EsuBft937_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	2880.D7FXC2
ProteomeId	EsuBft937_8
Protein domains	IPR001680
Protein domains	IPR015943
Protein domains	IPR017986
Owner	apollo_admin@sb-roscoff.fr
Note	peptidylprolyl isomerase domain and wd repeat-containing protein 1 os:mus musculus gn:ppwd1 pe: [Automatic annotation]
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	600
Evalue	9.09e-84
EggNOG OGs	KOG0882@1\|root,KOG0882@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	PPWD1
KEGG ko	ko:K12736,ko:K14569
KEGG Pathway	ko03008,map03008
GOs	GO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000785,GO:0000790,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0034641,GO:0036211,GO:0040008,GO:0040029,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048519,GO:0048523,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000280,GO:2001141
EC	5.2.1.8
Description	peptidyl-prolyl cis-trans isomerase activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03009,ko03041,ko03110

Cross References

External references for this mRNA


Database	Accession
GO	0019219
GO	0010305
GO	0042393
GO	0003682
GO	0048453
GO	0009416
GO	0009933
GO	0006281
GO	0031060
GO	0010082
GO	0016567
GO	0008380
GO	0010358
GO	0010338
GO	0033036
GO	0048522
GO	0071013
GO	0009909
GO	0048443
GO	0048440
GO	0005515
GO	0000003
GO	0007049
GO	0006310
GO	0048468
GO	0006397
GO	0043234
GO	0065008
GO	0016853

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_376:131169..134433-
coding sequence from alignment at Scaffold_376:131169..134433-

spliced messenger RNA

>EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=600bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTGAAAAAATCCCGGG
CTGCTGAGAAGGCATTTCTAAAGGTGTACCTCGAAGCCCTGCCAGCGGCG
CCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTAAGCCACGTCCT
CATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAGCCTGGACGGGC
ACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGTTCGTCAAGCAC
TACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTATCGAGGGACGG
TCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCATAAAGTTCTACGACG
TTGTTTCGTTCGACATGAGCCACATGATCGCCCTCGGCTACACGCCCNNN

protein sequence of EsuBft937_8a-0001

>EsuBft937_8 ID=EsuBft937_8|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MAKPGEDETSSAKRKKAQQEPEESESSSEDEAGPQPAAPGQLGEDSDTDG
EAGPPAPAPVKQKKKRKLAHEKVDEGGGVKKSRAAEKAFLKVYLEALPAA
PMYERSYMHRDVVSHVLMTPCGTDFLVTASLDGHIKFWKKMPEGVEFVKH
YHSHLEPIHDLAVSRDGQRLCTTSADKSIKFYDVVSFDMSHMIALGYTPX

