EsuBft946_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft946_11a-0001
Unique NameEsuBft946_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:206565..207963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft946_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length98
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft946_11aEsuBft946_11aEctocarpus subulatus male Bft15bgeneScaffold_390 206565..207963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_11a-0001EsuBft946_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 207022..207611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_11a-0001-exonEsuBft946_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 206565..207171 -
EsuBft946_11a-0001-exonagat-exon-28445Ectocarpus subulatus male Bft15bexonScaffold_390 207263..207279 -
EsuBft946_11a-0001-exonagat-exon-28446Ectocarpus subulatus male Bft15bexonScaffold_390 207608..207963 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_11a-0001-exonagat-three_prime_utr-23359Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 206565..207021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_11a-0001-cdsEsuBft946_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 207022..207171 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_11a-0001-exonagat-five_prime_utr-15191Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 207612..207963 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft946_11a-0001 ID=EsuBft946_11a-0001|Name=EsuBft946_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=980bp|location=Sequence derived from alignment at Scaffold_390:206565..207963- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGGGACAGGGAGGGGGTGATGCTACTGTAGCGAACGGTGGGACGGAC
GTGCACTTCAGTTTTTGGGCACGCATACGGTGCTGCAGGGATTTTTAGGT
GTACCTCTTCGGGCTCTTGGATACTATTTTCTCGTTATATGTGTGCGTGT
TCTTTAGACTAGCACTTACTTTCGTGACCACGGGCTGAGAGTCTTTTGCT
AGATTTTGGCATTTANGTGGGACAGGGAGGGGGTGATGCTACTGTAGCGA
ACGGTGGGACGGACGTGCACTTCAGTTTTTGGGCACGCATACGGTGCTGC
AGGGATTTTTAGGTGTACCTCTTCGGGCTCTTGGATACTATTTTCTCGTT
ATATGTCACAACTAAAGCGAAAGGTAGGAGGCGGAAGCGTCCGCGAAGCG
CCAGCGCGTGAGGGAAGCAGAAGCAGAGAGTACGGCCACCTCAGGACCGC
AGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCG
GGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAA
CTATGTACCCGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATG
CCATACTCCTTTATGTATTCTTTGTATTCCCTTCGGTCTCTGTGCTGTGT
TTCTTTTTTCCTTTTTTTTTCATGTCCTCCCTGCCTACTCTGCTGTGTTG
GGTACCTTGATCTCGCTTTTGCTGTAGCCTTTGTTTTTGTACGTCTGGCT
GTCTGCCCATCTGCCGCCTCTTTGTCCTATTTGCTCCGTTACTCCCATAC
CCTGGTGCGTAGTGCCTGGTGCTGGTACGTAACAATTTGATTTTTTCTTT
GGGCGGGTGTGGGAAGCGTCCTCCTTTCTTTTTGTTAAATTTTCTCTTAT
TTTGATCGGTTTCCGAGGGCGCTTTTCTCGAACGGTCGGTGCGATACCTG
TTCTTTCCTTTCTATCATTTTGTTTTCTTT
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protein sequence of EsuBft946_11a-0001

>EsuBft946_11 ID=EsuBft946_11|Name=EsuBft946_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MSQLKRKVGGGSVREAPAREGSRSREYGHLRTAEKESRGSGGGGEETATG
HCCRSE
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mRNA from alignment at Scaffold_390:206565..207963-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft946_11a-0001 ID=EsuBft946_11a-0001|Name=EsuBft946_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1399bp|location=Sequence derived from alignment at Scaffold_390:206565..207963- (Ectocarpus subulatus male Bft15b)
GTGTGGGACAGGGAGGGGGTGATGCTACTGTAGCGAACGGTGGGACGGAC
GTGCACTTCAGTTTTTGGGCACGCATACGGTGCTGCAGGGATTTTTAGGT
GTACCTCTTCGGGCTCTTGGATACTATTTTCTCGTTATATGTGTGCGTGT
TCTTTAGACTAGCACTTACTTTCGTGACCACGGGCTGAGAGTCTTTTGCT
AGATTTTGGCATTTANGTGGGACAGGGAGGGGGTGATGCTACTGTAGCGA
ACGGTGGGACGGACGTGCACTTCAGTTTTTGGGCACGCATACGGTGCTGC
AGGGATTTTTAGGTGTACCTCTTCGGGCTCTTGGATACTATTTTCTCGTT
ATATGTGTGCGTGTTCTTTAGACTAGCACTTACTTTCGTGACCACGGGCT
GAGAGTCTTTTGCTAGATTTTGGCATTTAGCAACTGACATACGGTTTAAT
GTAAAGGCAACAACAACAACAAATTTTGGGAAACATTTGAAGATTAATTT
CAGAGATTTGGTGACCATAATAAACATGGGTCTTGCAGATTCAAGAACAA
AACCAAAACAAGCTTGCAAGCACGCATTTATCCATTCGTAGCACATCGTT
CATATCTCCGACAAGTGCGTGCTTGCGATCGCAAGGTGGCTGGACTTGTC
AAGCGCTGTTACCGGTAGTGACTACGGGGAACAGCACAACTAAAGCGAAA
GGTATGAAGCCGGTCCCCCTTTGTTCACGTACTATCTTCCCTGCTAGCGT
GAAACGTACAACCACAGGTACATATATGAGGAAATGGCACAGGTAGGAGG
CGGAAGCGTCCGCGAAGCGCCAGCGCGTGAGGGAAGCAGAAGCAGAGAGT
ACGGCCACCTCAGGACCGCAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGG
GGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCG
AGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGCGCCCTG
TTTCCCTCCCTGCTGTATGCCATACTCCTTTATGTATTCTTTGTATTCCC
TTCGGTCTCTGTGCTGTGTTTCTTTTTTCCTTTTTTTTTCATGTCCTCCC
TGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTTGCTGTAGCCTT
TGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGTCCTATT
TGCTCCGTTACTCCCATACCCTGGTGCGTAGTGCCTGGTGCTGGTACGTA
ACAATTTGATTTTTTCTTTGGGCGGGTGTGGGAAGCGTCCTCCTTTCTTT
TTGTTAAATTTTCTCTTATTTTGATCGGTTTCCGAGGGCGCTTTTCTCGA
ACGGTCGGTGCGATACCTGTTCTTTCCTTTCTATCATTTTGTTTTCTTT
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Coding sequence (CDS) from alignment at Scaffold_390:206565..207963-

>EsuBft946_11a-0001 ID=EsuBft946_11a-0001|Name=EsuBft946_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_390:206565..207963- (Ectocarpus subulatus male Bft15b)
ATGTCACAACTAAAGCGAAAGGTAGGAGGCGGAAGCGTCCGCGAAGCGCC
AGCGCGTGAGGGAAGCAGAAGCAGAGAGTACGGCCACCTCAGGACCGCAG
AGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGG
CACTGCTGTAGAAGCGAGTAG
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