EsuBft947_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft947_7a-0001
Unique NameEsuBft947_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_424contigScaffold_424:674950..678787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft947_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length62
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft947_7aEsuBft947_7aEctocarpus subulatus male Bft15bgeneScaffold_424 674950..678787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_7a-0001EsuBft947_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_424 674950..678722 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_7a-0001-exonagat-exon-111144Ectocarpus subulatus male Bft15bexonScaffold_424 674950..675359 -
EsuBft947_7a-0001-exonagat-exon-111146Ectocarpus subulatus male Bft15bexonScaffold_424 676309..676389 -
EsuBft947_7a-0001-exonEsuBft947_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_424 676625..676675 -
EsuBft947_7a-0001-exonagat-exon-111145Ectocarpus subulatus male Bft15bexonScaffold_424 678707..678787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_7a-0001-cdsEsuBft947_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_424 674950..675359 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_7a-0001-exonagat-five_prime_utr-15197Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_424 678723..678787 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft947_7a-0001 ID=EsuBft947_7a-0001|Name=EsuBft947_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=623bp|location=Sequence derived from alignment at Scaffold_424:674950..678787- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCTGTGTGCGCAGCCGAGCGAGAACACCCCATTAGGAGCGTCTGGCGGA
TCGCGTGAAACAGCTATGGATAGCTCGGATGAATCAGACGGCGACTTTGT
CCCTGGGCAGGAGGAGTCTTCCAGGGGACGAGGGGGAGATAGCGATGGGG
GAGGCGGGAGTGATGACAGTGGAGGTGGCGGCGAGGACCGTATGGATGAC
GACGACTTCTCGGACGAAGGCAGCGACGACGATGACGAAGAGGGCAGCGT
TCCCGCACCAAGAGGAGAGAAATCATCCTCATCCTCCCAAGGAAAAGCCA
AAAAGAGGGACAAGGGCAAGAGCAGCAGCAGCAGCAAGAAGAAGAAGAAG
AAGAAGAAGAAGAGGAGGAGCGGGAGCAGGGGGGGCGACGAAGACGGGGG
CGGCAGCTCTAGCAAGAGGAAGAGGGGGGGCGGGGCGGCGGCTGCGAGCT
TGTTCGATGATGAGGCGGAAGAGAGCGACGGTGGCGGCGGGGGCGGCAGC
GATGACGACGACGAGGAGGCGAGTGTCTTCTCTCATTGGTGGAGGTTTGG
TTTTGTGGATGCGGTAGAGGTCCCTATTAAGTGCCGCTTGTTTATGGCCG
GTTGCCCTGTCAAAGGCCGGTGA
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protein sequence of EsuBft947_7a-0001

>EsuBft947_7 ID=EsuBft947_7|Name=EsuBft947_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=185bp
MDSSDESDGDFVPGQEESSRGRGGDSDGGGGSDDSGGGGEDRMDDDDFSD
EGSDDDDEEGSVPAPRGEKSSSSSQGKAKKRDKGKSSSSSKKKKKKKKKR
RSGSRGGDEDGGGSSSKRKRGGGAAAASLFDDEAEESDGGGGGGSDDDDE
