EsuBft945_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft945_8a-0001
Unique NameEsuBft945_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_526contigScaffold_526:71434..72204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft945_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length77
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft945_8aEsuBft945_8aEctocarpus subulatus male Bft15bgeneScaffold_526 71434..72204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_8a-0001-exonEsuBft945_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_526 71434..72204 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_8a-0001-exonagat-three_prime_utr-23358Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_526 71434..72013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_8a-0001-cdsEsuBft945_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_526 72014..72184 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_8a-0001-exonagat-five_prime_utr-15189Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_526 72185..72204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_8a-0001EsuBft945_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_526 72014..72184 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft945_8a-0001 ID=EsuBft945_8a-0001|Name=EsuBft945_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_526:71434..72204- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATCGTCTAGGAACGAGCGTGATGTGTTACTGGTTCCGTGCTGTGATGTAT
GTGTGCCTCTCTCCAGAGCAGAGGCCGCTCCCTCCCGCCGCGTCGCAACA
CAACAACAACCAACCGATGGACCCACAGAGACCCAATCAATATCTCTCCT
CTCGCTTCCTCCGCCGAAAGCTAGCAGCAGCAGTAGTATAGGGCACACCC
TGCTCCCGTCCCGCTCTCGCCGTGTGGTGTGTGCAACACACGCTGGTTGG
TGGGAATCCCTCTCTCTCCAGAGAACAAAAGGCGAAAACAAGGCCGGCTG
CGTTGAACAACAACAAACCACGGAAACAACAGCAACAACATCATCAGCGA
TGAATGAACCCCAGACCAACCAAACGTTCCCCGCTTCCTCCGCCGTCGCT
AACAGCAGTATGTGTGTGTGTCCCGCCTCCCTTGTCCATGTTTCCTGTCT
CTGTGTAGTGCGTGTCTTTCCAGTAGCAGCAGCAGTGTGTGCAGCACGGC
AGTGCGTCGTGGTTTCTTGCGTGCGTGTAGTTTGTTGCCCAAAAAAAAAA
CAAAAATGACGCCTCCCGGGGATGCGTCCATGTGACATACATATTTGCAC
AAGCGGTGTGCTATCTCGAGACACCGACCACGGATTGCGAAGGTAGCGGT
TGGGACAGCTCGGGCAAAATATTACTTGTGCGCAAGTTTTAGTTTGCAAT
TTGGTGCCTAGATGGTGAAATGGGCTCGAGTCTGCTGGCTATTTAGGGCG
CGCAGACAGACACCAGACAGA
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protein sequence of EsuBft945_8a-0001

>EsuBft945_8 ID=EsuBft945_8|Name=EsuBft945_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MCYWFRAVMYVCLSPEQRPLPPAASQHNNNQPMDPQRPNQYLSSRFLRRK
LAAAVV
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mRNA from alignment at Scaffold_526:71434..72204-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft945_8a-0001 ID=EsuBft945_8a-0001|Name=EsuBft945_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_526:71434..72204- (Ectocarpus subulatus male Bft15b)
ATCGTCTAGGAACGAGCGTGATGTGTTACTGGTTCCGTGCTGTGATGTAT
GTGTGCCTCTCTCCAGAGCAGAGGCCGCTCCCTCCCGCCGCGTCGCAACA
CAACAACAACCAACCGATGGACCCACAGAGACCCAATCAATATCTCTCCT
CTCGCTTCCTCCGCCGAAAGCTAGCAGCAGCAGTAGTATAGGGCACACCC
TGCTCCCGTCCCGCTCTCGCCGTGTGGTGTGTGCAACACACGCTGGTTGG
TGGGAATCCCTCTCTCTCCAGAGAACAAAAGGCGAAAACAAGGCCGGCTG
CGTTGAACAACAACAAACCACGGAAACAACAGCAACAACATCATCAGCGA
TGAATGAACCCCAGACCAACCAAACGTTCCCCGCTTCCTCCGCCGTCGCT
AACAGCAGTATGTGTGTGTGTCCCGCCTCCCTTGTCCATGTTTCCTGTCT
CTGTGTAGTGCGTGTCTTTCCAGTAGCAGCAGCAGTGTGTGCAGCACGGC
AGTGCGTCGTGGTTTCTTGCGTGCGTGTAGTTTGTTGCCCAAAAAAAAAA
CAAAAATGACGCCTCCCGGGGATGCGTCCATGTGACATACATATTTGCAC
AAGCGGTGTGCTATCTCGAGACACCGACCACGGATTGCGAAGGTAGCGGT
TGGGACAGCTCGGGCAAAATATTACTTGTGCGCAAGTTTTAGTTTGCAAT
TTGGTGCCTAGATGGTGAAATGGGCTCGAGTCTGCTGGCTATTTAGGGCG
CGCAGACAGACACCAGACAGA
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Coding sequence (CDS) from alignment at Scaffold_526:71434..72204-

>EsuBft945_8a-0001 ID=EsuBft945_8a-0001|Name=EsuBft945_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_526:71434..72204- (Ectocarpus subulatus male Bft15b)
ATGTGTTACTGGTTCCGTGCTGTGATGTATGTGTGCCTCTCTCCAGAGCA
GAGGCCGCTCCCTCCCGCCGCGTCGCAACACAACAACAACCAACCGATGG
ACCCACAGAGACCCAATCAATATCTCTCCTCTCGCTTCCTCCGCCGAAAG
CTAGCAGCAGCAGTAGTATAG
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