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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FK60 |
| ProteomeId | EsuBft913_4 |
| Protein domains | PTHR24015 |
| Protein domains | IPR011990 |
| Protein domains | IPR002885 |
| Protein domains | SignalP-TM |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | pentatricopeptide repeat-containing protein at5g02860 os:arabidopsis thaliana gn:at5g02860 pe:2 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2880.D7FK60|- |
| Length | 2642 |
| Hectar predicted targeting category | mitochondrion |
| Evalue | 6.3e-208 |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-04_005710.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | endonuclease activity |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0031227 |
| GO | 0016070 |
| GO | 0009657 |
| GO | 0044699 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft913_4a-0001 ID=EsuBft913_4a-0001|Name=EsuBft913_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2642bp|location=Sequence derived from alignment at Scaffold_499:1018735..1022738+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCCGTGGCGGCTGCTGATGCTGCTGTGAGCTTTGAGGTAACAAGAGGAAG AACAATGATCCGTACACATGTCAGGGTATTTCAGAGTCGATGTTGCTCGA GAGGCGCAACTGCTTCCCAGCTGATCGCCGCACAAAGGGAACCGAGAACA ACAACAACACGCGCGGCGCCGCGCACCATAGCAGTAGACACATTACCAAC CAGGGGTATCAGCACCGCTCCCCGTTCTCTCGAGAGCGAGACGGTAGCCA GGGCTGCAGCATCGACGGCGATAAGACCGCGTGGGCCGCTCTCTCCTCCT CGCCGGTTGCTTCGGAATCGGCCTGCGGAGGACGGCAAGCGCTTCGTGCG CGAGGCGCAGCGGCTGGGGGGCCAGGGGAAGTGGGGACGAGTCATGTCCC TGCTGAGACAGGCGGAGGGAGACGGCGCCGTCGTGAACCACATTATGTAC AACGCCGCGATCGGCGCCCTCTCCAAGAGCGGGCGGTGGAGGGAGGCGAC GTCGCTCTTGGAATCGATGCCGGAAAAGGGCGTCGCTCCAGACGTTGTGA GCTACGGGGCGGCGATGGAGGCGTGTCGGGCGGCGCGCGGAGGAAGGCCC GACGAGGCCTACGGCATCCTCTCGCGGATGACGGCGTGGACTGGAGGCAA GAGCGTCAAGCCAAACAGACGCTGCTTCAACATCGTCCTCGCGGCCTTCG CGAAGAGTGGCAGGTCTCGGCGGGCGCTCTCCCTGGTGGAGGTGGACATG GTGAACGCCAGTGTTGAGCCGGACCTCCGCACGTGGTCGACCTTGATCGA CGCCTACCGAGCGGCCGGCGAGAGCGGCCGCGACGCCGCCGAGCTGTTGG