EsuBft925_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft925_10a-0001
Unique NameEsuBft925_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_491contigScaffold_491:476935..480404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPQ2
ProteomeIdEsuBft925_10
Protein domainsIPR027417
Protein domainsIPR005225
Protein domainsIPR006687
Protein domainsIPR024156
Protein domainsPTHR11711
Protein domainsIPR003579
Protein domainsIPR006689
Ownerapollo_admin@sb-roscoff.fr
Noteadp-ribosylation factor-related protein 1 os:rattus norvegicus gn:arfrp1 pe:2 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1436
Hectar predicted targeting categoryother localisation
Evalue9.93e-136
EggNOG OGsKOG0076@1|root,KOG0076@2759|Eukaryota
Ec32 ortholog descriptionARFRP1, ARF-like Ras superfamily GTPase
Ec32 orthologEc-18_002040.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameARFRP1
KEGG koko:K07952
GOsGO:0000139,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006892,GO:0006893,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0023052,GO:0031090,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034613,GO:0034976,GO:0042147,GO:0042175,GO:0042886,GO:0043001,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048598,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061951,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0098588,GO:0098791,GO:0098876,GO:1990778
DescriptionGolgi to plasma membrane protein transport
COG categoryS
BRITEko00000,ko04031,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0042175
GO0044430
GO0005525
GO0005802
GO0009653
GO0003924
GO0007264
GO0007275
GO0034067
GO0043001
GO0005929
GO0006184
GO0042147
GO0015630
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft925_10aEsuBft925_10aEctocarpus subulatus male Bft15bgeneScaffold_491 476935..480404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_10a-0001EsuBft925_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_491 477034..479603 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_10a-0001-exonagat-exon-45104Ectocarpus subulatus male Bft15bexonScaffold_491 476935..477036 +
EsuBft925_10a-0001-exonEsuBft925_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_491 477175..477264 +
EsuBft925_10a-0001-exonagat-exon-45108Ectocarpus subulatus male Bft15bexonScaffold_491 477496..477580 +
EsuBft925_10a-0001-exonagat-exon-45106Ectocarpus subulatus male Bft15bexonScaffold_491 477862..477917 +
EsuBft925_10a-0001-exonagat-exon-45107Ectocarpus subulatus male Bft15bexonScaffold_491 478766..478874 +
EsuBft925_10a-0001-exonagat-exon-45102Ectocarpus subulatus male Bft15bexonScaffold_491 479137..479302 +
