EsuBft943_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft943_5a-0001
Unique Name	EsuBft943_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_420	contig	Scaffold_420:533237..534285 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft943_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	104
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft943_5a	EsuBft943_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_420 533237..534285 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_5a-0001-exon	EsuBft943_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 533237..534285 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_5a-0001-exon	agat-three_prime_utr-23332	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_420 533237..533516 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_5a-0001-cds	EsuBft943_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_420 533517..534068 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_5a-0001-exon	agat-five_prime_utr-15178	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_420 534069..534285 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_5a-0001	EsuBft943_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_420 533517..534068 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_420:533237..534285-
coding sequence from alignment at Scaffold_420:533237..534285-

spliced messenger RNA

>EsuBft943_5a-0001 ID=EsuBft943_5a-0001|Name=EsuBft943_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1049bp|location=Sequence derived from alignment at Scaffold_420:533237..534285- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCAGCCGTGCTTATCCAGCAGCACTAGGCTTGAAACCAATCAACACTCT
AGAGCGAAGGTTATCCCCATACTATCCTAGTGAAGTGGACACATGCCGTC
TGCGTCTGGAGAGTTCGGCATTGGCGGTGCAGCCCCGACTCACAAGGAGG
TCCAGACCGCCATCGACCAGTCCACCGCAAAAATGGAGAGCATGATGACG
GAAAGTTAGGAACCGTCATGGAAGCCCTGTCTCGGTTAGTGCCCGAGACA
CCGCCCGCTGGAAGTACGACCGGAGCGGGCGGCGGGNATCCCCATACTAT
CCTAGTGAAGTGGACACATGCCGTCTGCGTCTGGAGAGTTCGGCATTGGC
GGTGCAGCCCCGACTCACAAGGAGGTCCAGACCGCCATCGACCAGTCCAC
CGCAAAAATGGAGAGCATGATGACGGAAAGTTAGGAACCGTCATGGAAGC
CCTGTCTCGGTTAGTGCCCGAGACACCGCCCGCTGGAAGTACGACCGGAG
CGGGCGGCGGGGGAGAGTCACGGGGGGGAAGGCACGCCCTTCCCGGCGCT
GGTCGTGTGGATCAAGCGCCGATCACCGGACAGGGGCTCGAGGGAGAACG
AGGACTGCCGGACACAGCCCCGCAAGGACCCACGCTGCCGTCTGCGGGGG
GCGTCTCGCGCGAAAGCGAAACCGAAACCAGTGACCCGCCGGCAAGGTAC
GACCCGACCATGAAGGCCCGTATCCCACGCCTCAAGCAGCTATACTTCGA
TGGCCAAGAAAAGAACTGAGTAATGTTCAAGAACGACCACATGACTCAGG
TAGGTGCAAACGTGCGGAATGATGCATGCTCTGAACGATAGCCGAGACAT
TGAGATCCAAGGGATGGATGACGATGGAATGATAGAACAGGGGGTAGCTG
CAGAAGAGGTTCATGTGTACCGGGATTTGTGGGGCACGTTGGTAGGAGCG
ATTTCAGACGAGACTACCAAGCTTATGGTTTACAATAGTAAGGGGCCCTC
AGCAGCGTGGCGTGCACTTGAGCAGACGTTCACCCCACGAACTGGTGGC

protein sequence of EsuBft943_5a-0001

>EsuBft943_5 ID=EsuBft943_5|Name=EsuBft943_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=183bp
MEALSRLVPETPPAGSTTGAGGGXPHTILVKWTHAVCVWRVRHWRCSPDS
QGGPDRHRPVHRKNGEHDDGKLGTVMEALSRLVPETPPAGSTTGAGGGGE
SRGGRHALPGAGRVDQAPITGQGLEGERGLPDTAPQGPTLPSAGGVSRES
ETETSDPPARYDPTMKARIPRLKQLYFDGQEKN

