCTACGGATGTTCG
GGACTGTGGGTGGTGGAGGTTCTTCTGGATCGAGTGGGGGTAAGCGACGG
CGGGGGGACTCCCGCTCCGCGGGTGGGGACTCCAAACGCCGGTCGAAAGT
GTGTTTCGAATATCGCGACTCCCAAACATCCAGGTGGGGCGACTCCAGCG
TGTTCCGCCGTGCGACTGGGGGCGGCAAGGGTGGCGGCGGCGGCGGCGGC
GATGGCGACCAGGGTGGCCGTAAGGGCGGCGGTGGGGGCCGCGCTTCGGG
TGGAGGGGGAGCCTCGGGCGCCGCGGCCGATGGCGGAAGCGGCTCGTCGG
CGCTGGTCGTTCGCCGGGGAGATGGCAGCAACTGAGGACACGGGCTCTGC
CTTTCGGCGGGGCCAACTCCACAGTCGTGTGGGAGCGTAGATCAGACAGC
GAGGCCGGGTTCCAGAGCGCTTGGGGCCGCCGCGTTGGCGGCGGCGGGCG
TGGGCGTCGATCGAGGGGCGTGTGTGCCCGGGGCTGTCTCTTCGTTGCTA
CCAGGTGATGTCTCGTTTAGGTCGATTGCGGGTTCGCGTGAACTTTGCGT
ATGGCGATCTCGTGTGTCTGCTTTGGCAGCGGTGTGTTCACCCTCCGATA
TGGGTGTGGGTCTTAGTGAGGTGGCTTCCGCTGGTTCCGCCTTGCTTAGA
CAGTGTGGGGGGCGTATTGAAGTGCTCGTGGCGGCCGGTGGTGCCGGCTG
CTTTGCGCCCCATGTCAGTGTTGCGTCGGTTCGTGATTTTTTTTGGGTCT
CGAAACGTTTTCCGCAAATTGACAACCTCCTCCGCGTGTTGTGTCCTGGC
GCGCCGGTCGATGTCGCGCCGGGGGGGTGTCTAGACGCCGAATTACAATA
CGGCAACCATTCCAGCATTCTACCATACACTCCGCAGATCATTGACAAGA
TCGTTTCGGATGTTACGTTAGGTCGTGCTCTCGTCGTCGACGTGCAGTTC
ATCCGTGAAATTTCGGGTGTGCGTGTTTCCCCCCTTAAGGTGATGGACGA
TCCGAAATTCCGCATCATTCATGATCTCACATTCACAGCGGCTGGTGCGC
AGTCTAGCGTCAATGCAGATACAGATTTTGATCGTGCCCCCGAGTGTCTG
TTGGGACATGTACTTTTCGATGTCTTGTCGCGCGTCCTCTTTTTGCGCCA
ATTGCACGGGCCGACTCTCGAGATTTTGCTCTGCCGTATTGACGTGCGTG
AGGCTTTTCGCCAAGTGTTGGTCGACCCTTCGAGGGCGTCGGTACTCGGA
TACACGATGGGGGACGTGGTCGTCATCGGCCTTCGTTGCCAGTTTGGTTG
GCGTTCCAGCCCAGGTTTTTGGTCGCTGTTTGGTTCCGCTCTTGAGCATG
CACACACCCACACTACTTTTCAGACAGCTTCTGTGTTGCCTGCCGGAGTT
GCGGCGGTTGATCATGTTCAGCTTGTTCCTCCCCAAAACCTCCCCGTATC
GTTACCGCGTGATTGTGCCCAAATTTCTATGGAGGGCGGTTTCGCTGGTT
CCGCGTTTTTCGTTCGGTATTATGTGGATGACGGTGTGCTTGTCGAGGCG
CGGTTTTTCACGGATGGTCGTCGTTGCCTACGTGCAGTGCAGTCGATCGC
GTCGGACCATTTCCGTCTGCTGGGACACCGGGGGCCAAACGATCCTCCGT
TGTTGTCTGCAAAGAAAATCACCGATTTTTCGACGCGTTTGGAGGTGTTG
GGATGGATTTTAGACACGCAAACTCTCACAGTGACCATGCCTCTGCGAAA
ACAACAGAAATTAAACCGTTTGTTGGGCGAGTGGCCGCGGTCGCGTCGGT
GTGCGACTGCCCGTCACGTCGCGGAATTGACCGGTTTTCTTCTTCACGTG
TCTTTTGCCTTGCGTCCAGGCAAATTTTTCGTCGGCTGTCTGTTGGCTGA
CGTCGGCATGCCGCAGTCCGAGGTGTTCCCTTCGCGTGTTTCTAACCCCA
ATCGGCGTGTCGTGTTGGGGCCCATGTTTCACGATGATTTGGATTTTTGG
CGCTGGTTTGCGCAGCGAGGTCTGGCGTCGCGTGGCGGCCAGTTGTGTGC
ACCGATGTACAATGTGGTGCTTCGTCCTCCGGTAATGGCTGTGTTTGCCG
ATGCTTCCAAAACGGCGTTTGGAGCATACTTTGTGCAAACTGGGTGTTAT
TTCCGGCGTGATCTGACGTGTGACGAGCAGTCCCGCTTTGTGGGGTCTAG