EsuBft925_10a-0001-exonagat-exon-45103Ectocarpus subulatus male Bft15bexonScaffold_491 479537..479949 +
EsuBft925_10a-0001-exonagat-exon-45105Ectocarpus subulatus male Bft15bexonScaffold_491 479990..480404 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_10a-0001-exonagat-five_prime_utr-15026Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_491 476935..477033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_10a-0001-cdsEsuBft925_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_491 477034..477036 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft925_10a-0001-exonagat-three_prime_utr-23101Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 479604..479949 +
EsuBft925_10a-0001-exonagat-three_prime_utr-23102Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_491 479990..480404 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft925_10a-0001 ID=EsuBft925_10a-0001|Name=EsuBft925_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1436bp|location=Sequence derived from alignment at Scaffold_491:476935..480404+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAGATTGGGCACGTGGTGGAGCGTCACGTGAGTAACACGAAGTGCACAG
CCAGCACGAGCAAGAGGGAGCTGCTGCTCTCAGCGAGGCGCTTTGCTAAA
TGTTCTCGCTCATTGCCGGCTTGATTCGGTACCTGTTTTCCAAGACCGAG
ATCAATGTCCTTATTCTGGGGCTGGACTACGCGGGTAAAACTACATTGTT
GGAGCAGATGAAGGGCATTTTCAAGAAAGTTCAGGGGATACCACCGTCCA
AGATTCCGCCAACAGTGGGATTGAACGTTGGCAAGATGGACGTGGGGGGC
TGCAAGCTAACGTTCTGGGACTTGGGGGGACAGGTACGTGTTCGATCACT
GTGGGAAAAATATTACGCTGACGCGCACGGGTTAATCTTCGTCATGGATT
CTGCTGACGTTGGGAGATTTGAGGAAGCTAGAATGGCGTTCGATACCGTC
AAGGAGCAAGGGGAGCTTCACGGGGTGCCATTGATGATGTTTGCTAACAA
GCAAGACTTGCCTGAGGCTATCTCGACAGCGGACATATCTGTGCAGTTCG
ACATGCACAAGATCACGAAAGTGGCGTTTCGATTACAACCATGCAGCGGG
CTTACATGTGACGGGGTGGCGGAAGGGATTCATTGGATAGTGGATGAGGC
CAAAAAACGAGCGCGACCACGATAGATGCACAGCACGTGGCGACCTGCTT
TGTTTTGTGTTGTTGGCACATTCTTTGTGGTGATGAACTGGCGGGGGCGC
GTGGAGCACGGCAGCGTGGTAGCACAGCATGATCGAGCCGCGTGTCTCTC
CTATCCGCGGGCCCCGGTATCGCCAGTCGTTCCTCCTTTGTGGCAGGGTA
TTTCGACCAATCAGGAAATGCGTGCCAGTGGCCTATTCCTTTGCTGCCCT
CTTGGATTCTGACAAAGGGTAAATAAATATGTATCACTCCCTTCTCTCTC
TGGTGATGCTTCCGGTGCATCTTGGGTCCTCGTGGAAGACACTACTGTGT
GGTACCTGTCATCTAGACCTCTCAAAAAACGCGTAGCTACCATCTGTAGA
GCTCTGCACGAACGGGCGACAAGGAAGCGTGAGCAGAAAACAGAAAAGGG
CATTTGACGTGGTAGATAGCTGTAGGTTCTACGGCCTGGACGACGCGGCC
CTCCTGAGAGCAAGGCATGGGGTGGACACTCGTCACCCGCGAGGTTGGCC
TTTCCCTCGAAGATCCGGGTCTCACGTGACAACCGTGGCCGACTGTCCCG
CAGGCGACGACGTGTCAGGCCGAAGATGCCTGACAGGATGACCGCGGTCA
ACGCCACCCGTCATCCAAGGACCTATTGTTATGTGCAAGAAACTTGCGCC
GCAAGGTTTTTTGACCAATCGGGAAACTGCGTGCCACCTTTCCCTTTCTG
TGTTGCCAGGTTGCTACCAATATGTGTTTTTTGGTT
