EsuBft935_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft935_5a-0001
Unique Name	EsuBft935_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_621	contig	Scaffold_621:493207..495399 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LNP3
ProteomeId	EsuBft935_5
Protein domains	IPR023379
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	70
Hectar predicted targeting category	other localisation
Evalue	2.18e-126
EggNOG OGs	2C07X@1\|root,2S28G@2759\|Eukaryota
Ec32 ortholog description	ADP-ribosylation factor-like 2-binding protein, domain
Ec32 ortholog	Ec-08_006370.1
Date last modified	2016-06-13
Date creation	2016-06-13
Description	The ARF-like 2 binding protein BART
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft935_5a	EsuBft935_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_621 493207..495399 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft935_5a-0001	EsuBft935_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_621 493343..495399 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft935_5a-0001-exon	agat-exon-90138	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 493207..493585 -
EsuBft935_5a-0001-exon	EsuBft935_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 494203..494273 -
EsuBft935_5a-0001-exon	agat-exon-90136	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 494875..494974 -
EsuBft935_5a-0001-exon	agat-exon-90137	Ectocarpus subulatus male Bft15b	exon	Scaffold_621 495244..495399 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft935_5a-0001-exon	agat-three_prime_utr-23219	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_621 493207..493342 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft935_5a-0001-cds	EsuBft935_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_621 493343..493585 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_621:493207..495399-
coding sequence from alignment at Scaffold_621:493207..495399-

spliced messenger RNA

>EsuBft935_5a-0001 ID=EsuBft935_5a-0001|Name=EsuBft935_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=706bp|location=Sequence derived from alignment at Scaffold_621:493207..495399- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAGAGGGACTCGCACGGAGACCAAGGCGAATGCAAGGGGCAGGG
CGGAGGGGAACATGACCTCCTGGCAAAGGCGATCAAGCATTGCTGGAGTG
ATGATTTCCTCGATGTCTTTCGAGCTTACTTCCGCAAGCATGCGGAAGTA
TTCGAGGTGATGGCGGATGGGAAGTCCGAAGAGCACGCCCTTGAGTACCA
AGAGTTGTTCAATGAGTACTTGTTGATCTTTGAGGGGAAGCTGGAGGGCT
TCATAGAGAGGGAAGGGAGCACAATCAACGAGTTCTACACTGTCATCAGA
GACCACCAGACCAACCCAGACCCGCAGGTACAGCTGTTCATAAACTGCTT
GTTGGCCTCCGCCGACTACGACAGCTTTTTCAACGTCATGAAAAAGGAGG
CTGAGAAGTCTCTGAGGAAGAAGCGCCATCTTGGTCAGGAGGGCAAGCTA
ACCGCTGGAAGCGAGGGCAAGGAGCCGGACTCGGTGCCACGAGGTGGCGT
CCCTTCCACGGGGGAGGGGAAATATTCGGAAGATGACCGGCGTCACTCGG
GCGAGCGTTCGTACAAGTAGAGAGCCGCACTCGACATCGGAGGAAAGTCT
GTGACTTTCCCGTTCGTACATCGGTACTTCATCTGATGCTGTCAGCCAGA
CGCGACCGAGCATCAATCCTATCGCTCATGCCGTCTGGAGCGTAGAGCCC
ACGTAG

protein sequence of EsuBft935_5a-0001

>EsuBft935_5 ID=EsuBft935_5|Name=EsuBft935_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MPKRDSHGDQGECKGQGGGEHDLLAKAIKHCWSDDFLDVFRAYFRKHAEV
FEVMADGKSEEHALEYQELFNEYLLIFEGKLEGFIEREGSTINEFYTVIR
DHQTNPDPQVQLFINCLLASADYDSFFNVMKKEAEKSLRKKRHLGQEGKL
TAGSEGKEPDSVPRGGVPSTGEGKYSEDDRRHSGERSYK