mRNA from alignment at Scaffold_420:533237..534285-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft943_5a-0001 ID=EsuBft943_5a-0001|Name=EsuBft943_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1049bp|location=Sequence derived from alignment at Scaffold_420:533237..534285- (Ectocarpus subulatus male Bft15b)
GTCAGCCGTGCTTATCCAGCAGCACTAGGCTTGAAACCAATCAACACTCT
AGAGCGAAGGTTATCCCCATACTATCCTAGTGAAGTGGACACATGCCGTC
TGCGTCTGGAGAGTTCGGCATTGGCGGTGCAGCCCCGACTCACAAGGAGG
TCCAGACCGCCATCGACCAGTCCACCGCAAAAATGGAGAGCATGATGACG
GAAAGTTAGGAACCGTCATGGAAGCCCTGTCTCGGTTAGTGCCCGAGACA
CCGCCCGCTGGAAGTACGACCGGAGCGGGCGGCGGGNATCCCCATACTAT
CCTAGTGAAGTGGACACATGCCGTCTGCGTCTGGAGAGTTCGGCATTGGC
GGTGCAGCCCCGACTCACAAGGAGGTCCAGACCGCCATCGACCAGTCCAC
CGCAAAAATGGAGAGCATGATGACGGAAAGTTAGGAACCGTCATGGAAGC
CCTGTCTCGGTTAGTGCCCGAGACACCGCCCGCTGGAAGTACGACCGGAG
CGGGCGGCGGGGGAGAGTCACGGGGGGGAAGGCACGCCCTTCCCGGCGCT
GGTCGTGTGGATCAAGCGCCGATCACCGGACAGGGGCTCGAGGGAGAACG
AGGACTGCCGGACACAGCCCCGCAAGGACCCACGCTGCCGTCTGCGGGGG
GCGTCTCGCGCGAAAGCGAAACCGAAACCAGTGACCCGCCGGCAAGGTAC
GACCCGACCATGAAGGCCCGTATCCCACGCCTCAAGCAGCTATACTTCGA
TGGCCAAGAAAAGAACTGAGTAATGTTCAAGAACGACCACATGACTCAGG
TAGGTGCAAACGTGCGGAATGATGCATGCTCTGAACGATAGCCGAGACAT
TGAGATCCAAGGGATGGATGACGATGGAATGATAGAACAGGGGGTAGCTG
CAGAAGAGGTTCATGTGTACCGGGATTTGTGGGGCACGTTGGTAGGAGCG
ATTTCAGACGAGACTACCAAGCTTATGGTTTACAATAGTAAGGGGCCCTC
AGCAGCGTGGCGTGCACTTGAGCAGACGTTCACCCCACGAACTGGTGGC

Coding sequence (CDS) from alignment at Scaffold_420:533237..534285-

>EsuBft943_5a-0001 ID=EsuBft943_5a-0001|Name=EsuBft943_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=552bp|location=Sequence derived from alignment at Scaffold_420:533237..534285- (Ectocarpus subulatus male Bft15b)
ATGGAAGCCCTGTCTCGGTTAGTGCCCGAGACACCGCCCGCTGGAAGTAC
GACCGGAGCGGGCGGCGGGNATCCCCATACTATCCTAGTGAAGTGGACAC
ATGCCGTCTGCGTCTGGAGAGTTCGGCATTGGCGGTGCAGCCCCGACTCA
CAAGGAGGTCCAGACCGCCATCGACCAGTCCACCGCAAAAATGGAGAGCA
TGATGACGGAAAGTTAGGAACCGTCATGGAAGCCCTGTCTCGGTTAGTGC
CCGAGACACCGCCCGCTGGAAGTACGACCGGAGCGGGCGGCGGGGGAGAG
TCACGGGGGGGAAGGCACGCCCTTCCCGGCGCTGGTCGTGTGGATCAAGC
GCCGATCACCGGACAGGGGCTCGAGGGAGAACGAGGACTGCCGGACACAG
CCCCGCAAGGACCCACGCTGCCGTCTGCGGGGGGCGTCTCGCGCGAAAGC
GAAACCGAAACCAGTGACCCGCCGGCAAGGTACGACCCGACCATGAAGGC
CCGTATCCCACGCCTCAAGCAGCTATACTTCGATGGCCAAGAAAAGAACT
GA