EsuBft937_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft937_8a-0001
Unique NameEsuBft937_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:131169..134433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXC2
ProteomeIdEsuBft937_8
Protein domainsIPR001680
Protein domainsIPR015943
Protein domainsIPR017986
Ownerapollo_admin@sb-roscoff.fr
Notepeptidylprolyl isomerase domain and wd repeat-containing protein 1 os:mus musculus gn:ppwd1 pe: [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length600
Evalue9.09e-84
EggNOG OGsKOG0882@1|root,KOG0882@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePPWD1
KEGG koko:K12736,ko:K14569
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000785,GO:0000790,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0034641,GO:0036211,GO:0040008,GO:0040029,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048519,GO:0048523,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000280,GO:2001141
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko03009,ko03041,ko03110
Cross References
External references for this mRNA
DatabaseAccession
GO0019219
GO0010305
GO0042393
GO0003682
GO0048453
GO0009416
GO0009933
GO0006281
GO0031060
GO0010082
GO0016567
GO0008380
GO0010358
GO0010338
GO0033036
GO0048522
GO0071013
GO0009909
GO0048443
GO0048440
GO0005515
GO0000003
GO0007049
GO0006310
GO0048468
GO0006397
GO0043234
GO0065008
GO0016853
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft937_8aEsuBft937_8aEctocarpus subulatus male Bft15bgeneScaffold_376 131169..134433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_8a-0001EsuBft937_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 131169..134433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_8a-0001-exonagat-exon-34390Ectocarpus subulatus male Bft15bexonScaffold_376 131169..131282 -
EsuBft937_8a-0001-exonagat-exon-34391Ectocarpus subulatus male Bft15bexonScaffold_376 132487..132699 -
EsuBft937_8a-0001-exonEsuBft937_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 133289..133313 -
EsuBft937_8a-0001-exonagat-exon-34392Ectocarpus subulatus male Bft15bexonScaffold_376 133694..133707 -
EsuBft937_8a-0001-exonagat-exon-34393Ectocarpus subulatus male Bft15bexonScaffold_376 134200..134433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_8a-0001-cdsEsuBft937_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 131169..131282 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=600bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTGAAAAAATCCCGGG
CTGCTGAGAAGGCATTTCTAAAGGTGTACCTCGAAGCCCTGCCAGCGGCG
CCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTAAGCCACGTCCT
CATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAGCCTGGACGGGC
ACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGTTCGTCAAGCAC
TACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTATCGAGGGACGG
TCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCATAAAGTTCTACGACG
TTGTTTCGTTCGACATGAGCCACATGATCGCCCTCGGCTACACGCCCNNN
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protein sequence of EsuBft937_8a-0001

>EsuBft937_8 ID=EsuBft937_8|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MAKPGEDETSSAKRKKAQQEPEESESSSEDEAGPQPAAPGQLGEDSDTDG
EAGPPAPAPVKQKKKRKLAHEKVDEGGGVKKSRAAEKAFLKVYLEALPAA
PMYERSYMHRDVVSHVLMTPCGTDFLVTASLDGHIKFWKKMPEGVEFVKH
YHSHLEPIHDLAVSRDGQRLCTTSADKSIKFYDVVSFDMSHMIALGYTPX
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mRNA from alignment at Scaffold_376:131169..134433-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3265bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTACTCGTGTAGACGC
GTGCCGTAGTCGTTAGACTGTTGACTTCGAATAGGATGGGTCGGTGAGGG
GGGGGCGGGGGGGGGGGGTCCTCCTAGTCGTGCATGCCGTAGTCGTTAGA
CCATTGACCTCGCATCCCTACAAGCCGGGACGGAGCACGCCGGGTTCTCA
CCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGATATTCGG
