EsuBft925_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft925_7a-0001
Unique NameEsuBft925_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_491contigScaffold_491:510266..511195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPQ4
ProteomeIdEsuBft925_7
Protein domainsIPR016040
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length47
Hectar predicted targeting categoryother localisation
Evalue2.39e-17
EggNOG OGsKOG1199@1|root,KOG1199@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameHSD17B10
KEGG rclassRC00525
KEGG koko:K08683
KEGG ReactionR04203
KEGG Pathwayko00280,ko01100,ko01110,ko01130,ko05010,map00280,map01100,map01110,map01130,map05010
GOsGO:0000003,GO:0000049,GO:0000166,GO:0000959,GO:0000963,GO:0000964,GO:0000965,GO:0000966,GO:0001510,GO:0001540,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003857,GO:0004303,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005829,GO:0005886,GO:0006066,GO:0006082,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006520,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007548,GO:0007568,GO:0007569,GO:0008033,GO:0008134,GO:0008150,GO:0008152,GO:0008202,GO:0008205,GO:0008209,GO:0008210,GO:0008289,GO:0008406,GO:0008584,GO:0008709,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009117,GO:0009150,GO:0009259,GO:0009295,GO:0009451,GO:0009791,GO:0009987,GO:0010467,GO:0010817,GO:0012505,GO:0016020,GO:0016043,GO:0016054,GO:0016070,GO:0016125,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0018454,GO:0019637,GO:0019693,GO:0019752,GO:0022414,GO:0022607,GO:0030154,GO:0030283,GO:0030331,GO:0030488,GO:0030677,GO:0030678,GO:0031123,GO:0031974,GO:0032259,GO:0032501,GO:0032502,GO:0032787,GO:0032991,GO:0033218,GO:0033327,GO:0033764,GO:0033865,GO:0033875,GO:0034032,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0034754,GO:0035257,GO:0035258,GO:0035383,GO:0036094,GO:0042180,GO:0042277,GO:0042445,GO:0042645,GO:0042780,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044260,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045455,GO:0046395,GO:0046483,GO:0046546,GO:0046661,GO:0047022,GO:0047035,GO:0048037,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050662,GO:0051186,GO:0051259,GO:0051260,GO:0051262,GO:0051287,GO:0051289,GO:0051427,GO:0055086,GO:0055114,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0070900,GO:0070901,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0090304,GO:0090646,GO:0097159,GO:0097745,GO:0098798,GO:0099116,GO:0140053,GO:1900864,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901615,GO:1902494,GO:1902555,GO:1902652,GO:1905348,GO:1990180,GO:1990904
EC1.1.1.178,1.1.1.35
Description3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko03029,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft925_7aEsuBft925_7aEctocarpus subulatus male Bft15bgeneScaffold_491 510266..511195 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_7a-0001-exonagat-exon-45099Ectocarpus subulatus male Bft15bexonScaffold_491 510266..510675 -
EsuBft925_7a-0001-exonEsuBft925_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_491 510931..510977 -