EASVFSHWWRFGFVDAVEVPIKCRLFMAGCPVKGR
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mRNA from alignment at Scaffold_424:674950..678787-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft947_7a-0001 ID=EsuBft947_7a-0001|Name=EsuBft947_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3838bp|location=Sequence derived from alignment at Scaffold_424:674950..678787- (Ectocarpus subulatus male Bft15b)
GGCTGTGTGCGCAGCCGAGCGAGAACACCCCATTAGGAGCGTCTGGCGGA
TCGCGTGAAACAGCTATGGATAGCTCGGATGGTGAGTTGCTGTTTTTGCG
CTTGTTCCCTCCCTGCGTGACTGAGTCTATAGCCGATCTCCGTAGTCGTT
GCTTGGCTGCTTCTGGGTGTTGTCCTCTCCGCGAGGTCATCGTACACTGC
TGTAGTCGTTCGGTTGCTTGTTTGGGCACGAACGCTTGCTCTTAGAAGCA
ATGCCAGTGAAGCATGCCGAGGCCAGCTTCTATTCTTGGGGCCTGTTGGA
TGGTATCTGTAGGTCGCTCCAGGCATGCTGGGCTTGTTTATTGTTTACTC
CTGCCCCTGTATACACACATGGTGCGGAGCTTCCCGCCCACACCGCTGGG
TCGTCTATATAACAGAACTAGGCTGCCCCGTAACTCGCACAGGCTGGCTG
CCATCTTCCAATAGGGTTTGTATCGTTCTTGTTTTGGCCCCCCCCGCTAG
AGATAGGGTCTGGGTTGAGCTGTTGGTCGTGTTCCAGATCATAGCTAGCA
AAGAGTGTTGGCGTGTGCTGAACATTCAAGGCGGACTAAAAGGCCGGGGC
TCTGACCGTTCTGTAAATCCCGCTCTGCTTTACACGGGACACCTGTATCC
GCGAGACCAGAGCGTGCAATCGAACCTCCCCTCAAATCCGTACAGTAGCA
TGCCAATGGCTGCGTGGTTATTCTCGTGGGACGTCTGGTGTCACTTGTGA
TGTTCGCACCGTTGATTTCCCTCCAAAGCGCCGTCGAAATGGATTAGACT
GCTGTTGGAACATGTTGCGGTTGTGTCATGCCAGGCACCCTCAGAGTCGG
TTGGGCAGGCCGGGGATGGGCACCCCCCTGCCCCCGTTAGAAACAACAAC
ACCGGAAAGGCGACCGCTTGGAGAGAAGCCAATGGTTGCCGGGCTCTTAC
CTCGTTCGTTGTGGTCGAAACACCAATGCACCCTCCTTACCTAGCCTTTT
TGTCACGGAGCCGCGCGACCCCCAAGGAGGAGGCACGAGTCGCACTCAGG
GGTAGACCGCCGCCTCTAGTATGAGCAGCCGGGGAAGAACCACAGCTGCC
GTTGGAGCTGTTTTATTGAAGCAGTGCTTGAGGCTTTGTCTCTGCCGCTA
TCGTAGACAAGAGTGTCTGCAGCATATGTCGACGGATACGCCTACTGCTG
TACCGGGCAACGCCTTGGCCAATCAGATTGATCCGCTGCAAGCTGAGTCT
CAGACGCTTGGTGTGGCCCCATGTCTCCGACTTCACGTGTACGCACCAAC
CCCAGCAGTAAAGGCAGCTGCACCTATCCTAAGTCTCATCCTCGGCGATC
ACAACATTAACATTCAATATTCGATATTGACTGATCGATAAGATTCACGA
ATATATCCTGGTCACGACCGGCGGCTTTGCATTAGACAGCCGTGCAGACA
CAGCAGCATCAGCAGTAAATAGCACGATGAGCTACATTTATCTTTCAACA
CCAAGATGAGTGGCCTCCGATTAACGTACTCATACACGAGTTAGTCAGTG
TTTCAGCAGGTGTCAGATGTCCGCACGGCTGTCTAATGCAAAGCCGCCGG
TCGTGACTAGGATTTACTCGTCAATCTTATCTATCACTAAAGTTCCCATT
CAATACTGTAACCGCCTTTGGCCTGGATGGTGCAGGCTTCGCCTGATCAA
GCGACGATCCATACAACCGGTAGCGAGGGTGGAGACAGCAGCAACTGCTC
AATGTATCAAACCACTCATTCCGCAGAGGCGCACCGCAAGCTTTCGAGTA
CTTGGGTGGACTCAGCTGTCTGTCTCGTCTGGGGGAAAATATATTTCCTT
TGTTGCGAAAATGATGTCTAGATTGTAGCAATAACGCACGCCTGCTGCTA
CTTTGAAGAATACTGAGAATATTGTGAAGGTTGTGTTTCCCTCAAGCGTG
ACCTTGCCAAACAGTTGTTTACCTGGTCGTGTGCTTCCTAATATTGTTCT
GACCCCCTGCCCTCTTGCATACTGCTGCTGCTGCTGCTGCTGCTGCTACT
GCTACTGCTGCGGATCATGCCGGTACTATGCTGCTGCTATCCTTGCGCTT
GTGACACCGCAGAATCAGACGGCGACTTTGTCCCTGGGCAGGAGGAGTCT
TCCAGGGGACGAGGTAGGCATGATACGGGCATGCCTTTTGCTGTTGTTTC