CGGGTCGCATGAAGGGTGCGCTGCATGCTGCTAAGGGTGTTCGGCGTCTT
GTGCTTACTTTCTTGCGTACGGATGACAGCTGCGTATGACTTTATTTATT
TTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGCGTAACTGCCT
CGAGGGTGCTTGACCAATTTAACACAACGTGGTGCGATCATCCCCCTTGC
GCGGAGTGAGGGTTCTCCACCCCGCACAACATGATCCACTCGACCACCAG
TATGGTTACCGCCAAAAGAAAAACAGGTGAAAAAATCCCGGTAACATGGT
TGCCGAGTTCACGAAGTGAATTGGCTTCTTTAACAACGTCGTTGCCAAGC
GACGAACACCCAATCCCAATGGCAAACGCCGATGGGGGGTCATGGGGGAG
GGGGGTCTTTCGCATCCACCGCGCTAACCGGCTGACGGGTGAAGAGACCT
CAGTCTCCGGGCGGCTAAAAAACCGTGTTTGAAGATGGGAGTATGGGGGG
GAGTACTCATGTTTTTCGTGCCTTAGCTGTTAGACCGTTGACCACGCGTC
CTCCAGAGGACTGAGCATTGTTCCCATTGAACGGATCGTACCTATCCTAT
CTTGGTCAAAGGGGGGGCATTGACATCGACCGCGCCAACCGGCTAGCCAG
TGATTAGACACTAGTCTCAGGGCTGCTGAGAAGGCATTTCTAAAGGTAAT
GTGTGTGTGTTAGTTTCAGTAGGATCGGTCAACCGAAGCGGTTGTCCAAT
CAAATTATTTCAGTCTCAAAAGGTGTGTGTAGTTATGCGTTCCTTTCAAC
ATGACTGTTCGCTTACAGGGTTACGCCAACCATGTGCCTGCCTCGCCATG
TGCCGTAGGGTCCCATTTGGACGGCAAACCCCACCTTGTCTGAACCTTTC
ACGCGATGGCTCTCCCAAAATGTGACGTCGAAGCAGGTGTACATGCCTCC
CCATCTGCCGTAGAATACCATCTGCCGTAGGATACCATCTGCCATAGAAA
ACCGTCTGCCGTAGGATACCATCTGCCGTAGGACACCATCTGCGGTAGGA
CACCATCTGCCGTAGGACACCATCTGCCGTAGGATACCACCTGCCGTATA
ATAGCATCTGCCGTAGAATAACATCTGCCGTAGAACACCATCACCGAGTT
GGACGGAGAACCCCACCTCGTTCGTACCTACCTATGCGATTGCTCTCCCA
CACCGAACATGCATAGACCGAAGCGCCCACCCTGCTTGTACCTACCGATG
CGATTTGCTCTCCTACATTGTGACGTCCAAGCAGGTGTACCTCGAAGCCC
TGCCAGCGGCGCCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTA
AGCCACGTCCTCATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAG
CCTGGACGGGCACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGT
TCGTCAAGCACTACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTG
AAGAAGCAGCGTCGTTTTTCCTTTCTTTTTTTTGTCACTTATGGGATCCT
ACAAGCTCATCACGAAAACAATACAAGCCCCTCACCTTTCTCTGTAGAAT
CTGCCAGGGAGAGCTATCTCCGTAGATATTGCCAGGAGCTTCTCCGTAGG
TTTGCTTGGAGCCAGGAGCTGCCGGGGGGGGGGAGTGTACTCATAGTCGT
GCATGCCGCAGTCGTGAGACCATTGACCTCGCATCCCTACACAGCCGGGA
CGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCG
AAGAGCCGTGAGATATTCGGCGAGTCGCATGAAGGNTCCCCCTTGCGCGG
AGTGAGGGTTCTCCACCCCGCGCAACATGATCTACTGGACCACCATTATG
GTTACCGCCAAAAAAAAAAATGGAGGTGAAAAAAAACGGTAACCTGGTTG
CCGAGTTCACGAAGTGAAATGGCTTCTTTAACAACGTCGTTGCCAAGCGA
CGAAAACCCAACCCCGATGGCAAACACCGGGAGGAGCCTTGGGGGGGGGG
TAGGGGTAACCACCACCCCCCTCCCCTCGCTCCCCAAGCGGCCGGTGCAT
GAAACATTCCATGTGAAGTTGGCGCCAGAAGAGATGGAACCAAAAAAACA
CACCAAGCACACCACCCCCGTTGGTTTTCAGAAACACAACGAATTACCGT
ATATGACACAAGATAACACCCCCCCCTGGACCGATTTTCAAAGGTCGATC
ACGCCATGACGAAGGGGATGCACAAATGAAAACAATACATTTTCGGAAAG
CTCTCGACGAGATAGCTTCAACGCCACGGTGTTCGGCGCTGTGACTCTTT
CCTGTTGTTGAGAAATGACATTTGAAAACCGGTCTAGGGGGTGTGTTATC
TTGTGTCATATATAGTAATCTCTTCCGCATATGAGAGTCCGGGGTAGGTT
AGCAGTGAATTCATCGCATGGTATGCATATGATGGCCAACCGGTGTTGGG
TCTTGGCAACCCCAGAGCAGCAACATCTCGTGCCATGTGGGCAACAGGCT
CTACGCCACAATTTGTTTTTATTTTCATATTTCTGTCTTGCAGGTATCGA
GCGAGGGCAATCCCCGAGCAGTATGAAGCAACATCTCATACGATGTGGGC
AACAGGTTCTAGAGACAATGTTCAAGTTTTCTTCCCTTTTTTTTTTTGCA
GGTATCGAGGGACGGTCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCA
TAAAGTTCTACGACGTTGTTTCGTTCGACATGAGCCACATGATCGCCCTC
GGCTACACGCCCNNN
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Coding sequence (CDS) from alignment at Scaffold_376:131169..134433-

>EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=600bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTGAAAAAATCCCGGG
CTGCTGAGAAGGCATTTCTAAAGGTGTACCTCGAAGCCCTGCCAGCGGCG
CCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTAAGCCACGTCCT
CATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAGCCTGGACGGGC
ACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGTTCGTCAAGCAC
TACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTATCGAGGGACGG
TCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCATAAAGTTCTACGACG
TTGTTTCGTTCGACATGAGCCACATGATCGCCCTCGGCTACACGCCCNNN
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