EsuBft936_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft936_16a-0001
Unique NameEsuBft936_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:127247..128327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft936_16
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length56
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft936_16aEsuBft936_16aEctocarpus subulatus male Bft15bgeneScaffold_350 127247..128327 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_16a-0001-exonagat-exon-78560Ectocarpus subulatus male Bft15bexonScaffold_350 127247..127291 -
EsuBft936_16a-0001-exonEsuBft936_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 127805..128327 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_16a-0001-exonagat-three_prime_utr-23231Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 127247..127291 -
EsuBft936_16a-0001-exonagat-three_prime_utr-23232Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 127805..128156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_16a-0001-cdsEsuBft936_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 128157..128327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_16a-0001EsuBft936_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 128157..128327 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft936_16a-0001 ID=EsuBft936_16a-0001|Name=EsuBft936_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=568bp|location=Sequence derived from alignment at Scaffold_350:127247..128327- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGGGAATTGCTGCTTACACCGACCGCCTGGAGGCCCGCGCATCT
GCACCTTTGTACCTGGCGCACCAGTGCCGACCCAACTCCACCACTGCGCA
CGCCTCGCGGCGGGTGCGCCGCAGCAAGAAGGTATCGGTCCCTTGAGGGT
GAGTCTAGCCCTATTCGCTAGAAAGACCTCCCCCCCCCCTCTCGGTGTTT
GCCATCGAGGTTGGGTTTTCGTCGCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCACAGGGGATGATCGCACCACGTTGTGTTAA
AATGGTCAAGCACCCTCG
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protein sequence of EsuBft936_16a-0001

>EsuBft936_16 ID=EsuBft936_16|Name=EsuBft936_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MKRELLLTPTAWRPAHLHLCTWRTSADPTPPLRTPRGGCAAARRYRSLEG
ESSPIR
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mRNA from alignment at Scaffold_350:127247..128327-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft936_16a-0001 ID=EsuBft936_16a-0001|Name=EsuBft936_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1081bp|location=Sequence derived from alignment at Scaffold_350:127247..128327- (Ectocarpus subulatus male Bft15b)
ATGAAAAGGGAATTGCTGCTTACACCGACCGCCTGGAGGCCCGCGCATCT
GCACCTTTGTACCTGGCGCACCAGTGCCGACCCAACTCCACCACTGCGCA
CGCCTCGCGGCGGGTGCGCCGCAGCAAGAAGGTATCGGTCCCTTGAGGGT
GAGTCTAGCCCTATTCGCTAGAAAGACCTCCCCCCCCCCTCTCGGTGTTT
GCCATCGAGGTTGGGTTTTCGTCGCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCACAGTGCTTACAACTGTCTCTGGAAGTGAA
AGCACCAGAGAATAAATAAAGTCATACGCAGCTGTCATCCGAACGCAAGG
AAGTAAGCATAAGATGCCGAACTCCCTTAGCAGGATGCAGCGTACCCTTC
ATGCGACTCGCCGAATATCTCACGGCGCTTCGCGCTTGGTGATGTGAGAG
CCTGGTCCGGTGAGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGTTTTCGTCGCTTGGCAACGACGTTGTAAAAC
AAGCGAATTCACTTCGTGAACGCGGCAACCAGGTTACCGATTTTTTTTTT
TTCCTCCGTTTATTTTTTTTGGGCGGTAACCATAATGATGGTTGAGTAGA
TCATGTTGTGCGGGGTGAACCCTCACTCCGCGCAAGGGGGATGATCGCAC
CACGTTGTGTTAAAATGGTCAAGCACCCTCG
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Coding sequence (CDS) from alignment at Scaffold_350:127247..128327-

>EsuBft936_16a-0001 ID=EsuBft936_16a-0001|Name=EsuBft936_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_350:127247..128327- (Ectocarpus subulatus male Bft15b)
ATGAAAAGGGAATTGCTGCTTACACCGACCGCCTGGAGGCCCGCGCATCT
GCACCTTTGTACCTGGCGCACCAGTGCCGACCCAACTCCACCACTGCGCA
CGCCTCGCGGCGGGTGCGCCGCAGCAAGAAGGTATCGGTCCCTTGAGGGT
GAGTCTAGCCCTATTCGCTAG
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