EsuBft940_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft940_7a-0001
Unique NameEsuBft940_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:213430..214788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHQ1
ProteomeIdEsuBft940_7
Protein domainsIPR005474
Protein domainsIPR029061
Protein domainsPTHR11624
Ownerapollo_admin@sb-roscoff.fr
Notechloroplastic os:solanum tuberosum pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length54
Hectar predicted targeting categoryother localisation
Evalue8.01e-91
EggNOG OGsCOG0021@1|root,KOG0523@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransketolase activity
COG categoryG
Cross References
External references for this mRNA
DatabaseAccession
GO0046872
EC2.2.1.1
GO0009832
GO0009535
GO0019253
GO0005829
GO0009750
GO0009651
GO0007030
GO0009570
GO0009051
GO0016049
GO0030243
GO0006816
GO0006833
GO0006972
GO0004802
GO0009941
GO0046686
GO0019288
GO0032880
GO0010075
GO0019344
GO0009266
GO0006096
GO0006094
GO0042744
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft940_7aEsuBft940_7aEctocarpus subulatus male Bft15bgeneScaffold_561 213430..214788 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_7a-0001-exonagat-exon-71459Ectocarpus subulatus male Bft15bexonScaffold_561 213430..213603 +
EsuBft940_7a-0001-exonagat-exon-71458Ectocarpus subulatus male Bft15bexonScaffold_561 213812..213918 +
EsuBft940_7a-0001-exonEsuBft940_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 214527..214788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_7a-0001-cdsEsuBft940_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 213430..213603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_7a-0001EsuBft940_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 213430..214788 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft940_7a-0001 ID=EsuBft940_7a-0001|Name=EsuBft940_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=543bp|location=Sequence derived from alignment at Scaffold_561:213430..214788+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTATTCACACCACCCTATTCCCCTTCGTACATGTACTTGTTTCTT
CCCGTTCGTCCAGGCGATCGACACCGTCCGAGTGCTGGCCGCGGACATCG
TGCAGAAGTCCATGTCCGGCCACCCCGGCGCGCCCATGGGCTGCGCTCCC
ATGGCCCACGTGTTGTTCACCAAGTTCATGAACTTCTCGCCATCCAACCC
GGACTGGCTGGGGCGAGACCGGTTCGTGCTGTCCAACGGGCACGCCTGCG
CCCTGCAGTACATCATGCTGCACCTGTGCGGGTACGGCGTCACGATGGAT
GACCTGAAGAGCTTCAGGCAACTCGACTCCCTGACCCCCGGTCACCCGGA
GAACTTCGTCACCCCCGGAGTGGAAGTGTCCACTGGGCCCCTCGGGCAGG
GCATTTCCAACGCCGTCGGGATGGCCATCGCCGAGAGGCACCTCGCCGCC
ACCTTCAACACGCCCGATTTCCAGGTACTGTTGGTACACTCGGAAGCGTT
TGCAGATACATTCGGCAGTTTGAGGCGGTGCCGTTGGGTATGA
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protein sequence of EsuBft940_7a-0001

>EsuBft940_7 ID=EsuBft940_7|Name=EsuBft940_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MFYSHHPIPLRTCTCFFPFVQAIDTVRVLAADIVQKSMSGHPGAPMGCAP