CAAGTCTGTATCCGAGTGTGCCGATGTCAGTATCAATGTTCTTGAGCTAC
TCGGCATGGTCGCGGCGGCATGGGTGTTGATTGTGCAACAGCGTCATGTG
CCGGTGTCGGCTGGTGACTGTATCCAGTTGCGGGGAGACAATGAAGCGAG
TGTGGCATGGATTGAGCGGTGTCGCGGAGGCAAGGAGCCGCGGTCAGGCG
CGCTCATGCGGATGCTGGGGGCGATTGAAGTGTCTAGCGGGGGGCTTTTC
CAATTGCCCCATGTGCCTGGTGTGCTCAATTCGCTTGCTGATGGTATTTC
TCGCTGGCCCGCCGCTGATGTGTACGACAACCTTTGTGCCGCTGCCCCCC
ATGTACGATGGCAGGAAGTGGAGTTGAATCGAGCCGGGCAAGAGATGTGC
TCTGCCGTACTGGGGCCAGTCTCGTCCGCCAGTCACTTGCGCGAACGTCT
GAACGAACTTACCTGGGCCTTTTTGGAGCCTGGGTGAAATATCGTGTGAT
CGTGGTGAACCGGCCGGTTTTTATTGCGGCCGAGGTTGTTACGCGTGATG
TCGTTGCTCAATTGCTTGAGTACGTCGCGTATTGTTTTTCCGTTTTGGGT
CTACAACAATCGACGATCGCCAGTCATTTGTCCGCTATTAAGTTCTTCCA
TCGTGTGTCGGGTGAAGGGGAGCTTGATACGCAGCATCCGCTGGTGCGTT
GTGCTTTACGTGGGGCGGCGCGGGGGCATGCCGACGTGGGCACACAGCAG
CGGTTGCGACGGCCTGTGTCTTGGGCGATGTTGCAACGGGGGAGTTCGCT
GGTATCGCAGTGGGGGGTAGGCGGGCGCGTTTTGTTTCTTGCGCTGAGTG
CTTCTATCTTCTTCCTGACGCGAGCATCCGAGATGTTTGCGGTGTCGAAA
TTGTCTATGCATGAGGTTCATGGATTGCGTCGGGGGGACGTAGCGTTTTT
TCGGGGGTCGGTCCAGCTGTTGCAGTCGGCGCAGTGGCCATTGGCCGATC
GCGTGGAGGTACGTTTTCGTTCGTCGAAAGGGGACCAGTTTCGGAAGGGG
GCGGTTTGCACGCGCACACGGCAAGGTCCGTGCTGTGGGGTTGACCGAGG
GGGTGGTGCAGTGGATGTCATGGTGGAGCTGCTTTCTCTGTATACCTTTT
TGCCTTCGCATGCGCCTCTCGTGGCTTTCGGTGTTGGTCAGGGCCAGTGG
GCCATGTGGACTAAGTGTCAAGCTACTGTGGCTCTTCGCCAAGTGGTTGC
GTTGGCGGGTTTGCAGCCCGAGGAGTACGCGCTGCACTCCCTGAGAATTG
GGGGCGCAACTTTCTTGGCGGCGGGGGGTGCCTCGCCGGAGGTTCTCCGA
AGAGAAGGGCGTTGGTCGGGGGAGAGTAGTTACCAGTGTTACGTTCGGAA
TGTTGGGGGTGAGGCTTCGTGGGTGTCAGAGGTGTTGGCGAACAAGGAGA
AGGTGACTTCACAGCCAGGGCAGGGTACCCGATGGGGTGACGTGTGAAGG
AGTTCCGTGGCACGTTGTGTATGTCGAGATCCTTGTTGTACCGATGGTAT
TTTG
back to top

Coding sequence (CDS) from alignment at Scaffold_235:166079..169882-

>EsuBft954_13a-0001 ID=EsuBft954_13a-0001|Name=EsuBft954_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=366bp|location=Sequence derived from alignment at Scaffold_235:166079..169882- (Ectocarpus subulatus male Bft15b)
ATGTCCGGGAGCATTGCGCTACGGATGTTCGGGACTGTGGGTGGTGGAGG
TTCTTCTGGATCGAGTGGGGGTAAGCGACGGCGGGGGGACTCCCGCTCCG
CGGGTGGGGACTCCAAACGCCGGTCGAAAGTGTGTTTCGAATATCGCGAC
TCCCAAACATCCAGGTGGGGCGACTCCAGCGTGTTCCGCCGTGCGACTGG
GGGCGGCAAGGGTGGCGGCGGCGGCGGCGGCGATGGCGACCAGGGTGGCC
GTAAGGGCGGCGGTGGGGGCCGCGCTTCGGGTGGAGGGGGAGCCTCGGGC
GCCGCGGCCGATGGCGGAAGCGGCTCGTCGGCGCTGGTCGTTCGCCGGGG
AGATGGCAGCAACTGA
back to top