EsuBft947_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft947_2a-0001
Unique NameEsuBft947_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_424contigScaffold_424:719221..719612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft947_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length39
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft947_2aEsuBft947_2aEctocarpus subulatus male Bft15bgeneScaffold_424 719221..719612 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_2a-0001-exonEsuBft947_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_424 719221..719612 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_2a-0001-exonagat-five_prime_utr-15196Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_424 719221..719462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_2a-0001-cdsEsuBft947_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_424 719463..719612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_2a-0001EsuBft947_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_424 719463..719612 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft947_2a-0001 ID=EsuBft947_2a-0001|Name=EsuBft947_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=392bp|location=Sequence derived from alignment at Scaffold_424:719221..719612+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACTACCCCGTACAGGTACCCTTTTAACACCCTCTCGTGCATCCTATCT
ATGCTTGCTTGTTGCGCAAGATGGATCGGGGCTCGTCCATTTATCTGTGT
TCTTTGGAAGTAAATAGCTCTGTGTCTAGTCGCAGTAATGCACCGGTTTA
TCACTAGTCATCATTGAGAAAAAGAGTACTATTTCATACCATACGCCTCC
GAAGCCTACTCTTTCGTGTTTCATCTCTGCGAGCTGCGAGCTATGGGCGA
GCTGGAAGCTGGAAGTTTTTTGTGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft947_2a-0001

>EsuBft947_2 ID=EsuBft947_2|Name=EsuBft947_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MGELEAGSFLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_424:719221..719612+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft947_2a-0001 ID=EsuBft947_2a-0001|Name=EsuBft947_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=392bp|location=Sequence derived from alignment at Scaffold_424:719221..719612+ (Ectocarpus subulatus male Bft15b)
GTACTACCCCGTACAGGTACCCTTTTAACACCCTCTCGTGCATCCTATCT
ATGCTTGCTTGTTGCGCAAGATGGATCGGGGCTCGTCCATTTATCTGTGT
TCTTTGGAAGTAAATAGCTCTGTGTCTAGTCGCAGTAATGCACCGGTTTA
TCACTAGTCATCATTGAGAAAAAGAGTACTATTTCATACCATACGCCTCC
GAAGCCTACTCTTTCGTGTTTCATCTCTGCGAGCTGCGAGCTATGGGCGA
GCTGGAAGCTGGAAGTTTTTTGTGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_424:719221..719612+

>EsuBft947_2a-0001 ID=EsuBft947_2a-0001|Name=EsuBft947_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_424:719221..719612+ (Ectocarpus subulatus male Bft15b)
ATGGGCGAGCTGGAAGCTGGAAGTTTTTTGTGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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