TTGTGTGTTAGTGCTGCTGCTGCAGCTGCTGCAGCTGCTGCTGCTGCAGC
TACAGTTCGTGAGCTTGTTTATTTATCATCCATCAGGATGGTGCTTCAGG
ACAAATGGTCGCCGCGCAAGGATTCGTGTGTAAAGTGAGTTACCCTTTTC
CCCCTTTCCCGCTTGATCGACCGGCACCCAATACCTGCGCTTTTCCAGGG
GGAGATAGCGATGGGGGAGGCGGGAGTGATGACAGTGGAGGTGGCGGCGA
GGACCGTATGGATGACGACGACTTCTCGGGTGAGGCAGGCAGGCAACCTC
TCGATGAGGGTGTGTCGAGGGTGTAGGGGGGAGGGTCCTGGGTTGTGAGT
AGCCTTCGCCGATGCCTTCGCTGGGTTTTCCTCTTGAGTAAATATGTAGG
ATAAAGCATGCAATCGGGGGAAGCTGGGTTAAGGTTAGGGTTAGGGATAG
GGTCTGCGTACCCCCTCCCTCTTCTATGCCTTCATATACTTACGTGTCTC
GCGAAAGCGGTCTTGGGTTGTTCATTCGCTCGAGGCAGGACTGGTAAGAG
AGGGTGTGGTGGGTAGTCAGGACATGTTTTCAAGGTGAAGGCACACCTCG
TCAAAATGAGGAGAATTGTGCCTCGCCCGGTGAATGAGGACACAATGGGG
TGGTCTCGTGAAACGCCGGGGGTCTTGTTTGGTGGATGTAACCGCCGTTT
TGTTTGGTGGAAATAGGACGCATTGACTCAATCGCCTGTCTCTTCGCACA
CCAACGTTCCATAAAGACGGCACACGGGTACATGGTACAGTAAATGGATG
ATGCAGTCTTGGAACAGCCGCAAGTTTCTGACAGCATTCCAAGAGAAACA
GCTAGCTCTCAAAGTGATGCCGTTGTGGTGTTTATTTGTATCGGCGTCAT
CGAAGACATCGAAGACACGAAGGGAGGATGACACCCACTGTGTGGATATT
AAGATTGCATATTACTCGAGCTATCATGCATGGATCACTGTCGGGGCTTA
ATTGTTGGTTGACCGGCACATCCTCAGCGCTGTATGTTCCCCACTTTTTC
AGGCTTGTTGCTTCTTCACTATCGACAACATCAGCAGCATTACACAATGT
GCTTGCTTGAAGTTTGCATGATACCTTACAGCCTTCTTGCCCCACTACCA
CCCTCCCCCAAATTCCCTCCCCTAATCTTCGTGCTTGTAATTGTCTTCGT
GCCATGGTGTGGGGATCGACGGGCACAGACGAAGGCAGCGACGACGATGA
CGAAGAGGGCAGCGTTCCCGCACCAAGAGGAGAGAAATCATCCTCATCCT
CCCAAGGAAAAGCCAAAAAGAGGGACAAGGGCAAGAGCAGCAGCAGCAGC
AAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGCGGGAGCAGGGGGGG
CGACGAAGACGGGGGCGGCAGCTCTAGCAAGAGGAAGAGGGGGGGCGGGG
CGGCGGCTGCGAGCTTGTTCGATGATGAGGCGGAAGAGAGCGACGGTGGC
GGCGGGGGCGGCAGCGATGACGACGACGAGGAGGCGAGTGTCTTCTCTCA
TTGGTGGAGGTTTGGTTTTGTGGATGCGGTAGAGGTCCCTATTAAGTGCC
GCTTGTTTATGGCCGGTTGCCCTGTCAAAGGCCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_424:674950..678787-

>EsuBft947_7a-0001 ID=EsuBft947_7a-0001|Name=EsuBft947_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=558bp|location=Sequence derived from alignment at Scaffold_424:674950..678787- (Ectocarpus subulatus male Bft15b)
ATGGATAGCTCGGATGAATCAGACGGCGACTTTGTCCCTGGGCAGGAGGA
GTCTTCCAGGGGACGAGGGGGAGATAGCGATGGGGGAGGCGGGAGTGATG
ACAGTGGAGGTGGCGGCGAGGACCGTATGGATGACGACGACTTCTCGGAC
GAAGGCAGCGACGACGATGACGAAGAGGGCAGCGTTCCCGCACCAAGAGG
AGAGAAATCATCCTCATCCTCCCAAGGAAAAGCCAAAAAGAGGGACAAGG
GCAAGAGCAGCAGCAGCAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAGG
AGGAGCGGGAGCAGGGGGGGCGACGAAGACGGGGGCGGCAGCTCTAGCAA
GAGGAAGAGGGGGGGCGGGGCGGCGGCTGCGAGCTTGTTCGATGATGAGG
CGGAAGAGAGCGACGGTGGCGGCGGGGGCGGCAGCGATGACGACGACGAG
GAGGCGAGTGTCTTCTCTCATTGGTGGAGGTTTGGTTTTGTGGATGCGGT
AGAGGTCCCTATTAAGTGCCGCTTGTTTATGGCCGGTTGCCCTGTCAAAG
GCCGGTGA
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