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protein sequence of EsuBft925_10a-0001

>EsuBft925_10 ID=EsuBft925_10|Name=EsuBft925_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPS
KIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMD
SADVGRFEEARMAFDTVKEQGELHGVPLMMFANKQDLPEAISTADISVQF
DMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRARPR
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mRNA from alignment at Scaffold_491:476935..480404+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft925_10a-0001 ID=EsuBft925_10a-0001|Name=EsuBft925_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3470bp|location=Sequence derived from alignment at Scaffold_491:476935..480404+ (Ectocarpus subulatus male Bft15b)
TCAGATTGGGCACGTGGTGGAGCGTCACGTGAGTAACACGAAGTGCACAG
CCAGCACGAGCAAGAGGGAGCTGCTGCTCTCAGCGAGGCGCTTTGCTAAA
TGGTGAGGTGCGAAGAGCTAGTACGTCTGAGACAAGGATGGCTAGGTGGC
TAGGAATGGTTGCTGTTATTCCGCATTTTTCCTGAACCCGGTTGTTTTTC
TCGCCGCCCTCTTGGTTCTCCGCTTCCCCGCGTCTCCTAGTTCTCGCTCA
TTGCCGGCTTGATTCGGTACCTGTTTTCCAAGACCGAGATCAATGTCCTT
ATTCTGGGGCTGGACTACGCGGGTAAAACTGTGAGTGTCGTGTATCGCTT
GCTTGCATCCCTGAATGTCCATCTTCGTGTGGGTGTTCGCTGGACATAGT
ATTCCGCCGCATCTACTTGTATGTATTCGTACATCTGGTGTTGCTGGTCC
CACCGGTACGTAATGGTGCGAAGGTGGCTTGTAAATAGTTGCTCAAGCAC
TGTACTATGTGCTTTGTGTGTCAGCGGAACTCTCACATCTGCCGTTCGTC
GAAACCGGCAGACATTGTTGGAGCAGATGAAGGGCATTTTCAAGAAAGTT
CAGGGGATACCACCGTCCAAGATTCCGCCAACAGTGGGATTGAACGGTGA
GCCGTGTCGACTGTCGACTGTCGACAAGCAGGCCTTGCATTGATCGCATG
TATGCAACTCGAGAACAGAACCGACTGTGAAAGGTGAAGGCAGTCTTGGA
GAGCCTGCTACTCGCTGATTTCTGCCGGCTTGAAAGAAACGCGCATCTTT
GGTCTAACAAGGTATCCTGTTGGGGCTGTGGTAACATGTGTTTTTCTTCC
TTGGGCGAACCGTGCGTGTACTGGTATCCAACCCAGTTCTTTTCTCATCG
CACGCGTCTCGCGTGTTGAATTGGCAGTTGGCAAGATGGACGTGGGGGGC
TGCAAGCTAACGTTCTGGGACTTGGGGGGACAGGTAAGACTCCGGGTGAT
AAATGCGCGTGGACTCATCTACCTCTCTTCTCGCATCGGTTGACGGGGGG
AGATGGTGAACGTGTGTTTCCAATGGACGATTGAAAGGCTGGAATATTAC
ATATGCGACAGCAATATTAGCATTGTGACCAAGTTGGAGGGAGAAATCAT
TATCACTCACTCAAGGCACGTTAGGGTGCAGCAGAGGCTTGCACGGCGGA
GGTCGTGTCTTGCTGGCGATAGTTATCTCCACGGGACACACGGAACGACA
GTATTGTTATTGCAGAACGCTGCAATTTTAACAGATGTGGCAATAGTCCT
TCGACAACAACGCCAGCCCATGCTCCCTCAAGCTCCCTGCCGTTGCGAAA
CTACCTACTTTTGGTGTTCATGTGGGAGAAAGACGTCGAGTTCTTTAATT
TTGATTTGGGTTCTGTGAGACAGGGATCTCCGGTTTCTGTGCTACTGGCC
CAGTTAGTTCGTGAGGTACAAACCACTCATGAGAGAGGGACGGGGCGAAC
GCTACCAGTCATAATGGAGGTATTAGGGGTTGAGCATGCAGAGTGAAAGC
GCGGGCCAACCTGCCCGCTGTACTTGCAAGCGGGTTCAGCGTGTCCACTT
GCTCTAATCTTTGGCAATACCCACAAGGTAGATCTTATCCGACAGGTAAT
CTGACACGCCAGGTCTAAGATACGTTCGGAGGTGACAATCCCAGTTCTTT
TATAGATTCTTGTTCTTCGTCAACTTGCCTTCGTAACTTTTGGCTGAAGT
CAAGGTCCTTGAAATCGAACAATTATACACGAGTCGCAAACTTTTCACGT
TTGCGTCGCACCTCGCGATCACCTCCTACAGGTACGTGTTCGATCACTGT