mRNA from alignment at Scaffold_621:493207..495399-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft935_5a-0001 ID=EsuBft935_5a-0001|Name=EsuBft935_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2193bp|location=Sequence derived from alignment at Scaffold_621:493207..495399- (Ectocarpus subulatus male Bft15b)
ATGCCAAAGAGGGACTCGCACGGAGACCAAGGCGAATGCAAGGGGCAGGG
CGGAGGGGAACATGACCTCCTGGCAAAGGCGATCAAGCATTGCTGGAGTG
ATGATTTCCTCGATGTCTTTCGAGCTTACTTCCGCAAGCATGCGGAAGTA
TTCGAGGTTCGGAAGTTGCAGGGTTTGTTCCGGAATATACAAGAGTCATT
GGGGGCGAAGCGACGTAACTACTTCCCATCCCAATGAACACATGCGCACA
ACACGGTCTGAGCGCCTGCAAAACGTATACCGTGTAGCCCAAGCATCGTG
GAAACCGTCCTACATCATCATCCAGCTTGCTGTACAACCCAGTGGTCCAA
ACACAAGTTATATCTGTACGAAGACGGTAACTCCTGGTGGTGTCTGCCAA
TGTATCCACCGCAAATATTCCGCAGGTGATGGCGGATGGGAAGTCCGAAG
AGCACGCCCTTGAGTACCAAGAGTTGTTCAATGAGTACTTGTTGATCTTT
GAGGGGAAGCTGGAGGGCTTCATAGGTAAGTCGTAAAGTGTGTACATATC
AGTCTTTTGCCCGACAGCAAAGATTAGTCGTGGCAAGCGGTGTACAGTAA
ATATAAGAAGAATGCAGACAAGCCTAGAAATAGGAAGTCGGTTTTGGCAT
AATGGTGGGGTGAATGTCAATAGCTGTTTCGGTGTGGCCCTCGCCCAGGG
TCTAAATATGCGTGACATGCGCTGAGCTGCGAGCAAAGTCAGTCAAAATC
ACGTTTTCAATGCTGTCCGTATCCAGTTGTTTCGTAGAAAAACGTTGAGA
GCAAGGGATCGTCCTCCGAAAGATATGTCACGTGTTCAGTTCTTGACGAG
GAAGATCCTTCGTGTTTCCAGTCTCCAAGAGGGCTTCAAACATGCAGAGC
TTCACCCCAGACGAGGCGTCCGCCAAACTGACGCGTCCCTTCTGACAGGA
GCCACGATCACGTATAGAAGGAGAGCAATATGGTCAATCAGAAGGAGCCA
ACGGCAAAAAAACTCGTTCTAGATGTCTGTACCCCTTAACTGCTGTGTTT
CCGGTGGGTACAAGGGCTCTCCTGGCTCCGGCTGGTTCCCAGCTCTAACA
CCCATTATCTTGTTGTGCCGAGGCAGAGAGGGAAGGGAGCACAATCAACG
AGTTCTACACTGTCATCAGAGACCACCAGACCAACCCAGACCCGCAGGTA
CCCTCAAGCACACGGGGATCTTCTCAGTGGCATAAACTCGCGTTTGATAC
ACCCCAATTGCGTAGGATGGCCGGTGTGGAACATTCGAAAAAGTCGTTTT
GCAATGTGTGTGGCTTACCGTCAACTGGGCTCTGAGCTTGAACACCAGGG
TTCTACACCCGCCGAAACTTCCATACCCCCTGTGGTTAGATGTCGCGACT
CTACACGACTTGCCCTCCATTGTGTGTCATGAGTGACGGCGGTCATTGTT
GCGAATTTTTCCCAGGTGCTAGATTATGGGAATCCACCAACGACATACTT
GCATACCTTCCCGAAATCCGTGGCCTACGCCTTCCACCGGCGCTTGCCTG
TTGCATCACGAACGCGGGGGCTTGATTGAACAACTCTGTCAATGCATGCT
TCGCCAGTTGTTTTTGGTGATAGAACGTCCCATAAAAGTAATCTGCCGCT
CAATAAGCATCCGCCTGCACGTACATGGAGATATTACTGTTTGATCGAAG
TGGGTGTACTTAATTTCACTGCAACCACAACCACGTACTCCTGTACTTGA
TGCACGGAGTCCCTTACTGACACTGTGCCTGGGTACCGCGATCGACGTGC
TTGAAACCAATCAGGTACAGCTGTTCATAAACTGCTTGTTGGCCTCCGCC
GACTACGACAGCTTTTTCAACGTCATGAAAAAGGAGGCTGAGAAGTCTCT
GAGGAAGAAGCGCCATCTTGGTCAGGAGGGCAAGCTAACCGCTGGAAGCG
AGGGCAAGGAGCCGGACTCGGTGCCACGAGGTGGCGTCCCTTCCACGGGG
GAGGGGAAATATTCGGAAGATGACCGGCGTCACTCGGGCGAGCGTTCGTA
CAAGTAGAGAGCCGCACTCGACATCGGAGGAAAGTCTGTGACTTTCCCGT
TCGTACATCGGTACTTCATCTGATGCTGTCAGCCAGACGCGACCGAGCAT
CAATCCTATCGCTCATGCCGTCTGGAGCGTAGAGCCCACGTAG

Coding sequence (CDS) from alignment at Scaffold_621:493207..495399-

>EsuBft935_5a-0001 ID=EsuBft935_5a-0001|Name=EsuBft935_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_621:493207..495399- (Ectocarpus subulatus male Bft15b)
ATGCCAAAGAGGGACTCGCACGGAGACCAAGGCGAATGCAAGGGGCAGGG
CGGAGGGGAACATGACCTCCTGGCAAAGGCGATCAAGCATTGCTGGAGTG
ATGATTTCCTCGATGTCTTTCGAGCTTACTTCCGCAAGCATGCGGAAGTA
TTCGAGGTGATGGCGGATGGGAAGTCCGAAGAGCACGCCCTTGAGTACCA
AGAGTTGTTCAATGAGTACTTGTTGATCTTTGAGGGGAAGCTGGAGGGCT
TCATAGAGAGGGAAGGGAGCACAATCAACGAGTTCTACACTGTCATCAGA
GACCACCAGACCAACCCAGACCCGCAGGTACAGCTGTTCATAAACTGCTT
GTTGGCCTCCGCCGACTACGACAGCTTTTTCAACGTCATGAAAAAGGAGG
CTGAGAAGTCTCTGAGGAAGAAGCGCCATCTTGGTCAGGAGGGCAAGCTA
ACCGCTGGAAGCGAGGGCAAGGAGCCGGACTCGGTGCCACGAGGTGGCGT
CCCTTCCACGGGGGAGGGGAAATATTCGGAAGATGACCGGCGTCACTCGG
GCGAGCGTTCGTACAAGTAG