GGAGGATGCGCGAGGCCGGGGTCGAGCCGGACGTGTGGTGCTTCAACAAC TGCCTGAACGCCGCGAGCCGGCGGGGCGAGTGGGAACTCGCGTTCGGCCT CCTGGAGGACATGGGCGAGGCGGGCGTGGAGCCCAACTGCTGGAGCTACT CCGCGGCGATGAAGGCGTGCGTCAACGCGGAAGAGTGGACGCTGGTACCG GCGCTGCTGCGCGCCATGAGGGAGGCCGGGAGCACCGCTCCGCCGAATGT GTGGAACTTCAACATCTGCCTCGACGCCTACGGAAAGTCCGGGGAGTGGG AGAAGGCCGTGAGCCTCTTGCGGAAGGACATGCCGGCGGCGGGGGTCGCA CCCGACGTCGCCAGCTACGCGTCCGCGATCGACGCAGCTGGGAAGGCCGG GGAGTGGGACACCGCGCTCGCCCTGTGGGACGAGGCCCGGGCGGCCCTGC CGCCGTCCGCCCTCAACTCCCATGCCTACAGCATCGCCATCGGCGTCTGC GGGAAGGCCGGCCTGGTGGACCGGGCCCTGTCGCTGCTATCGGAGTGGCG GGCGGCGCCTGGTCTCCCGCCCGACCTACGCCCCTTCAACGCGGCCATCG ATGCCTGCGCGAGGGCCGGGCGCTGGGAGCGGGCGCTGTCCCTCCTGCGG GAAATGGAAGAGGCCGGCCTCGAGCCGGACGTAGTTTCGTTCACCTCAGC GATCGCGGCGTTCAGGGGCGGGAAGGCGGCGGCGGCGGCGGCGGGGGCGG GGGAGCGGGAGCTGGGCCTGGCGCTGGGGCTGTTGGAGGAGATGAAGTCA CGGGGCCTACCCCCGACGAGCTTCTCCCACTCGGCCGCGATCAAGCTCTG CACGGACGCCAACCGGCACGAGCGGGCGCTGGGGCTGTTCGAGGAGCTCA AGGCCTCGGGCCAGGCGGCCGACGAGCCGGCGTTCACGGCCATCATCGAC AGCTGCGCCCGCCACAGCGGTAGTAGTAACGGCGGCGGGGAAGGTCGGTG GGAGACAGCGGTAGGTCTCCTCGATGAGATGGAGGCGTCGGGCGTGGCGC CGAGCGTGGCCGCGTTCAACGGGGCCATTCGGGCCTGCTGCAACGGCGGG CAGTGGCACTTGGGGAGCTCCTTGCTGAGGAGGATGGCGGCGGTCGACGG TGTGGACCCCAACGTGTCCAGCATGAACGCCCTCATTAGGGGCTTGAGTT GAGGCCAAACAGGTTAAGCCTCTCGTTGCAGTTTGTACTCGTCAGGGCAG CGGGCTGCATCCTCCTCTCCCCGAGCTTGTAGTATATGGCAGTGCCGCTT GTTGTTTGATAGGCACCTCCACATGGATTCATGGGGGCGGTTTCAGTTCG TCGTCGGGAAACAGCGGAAGTCGGAGTCAGTTTGTAGCTTGTGTTGCCAC GCCAAGGTCCATCACTCTTAGGGTTTCGAATGTAGCTTCGCTCCCTGTAC ATAGTGTGCACACCATCATCGCTAACGCGATTGATTGGTGTCGACGATAG CACATTTTTCTAGGAGGTATTGGAAACGACGAATATTGGAGGGGGGCGGA TCGGCAAATGGTGAGCACGCGAAACATATACGGCTAGTGGCTTGGTGGCT TTTGAGACTTGTTGTGCCATGTGTGTTGAAAGTTTATGCAGAAACATGTA CAGCATGTTGTTCCGTGTGGTGTTGGGGAGAGCAGTGACGTTGAAAATGT GACGAAACAACAGAGCCTTGTATGCATATGCTGGTGCAAAATTCCCCGCT TGTGAATACTGGGGAGTCCTATACAGAGGTTCATGGTGACCG back to topprotein sequence of EsuBft913_4a-0001 >EsuBft913_4 ID=EsuBft913_4|Name=EsuBft913_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=665bp