EsuBft925_7a-0001-exonagat-exon-45098Ectocarpus subulatus male Bft15bexonScaffold_491 511180..511195 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_7a-0001-exonagat-three_prime_utr-23122Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 510266..510489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_7a-0001-cdsEsuBft925_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_491 510490..510675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_7a-0001EsuBft925_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_491 510490..511195 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft925_7a-0001 ID=EsuBft925_7a-0001|Name=EsuBft925_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=473bp|location=Sequence derived from alignment at Scaffold_491:510266..511195- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGTTTGGAGGGACGGAGGGCCCATTGCCCCACGCGGAAGCTGA
GCCACGAACACAAGTCACCAGCGAGACAGATGTGACTCGAGCGCTGGACC
TTGCGAGAGCCGAGTTCGGATCGACCCCCTTCGTCGCGGTCAACTGCGCC
GGCATCGGCTACGCCAAACGCACCATCTCAAGGTGTGTTGTGCGACTTGG
TTGTTCCATGTGGTATGCATGGCGCATCACTAAGAAGCAAGTAGCATGAC
TCGCTGTACTCTAGAAGTACTACGGGGGCACGAAAACTGTTCCTCACACG
GGATCATGAAGTTTCCTGGTTGAATCGATTTCGCATGCTTCGGCAGGTTT
CATGCCGCCTCAACCTGCACGCGACACGCACTGTCCCCGCAAAACGCAAG
TGGCTGATCCACTGCCGGTGCCCTGTCTTGTACAACTCCCAGGTTGCTTG
TGTGAGGACAAAAAAACAGTGAT
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protein sequence of EsuBft925_7a-0001

>EsuBft925_7 ID=EsuBft925_7|Name=EsuBft925_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=82bp
MEAFGGTEGPLPHAEAEPRTQVTSETDVTRALDLARAEFGSTPFVAVNCA
GIGYAKRTISRCVVRLGCSMWYAWRITKKQVA
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mRNA from alignment at Scaffold_491:510266..511195-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft925_7a-0001 ID=EsuBft925_7a-0001|Name=EsuBft925_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=930bp|location=Sequence derived from alignment at Scaffold_491:510266..511195- (Ectocarpus subulatus male Bft15b)
ATGGAGGCGTTTGGAGGTAACCCGTGAAATGCATGTTTTGAGACAGCCCC
TTTCTGCCGCCCTGTGCGAGAATCAACTGCTGTGTCGGTTTTTCGCGATG
CCTTCCGACTGGTCTTGTGTGTGTTTTGCATTTTCTTGTGTTTGTGTCAA
AGTTGGTCAACATCAAATTCTTTGTCTGCCATCCCTCAACGAACAAGTCC
ACGGGAAATACTCCACAGGGACGGAGGGCCCATTGCCCCACGCGGAAGCT
GAGCCACGAACACAAGTACGATCAAACATGTTTCGCCATCACAGCCAAAT
CACACTAACAAGCATTGTCGACATCCGCAGAACGTTTGAAGAAAGTTCTC
TTTAGTCGGTCAATCTACCACAATGTCTACCCGCTCGAAAATGATTTGGC
CACGTGCTGCTATCTAAGGGCATGTACGTTCCTTCACCTTGGGTCAAAAC
AATGTCGACTGGAGATTGTGAGTACACACACTGCCGCTGTGCTGGTTCCT
GGTGGGGTGCGATTGATCAGGTCACCAGCGAGACAGATGTGACTCGAGCG
CTGGACCTTGCGAGAGCCGAGTTCGGATCGACCCCCTTCGTCGCGGTCAA
CTGCGCCGGCATCGGCTACGCCAAACGCACCATCTCAAGGTGTGTTGTGC
GACTTGGTTGTTCCATGTGGTATGCATGGCGCATCACTAAGAAGCAAGTA
GCATGACTCGCTGTACTCTAGAAGTACTACGGGGGCACGAAAACTGTTCC
TCACACGGGATCATGAAGTTTCCTGGTTGAATCGATTTCGCATGCTTCGG
CAGGTTTCATGCCGCCTCAACCTGCACGCGACACGCACTGTCCCCGCAAA
ACGCAAGTGGCTGATCCACTGCCGGTGCCCTGTCTTGTACAACTCCCAGG
TTGCTTGTGTGAGGACAAAAAAACAGTGAT
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Coding sequence (CDS) from alignment at Scaffold_491:510266..511195-

>EsuBft925_7a-0001 ID=EsuBft925_7a-0001|Name=EsuBft925_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=249bp|location=Sequence derived from alignment at Scaffold_491:510266..511195- (Ectocarpus subulatus male Bft15b)
ATGGAGGCGTTTGGAGGGACGGAGGGCCCATTGCCCCACGCGGAAGCTGA
GCCACGAACACAAGTCACCAGCGAGACAGATGTGACTCGAGCGCTGGACC
TTGCGAGAGCCGAGTTCGGATCGACCCCCTTCGTCGCGGTCAACTGCGCC
GGCATCGGCTACGCCAAACGCACCATCTCAAGGTGTGTTGTGCGACTTGG
TTGTTCCATGTGGTATGCATGGCGCATCACTAAGAAGCAAGTAGCATGA
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