MAHVLFTKFMNFSPSNPDWLGRDRFVLSNGHACALQYIMLHLCGYGVTMD
DLKSFRQLDSLTPGHPENFVTPGVEVSTGPLGQGISNAVGMAIAERHLAA
TFNTPDFQVLLVHSEAFADTFGSLRRCRWV
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mRNA from alignment at Scaffold_561:213430..214788+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft940_7a-0001 ID=EsuBft940_7a-0001|Name=EsuBft940_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1359bp|location=Sequence derived from alignment at Scaffold_561:213430..214788+ (Ectocarpus subulatus male Bft15b)
ATGTTTTATTCACACCACCCTATTCCCCTTCGTACATGTACTTGTTTCTT
CCCGTTCGTCCAGGCGATCGACACCGTCCGAGTGCTGGCCGCGGACATCG
TGCAGAAGTCCATGTCCGGCCACCCCGGCGCGCCCATGGGCTGCGCTCCC
ATGGCCCACGTGTTGTTCACCAAGGTGAGAATGTCCTCCACGCCATGATG
TGTATGGACAGCAGTGTGATGCGTAGCATGCCGGTACCCTTGCTTGATGA
TATGTACGAACACCACCCACAAGCAAGCCGACGTGTTCCCTGTCTAACTT
TGCCCTCAAGTTGTCCCCAACGCTGGTAATGATCATGGCTTCCGCATGGC
GTTCCGTTTGACCCACCAACGAATCCCATCAGTTCATGAACTTCTCGCCA
TCCAACCCGGACTGGCTGGGGCGAGACCGGTTCGTGCTGTCCAACGGGCA
CGCCTGCGCCCTGCAGTACATCATGCTGCACCTGTGCGGGTGAGAGTTGT
TGTTGTTATTGTTGTCTTCACATTAGAGTGAAAGGGTTACAACTGCGAGG
GAAGTTCAAGTTTGTTAAATTTCCCCTTAGCACCCCCCACACCATTTTTT
GCAAGCCGAGAATTTGTTTTATGCCAATTCCGAAGTTTTGTCAATCCTGT
GCTCGTTTCCCTTTTTTCTTATACCGCGGTTTTCTGGCTCGCATGCTTGT
TAGCTTTAAACGCTACTGGTGTGTGTTCGTCCCATCTGTTCTGGTGTGCG
ATGTAGAGCTTTTTTCTGGGCCCATCTGATGGAATCGATATCGTTGTATT
TTTCGTAGCCGGAGATGTTCCTGCTTTCTGATTTCGAGTGGTTTGGTTTA
TCGAAAGCCAAGACCCGAAACAGCCCAGTCTCATCAGGGTCAAAGGACTT
TCGTGATGATTATTCCACGTACATGCATGTTCTGACTAAGCTGTAGGCAA
TGACTGCACATTGTCTTGAAGAAGGGCAGGGTCCCTCCAGGCTTGAATAC
AAATGAGAGCGTATACAAGTTGATTCAACAAGTGGCCCCTTCGTTCTGTT
TTTTTTCTGTTTTTCTCCAATCATCGTCTTCGTCGGCATACGGCCAGGTA
CGGCGTCACGATGGATGACCTGAAGAGCTTCAGGCAACTCGACTCCCTGA
CCCCCGGTCACCCGGAGAACTTCGTCACCCCCGGAGTGGAAGTGTCCACT
GGGCCCCTCGGGCAGGGCATTTCCAACGCCGTCGGGATGGCCATCGCCGA
GAGGCACCTCGCCGCCACCTTCAACACGCCCGATTTCCAGGTACTGTTGG
TACACTCGGAAGCGTTTGCAGATACATTCGGCAGTTTGAGGCGGTGCCGT
TGGGTATGA
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Coding sequence (CDS) from alignment at Scaffold_561:213430..214788+

>EsuBft940_7a-0001 ID=EsuBft940_7a-0001|Name=EsuBft940_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_561:213430..214788+ (Ectocarpus subulatus male Bft15b)
ATGTTTTATTCACACCACCCTATTCCCCTTCGTACATGTACTTGTTTCTT
CCCGTTCGTCCAGGCGATCGACACCGTCCGAGTGCTGGCCGCGGACATCG
TGCAGAAGTCCATGTCCGGCCACCCCGGCGCGCCCATGGGCTGCGCTCCC
ATGGCCCACGTGTTGTTCACCAAGTTCATGAACTTCTCGCCATCCAACCC
GGACTGGCTGGGGCGAGACCGGTTCGTGCTGTCCAACGGGCACGCCTGCG
CCCTGCAGTACATCATGCTGCACCTGTGCGGGTACGGCGTCACGATGGAT
GACCTGAAGAGCTTCAGGCAACTCGACTCCCTGACCCCCGGTCACCCGGA
GAACTTCGTCACCCCCGGAGTGGAAGTGTCCACTGGGCCCCTCGGGCAGG
GCATTTCCAACGCCGTCGGGATGGCCATCGCCGAGAGGCACCTCGCCGCC
ACCTTCAACACGCCCGATTTCCAGGTACTGTTGGTACACTCGGAAGCGTT
TGCAGATACATTCGGCAGTTTGAGGCGGTGCCGTTGGGTATGA
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