MIRTHVRVFQSRCCSRGATASQLIAAQREPRTTTTRAAPRTIAVDTLPTR GISTAPRSLESETVARAAASTAIRPRGPLSPPRRLLRNRPAEDGKRFVRE AQRLGGQGKWGRVMSLLRQAEGDGAVVNHIMYNAAIGALSKSGRWREATS LLESMPEKGVAPDVVSYGAAMEACRAARGGRPDEAYGILSRMTAWTGGKS VKPNRRCFNIVLAAFAKSGRSRRALSLVEVDMVNASVEPDLRTWSTLIDA YRAAGESGRDAAELLGRMREAGVEPDVWCFNNCLNAASRRGEWELAFGLL EDMGEAGVEPNCWSYSAAMKACVNAEEWTLVPALLRAMREAGSTAPPNVW NFNICLDAYGKSGEWEKAVSLLRKDMPAAGVAPDVASYASAIDAAGKAGE WDTALALWDEARAALPPSALNSHAYSIAIGVCGKAGLVDRALSLLSEWRA APGLPPDLRPFNAAIDACARAGRWERALSLLREMEEAGLEPDVVSFTSAI AAFRGGKAAAAAAGAGERELGLALGLLEEMKSRGLPPTSFSHSAAIKLCT DANRHERALGLFEELKASGQAADEPAFTAIIDSCARHSGSSNGGGEGRWE TAVGLLDEMEASGVAPSVAAFNGAIRACCNGGQWHLGSSLLRRMAAVDGV DPNVSSMNALIRGLS back to topmRNA from alignment at Scaffold_499:1018735..1022738+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft913_4a-0001 ID=EsuBft913_4a-0001|Name=EsuBft913_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4004bp|location=Sequence derived from alignment at Scaffold_499:1018735..1022738+ (Ectocarpus subulatus male Bft15b) GCCGTGGCGGCTGCTGATGCTGCTGTGAGCTTTGAGGTAACAAGAGGAAG
AACAATGATCCGTACACATGTCAGGGTATTTCAGAGTCGATGTTGCTCGA
GAGGCGCAACTGCTTCCCAGCTGATCGCCGCACAAAGGGAACCGAGAACA
ACAACAACACGCGCGGCGCCGCGCACCATAGCAGTAGACACATTACCAAC
CAGGGGTATCAGCACCGCTCCCCGTTCTCTCGAGAGCGAGACGGTAGCCA
GGGCTGCAGCATCGACGGCGATAAGACCGCGTGGGCCGCTCTCTCCTCCT
CGCCGGTTGCTTCGGAATCGGCCTGCGGAGGACGGCAAGCGCTTCGTGCG
CGAGGCGCAGCGGCTGGGGGGCCAGGGGAAGTGGGGACGAGTCATGTCCC
TGCTGAGACAGGCGGAGGGAGACGGCGCCGTCGTGAACCACATTATGTAC
AACGCCGCGATCGGCGCCCTCTCCAAGAGCGGGCGGTGGAGGGAGGCGAC
GTCGCTCTTGGAATCGATGCCGGAAAAGGGCGTCGCTCCAGACGTTGTGA
GCTACGGGGCGGCGATGGAGGCGTGTCGGGCGGCGCGCGGAGGAAGGCCC
GACGAGGCCTACGGCATCCTCTCGCGGATGACGGCGTGGACTGGAGGCAA
GAGCGTCAAGCCAAACAGACGCTGCTTCAACATCGTCCTCGCGGCCTTCG
CGAAGAGTGGCAGGTCTCGGCGGGCGCTCTCCCTGGTGGAGGTGGACATG
GTGAACGCCAGTGTTGAGCCGGACCTCCGCACGTGGTCGACCTTGATCGA
CGCCTACCGAGCGGCCGGCGAGAGCGGCCGCGACGCCGCCGAGCTGTTGG
GGAGGATGCGCGAGGCCGGGGTCGAGCCGGACGTGTGGTGCTTCAACAAC