mRNA from alignment at Scaffold_376:131169..134433-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3265bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTACTCGTGTAGACGC
GTGCCGTAGTCGTTAGACTGTTGACTTCGAATAGGATGGGTCGGTGAGGG
GGGGGCGGGGGGGGGGGGTCCTCCTAGTCGTGCATGCCGTAGTCGTTAGA
CCATTGACCTCGCATCCCTACAAGCCGGGACGGAGCACGCCGGGTTCTCA
CCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGATATTCGG
CGGGTCGCATGAAGGGTGCGCTGCATGCTGCTAAGGGTGTTCGGCGTCTT
GTGCTTACTTTCTTGCGTACGGATGACAGCTGCGTATGACTTTATTTATT
TTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGCGTAACTGCCT
CGAGGGTGCTTGACCAATTTAACACAACGTGGTGCGATCATCCCCCTTGC
GCGGAGTGAGGGTTCTCCACCCCGCACAACATGATCCACTCGACCACCAG
TATGGTTACCGCCAAAAGAAAAACAGGTGAAAAAATCCCGGTAACATGGT
TGCCGAGTTCACGAAGTGAATTGGCTTCTTTAACAACGTCGTTGCCAAGC
GACGAACACCCAATCCCAATGGCAAACGCCGATGGGGGGTCATGGGGGAG
GGGGGTCTTTCGCATCCACCGCGCTAACCGGCTGACGGGTGAAGAGACCT
CAGTCTCCGGGCGGCTAAAAAACCGTGTTTGAAGATGGGAGTATGGGGGG
GAGTACTCATGTTTTTCGTGCCTTAGCTGTTAGACCGTTGACCACGCGTC
CTCCAGAGGACTGAGCATTGTTCCCATTGAACGGATCGTACCTATCCTAT
CTTGGTCAAAGGGGGGGCATTGACATCGACCGCGCCAACCGGCTAGCCAG
TGATTAGACACTAGTCTCAGGGCTGCTGAGAAGGCATTTCTAAAGGTAAT
GTGTGTGTGTTAGTTTCAGTAGGATCGGTCAACCGAAGCGGTTGTCCAAT
CAAATTATTTCAGTCTCAAAAGGTGTGTGTAGTTATGCGTTCCTTTCAAC
ATGACTGTTCGCTTACAGGGTTACGCCAACCATGTGCCTGCCTCGCCATG
TGCCGTAGGGTCCCATTTGGACGGCAAACCCCACCTTGTCTGAACCTTTC
ACGCGATGGCTCTCCCAAAATGTGACGTCGAAGCAGGTGTACATGCCTCC
CCATCTGCCGTAGAATACCATCTGCCGTAGGATACCATCTGCCATAGAAA
ACCGTCTGCCGTAGGATACCATCTGCCGTAGGACACCATCTGCGGTAGGA
CACCATCTGCCGTAGGACACCATCTGCCGTAGGATACCACCTGCCGTATA
ATAGCATCTGCCGTAGAATAACATCTGCCGTAGAACACCATCACCGAGTT
GGACGGAGAACCCCACCTCGTTCGTACCTACCTATGCGATTGCTCTCCCA
CACCGAACATGCATAGACCGAAGCGCCCACCCTGCTTGTACCTACCGATG
CGATTTGCTCTCCTACATTGTGACGTCCAAGCAGGTGTACCTCGAAGCCC
TGCCAGCGGCGCCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTA
AGCCACGTCCTCATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAG
CCTGGACGGGCACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGT
TCGTCAAGCACTACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTG
AAGAAGCAGCGTCGTTTTTCCTTTCTTTTTTTTGTCACTTATGGGATCCT
ACAAGCTCATCACGAAAACAATACAAGCCCCTCACCTTTCTCTGTAGAAT
CTGCCAGGGAGAGCTATCTCCGTAGATATTGCCAGGAGCTTCTCCGTAGG
TTTGCTTGGAGCCAGGAGCTGCCGGGGGGGGGGAGTGTACTCATAGTCGT
GCATGCCGCAGTCGTGAGACCATTGACCTCGCATCCCTACACAGCCGGGA
CGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCG
AAGAGCCGTGAGATATTCGGCGAGTCGCATGAAGGNTCCCCCTTGCGCGG
AGTGAGGGTTCTCCACCCCGCGCAACATGATCTACTGGACCACCATTATG
GTTACCGCCAAAAAAAAAAATGGAGGTGAAAAAAAACGGTAACCTGGTTG
CCGAGTTCACGAAGTGAAATGGCTTCTTTAACAACGTCGTTGCCAAGCGA
CGAAAACCCAACCCCGATGGCAAACACCGGGAGGAGCCTTGGGGGGGGGG
TAGGGGTAACCACCACCCCCCTCCCCTCGCTCCCCAAGCGGCCGGTGCAT
GAAACATTCCATGTGAAGTTGGCGCCAGAAGAGATGGAACCAAAAAAACA
CACCAAGCACACCACCCCCGTTGGTTTTCAGAAACACAACGAATTACCGT
ATATGACACAAGATAACACCCCCCCCTGGACCGATTTTCAAAGGTCGATC
ACGCCATGACGAAGGGGATGCACAAATGAAAACAATACATTTTCGGAAAG
CTCTCGACGAGATAGCTTCAACGCCACGGTGTTCGGCGCTGTGACTCTTT
CCTGTTGTTGAGAAATGACATTTGAAAACCGGTCTAGGGGGTGTGTTATC
TTGTGTCATATATAGTAATCTCTTCCGCATATGAGAGTCCGGGGTAGGTT
AGCAGTGAATTCATCGCATGGTATGCATATGATGGCCAACCGGTGTTGGG
TCTTGGCAACCCCAGAGCAGCAACATCTCGTGCCATGTGGGCAACAGGCT
CTACGCCACAATTTGTTTTTATTTTCATATTTCTGTCTTGCAGGTATCGA
GCGAGGGCAATCCCCGAGCAGTATGAAGCAACATCTCATACGATGTGGGC
AACAGGTTCTAGAGACAATGTTCAAGTTTTCTTCCCTTTTTTTTTTTGCA
GGTATCGAGGGACGGTCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCA
TAAAGTTCTACGACGTTGTTTCGTTCGACATGAGCCACATGATCGCCCTC
GGCTACACGCCCNNN

Coding sequence (CDS) from alignment at Scaffold_376:131169..134433-

>EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=600bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTGAAAAAATCCCGGG
CTGCTGAGAAGGCATTTCTAAAGGTGTACCTCGAAGCCCTGCCAGCGGCG
CCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTAAGCCACGTCCT
CATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAGCCTGGACGGGC
ACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGTTCGTCAAGCAC
TACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTATCGAGGGACGG
TCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCATAAAGTTCTACGACG
TTGTTTCGTTCGACATGAGCCACATGATCGCCCTCGGCTACACGCCCNNN