GGGAAAAATATTACGCTGACGCGCACGGGTTAATCTTCGTCATGGATTCT
GCTGACGTTGGGAGATTTGAGGAAGCTAGAATGGCGTTCGGTGAGAGCTT
AAAGGCATCCAAACCCTTGGATGGTTGCTCAACGGCATTCAAACCCGTGG
ATGGTTGATTTAGTTGGTAGCTTCGCTGTCCTCGGACCAGCATTTTTATA
TGAGAAACCTAGTGGGCGTCATGCTGGTCATGAAAAGTTAAGTTTTTTGT
GGTTATGTCAGTGTTTCGAAGTCGTAGTCCACTTAATCTGGCCTGTTGGC
GTCCGTTGCTAAGCATGTATATGTTGCGTGGTTGGTGTTGTTCCCATCGC
AGATACCGTCAAGGAGCAAGGGGAGCTTCACGGGGTGCCATTGATGATGT
TTGCTAACAAGCAAGACTTGCCTGAGGCTATCTCGACAGCGGACATATCT
GTGCAGTTCGACATGCACAAGATCACGAAAGTGGCGTTTCGATTACAACC
ATGCAGCGGGCTTACATGGTGAGTACGTCCCCAGCTCACAATGCTTGCGT
CGTTTATGTGCATACAACAACGATATCATCTGAGACTGTGCACCCAAGCA
CAAGAACCAAGGAAGCGTGTATTTGTTGGAAGTACGTGAGTGGAAAGCAT
CAGCATGCATCAAAGGCTCAAAACACCACTCATGACATATCCACCTGATG
TGTTCCTCTTGTCTGCTGTCTCCCCCCCATGCTTCATGCCAACCGCTTCC
AGTGACGGGGTGGCGGAAGGGATTCATTGGATAGTGGATGAGGCCAAAAA
ACGAGCGCGACCACGATAGATGCACAGCACGTGGCGACCTGCTTTGTTTT
GTGTTGTTGGCACATTCTTTGTGGTGATGAACTGGCGGGGGCGCGTGGAG
CACGGCAGCGTGGTAGCACAGCATGATCGAGCCGCGTGTCTCTCCTATCC
GCGGGCCCCGGTATCGCCAGTCGTTCCTCCTTTGTGGCAGGGTATTTCGA
CCAATCAGGAAATGCGTGCCAGTGGCCTATTCCTTTGCTGCCCTCTTGGA
TTCTGACAAAGGGTAAATAAATATGTATCACTCCCTTCTCTCTCTGGTGA
TGCTTCCGGTGCATCTTGGGTCCTCGTGGAAGACACTACTGTGTGGTACC
TGTCATCTAGACCTCGTCACCGCCAGTCAAAAAACGCGTAGCTATCATCC
GCCAGTCAAAAAACGCGTAGCTACCATCTGTAGAGCTCTGCACGAACGGG
CGACAAGGAAGCGTGAGCAGAAAACAGAAAAGGGCATTTGACGTGGTAGA
TAGCTGTAGGTTCTACGGCCTGGACGACGCGGCCCTCCTGAGAGCAAGGC
ATGGGGTGGACACTCGTCACCCGCGAGGTTGGCCTTTCCCTCGAAGATCC
GGGTCTCACGTGACAACCGTGGCCGACTGTCCCGCAGGCGACGACGTGTC
AGGCCGAAGATGCCTGACAGGATGACCGCGGTCAACGCCACCCGTCATCC
AAGGACCTATTGTTATGTGCAAGAAACTTGCGCCGCAAGGTTTTTTGACC
AATCGGGAAACTGCGTGCCACCTTTCCCTTTCTGTGTTGCCAGGTTGCTA
CCAATATGTGTTTTTTGGTT
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Coding sequence (CDS) from alignment at Scaffold_491:476935..480404+

>EsuBft925_10a-0001 ID=EsuBft925_10a-0001|Name=EsuBft925_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_491:476935..480404+ (Ectocarpus subulatus male Bft15b)
ATGTTCTCGCTCATTGCCGGCTTGATTCGGTACCTGTTTTCCAAGACCGA
GATCAATGTCCTTATTCTGGGGCTGGACTACGCGGGTAAAACTACATTGT
TGGAGCAGATGAAGGGCATTTTCAAGAAAGTTCAGGGGATACCACCGTCC
AAGATTCCGCCAACAGTGGGATTGAACGTTGGCAAGATGGACGTGGGGGG
CTGCAAGCTAACGTTCTGGGACTTGGGGGGACAGGTACGTGTTCGATCAC
TGTGGGAAAAATATTACGCTGACGCGCACGGGTTAATCTTCGTCATGGAT
TCTGCTGACGTTGGGAGATTTGAGGAAGCTAGAATGGCGTTCGATACCGT
CAAGGAGCAAGGGGAGCTTCACGGGGTGCCATTGATGATGTTTGCTAACA
AGCAAGACTTGCCTGAGGCTATCTCGACAGCGGACATATCTGTGCAGTTC
GACATGCACAAGATCACGAAAGTGGCGTTTCGATTACAACCATGCAGCGG
GCTTACATGTGACGGGGTGGCGGAAGGGATTCATTGGATAGTGGATGAGG
CCAAAAAACGAGCGCGACCACGATAG
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