EsuBft920_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft920_10a-0001
Unique NameEsuBft920_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:564624..565260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft920_10
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length39
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft920_10aEsuBft920_10aEctocarpus subulatus male Bft15bgeneScaffold_91 564624..565260 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_10a-0001-exonEsuBft920_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 564624..564730 +
EsuBft920_10a-0001-exonagat-exon-48741Ectocarpus subulatus male Bft15bexonScaffold_91 564975..565260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_10a-0001-cdsEsuBft920_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 564624..564730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_10a-0001EsuBft920_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 564624..565260 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft920_10a-0001 ID=EsuBft920_10a-0001|Name=EsuBft920_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=393bp|location=Sequence derived from alignment at Scaffold_91:564624..565260+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACATTAGCATGAAGTTCAATACTCCCGTTATTCACGTGGTACA
GCTAACCGAGCCTGTGGACGAACGCAGCTCTCTTGAAGACATGATCACCC
TTCTCAACGTGACCGTACCGTTTGATGACGACGCGAGCACAGCTACTAAC
GACGAAGACGTAGCTGACGACGCCGATGAGGGTGTAGCTGACGACTACGC
GGATGTAGTTGCAGGCGACGACGTGGACAGAGCGGACGACGACGGAGAAG
GCACAGCTGACGATGACGCGGGCGTAGCTGCCGACACTGGAGTGGCTTTC
CGTGTCGGCAGATCCTCCCCAGGCGTCGTGCTCACGGCTGTTCGCGGGAT
CGCTTTCTTGATTGTAGCTCCGTTTCTGGCGGCCTTCGTGTGA
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protein sequence of EsuBft920_10a-0001

>EsuBft920_10 ID=EsuBft920_10|Name=EsuBft920_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=130bp
MEHISMKFNTPVIHVVQLTEPVDERSSLEDMITLLNVTVPFDDDASTATN
DEDVADDADEGVADDYADVVAGDDVDRADDDGEGTADDDAGVAADTGVAF
RVGRSSPGVVLTAVRGIAFLIVAPFLAAFV
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mRNA from alignment at Scaffold_91:564624..565260+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft920_10a-0001 ID=EsuBft920_10a-0001|Name=EsuBft920_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=637bp|location=Sequence derived from alignment at Scaffold_91:564624..565260+ (Ectocarpus subulatus male Bft15b)
ATGGAGCACATTAGCATGAAGTTCAATACTCCCGTTATTCACGTGGTACA
GCTAACCGAGCCTGTGGACGAACGCAGCTCTCTTGAAGACATGATCACCC
TTCTCAAGTATGACCTCCGCATCAGCTTTCAGCTTCTCTGCAAACATATC
AGCGAGCATGCCATTCGTTACGACTAGAGTCTCAGCGGCACCTTCTGCCA
GCGCCCCCGACCTAAGCCACCATCACCCTATGCCACTGAAACTTACAGCC
CATCAACCCACACTCTACCCTTCGCCGTTCAGGTAGCTGCGAAGCGACGG
GGGTTTTACACCGAAGTAGAAAAAAAACACCTTGACGTGCAACGAGGGTA
GCGTGACCGTACCGTTTGATGACGACGCGAGCACAGCTACTAACGACGAA
GACGTAGCTGACGACGCCGATGAGGGTGTAGCTGACGACTACGCGGATGT
AGTTGCAGGCGACGACGTGGACAGAGCGGACGACGACGGAGAAGGCACAG
CTGACGATGACGCGGGCGTAGCTGCCGACACTGGAGTGGCTTTCCGTGTC
GGCAGATCCTCCCCAGGCGTCGTGCTCACGGCTGTTCGCGGGATCGCTTT
CTTGATTGTAGCTCCGTTTCTGGCGGCCTTCGTGTGA
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Coding sequence (CDS) from alignment at Scaffold_91:564624..565260+

>EsuBft920_10a-0001 ID=EsuBft920_10a-0001|Name=EsuBft920_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=393bp|location=Sequence derived from alignment at Scaffold_91:564624..565260+ (Ectocarpus subulatus male Bft15b)
ATGGAGCACATTAGCATGAAGTTCAATACTCCCGTTATTCACGTGGTACA
GCTAACCGAGCCTGTGGACGAACGCAGCTCTCTTGAAGACATGATCACCC
TTCTCAACGTGACCGTACCGTTTGATGACGACGCGAGCACAGCTACTAAC
GACGAAGACGTAGCTGACGACGCCGATGAGGGTGTAGCTGACGACTACGC
GGATGTAGTTGCAGGCGACGACGTGGACAGAGCGGACGACGACGGAGAAG
GCACAGCTGACGATGACGCGGGCGTAGCTGCCGACACTGGAGTGGCTTTC
CGTGTCGGCAGATCCTCCCCAGGCGTCGTGCTCACGGCTGTTCGCGGGAT
CGCTTTCTTGATTGTAGCTCCGTTTCTGGCGGCCTTCGTGTGA
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