TGCCTGAACGCCGCGAGCCGGCGGGGCGAGTGGGAACTCGCGTTCGGCCT
CCTGGAGGACATGGGCGAGGCGGGCGTGGAGCCCAACTGCTGGAGCTACT
CCGCGGCGATGAAGGCGTGCGTCAACGCGGAAGAGTGGACGCTGGTACCG
GTAAGTCTGATCGAGTTCCGGGCATGCATGCTACTACCGCCGTGCGTATC
TTTCTTACTAGCATCGACCGCGCTAAACGGCTGACCAATGAAACACGCCA
GTCTCAGCGCCGTGGAAAACACAAATTGCTCCTGTAAGCCTCAATCTGAG
ACCGAGCGTCATGCAGGAGTCTACTCTATTCTCTAGATGAAAGACAGGGA
CGGTAGCAACAGAAGAAAACTGCACATGTCTACCCAGGCCTTTACCTTGC
ACTCGAGCTCGTTTTGGAGTGCTTTCACAAGCCTAGATCTACCCTGCTTA
CTGTTTTTTCAACGTGTGGTGGTCTTGGCACAGGCACAAATCGGTTAAAT
TGTAGCCACCGCAAACCATCTGGCCCACGTAGAATTCTGCACGCGAAATT
TTGACGTTGAGTTTGCCTTTCTTCGCCTCAAGGCCTCTTAGAGAAGTAGG
ATTCGGAGGCGGTTCACCTTCGAGCTGCCGTGTGTCTGTGTGTGTGGTTT
GTTCCTCAGACAAGCCCCGCCTGTTACTCTCGGACAAGATACACCCCACC
ACCGTCAGGGGTTCAAATACCATATGCTTGCTTGTAGGCCTGTCCTCCAT
CGGCCGTTTTGCTTGTATGATGGAGAATAAGAAGGTGGAATTACTTGAAA
TTAGTATAGAAATAAAGTTTGTGTATCTAAATTGAAAATAAAACGGCCGA
TGGAGGACAGGCCTACTTGCTTGGGTTAGCGTGGGTTCTTACCTCCTCCT
TGCGTTGTGCCACGCGGTGAATCCCGTTAGCAACCGGGCCATGAGACTGT
GCGCTGTTGAGCGTAAGCAGAGGCAACGTCGGAAGGACGACGACTGCTGC
GAGTGCTGTAGCTGCTAAAGCGTAAGCAGAGGCAACGCTGGAAGAACGAC
GACAACTGCTGCGAGTACTGTAGCTGGCGAAGTAAGGGCCGCCATGTTGA
GTCATCTAGCAAACCGAACTAACCAGGCCAGGGAGTTTGTACTCGAGTCA
CTTTGGAAGACGAATCGAGCCGTCTCCCTGGGCCAGCGTGCATGGTGCGC
CAGACGATTCGAGACCGTCGCCCCAACTGCTCTCAGCACGACCTTTTCTT
CCAAAGCCCAGCGGCATGACATCGCGACACGCACGAAAGTCTCCCAGAGC
TTCCTTTGTTGTGTGTATTTTCTGGCATGCGTGAAACCTTAATAACAACC
GCCGTGCTGAGTGCCCCGATACGAGAGGGGCCCTCACCAGTCAAAACAAG
CGATTTAGCTATCTAGTCCCGGGGGCGGGGGCGGGGGGGCGATCTTGACC
AACCGCGATGTTTGGTCTCACGGCATGCTGCTGCTTTTTCTTTGCTCTGA
TATTTACAACAGGCGCTGCTGCGCGCCATGAGGGAGGCCGGGAGCACCGC
TCCGCCGAATGTGTGGAACTTCAACATCTGCCTCGACGCCTACGGAAAGT
CCGGGGAGTGGGAGAAGGCCGTGAGCCTCTTGCGGAAGGACATGCCGGCG
GCGGGGGTCGCACCCGACGTCGCCAGCTACGCGTCCGCGATCGACGCAGC
TGGGAAGGCCGGGGAGTGGGACACCGCGCTCGCCCTGTGGGACGAGGCCC
GGGCGGCCCTGCCGCCGTCCGCCCTCAACTCCCATGCCTACAGCATCGCC
ATCGGCGTCTGCGGGAAGGCCGGCCTGGTGGACCGGGCCCTGTCGCTGCT
ATCGGAGTGGCGGGCGGCGCCTGGTCTCCCGCCCGACCTACGCCCCTTCA
ACGCGGCCATCGATGCCTGCGCGAGGGCCGGGCGCTGGGAGCGGGCGCTG
TCCCTCCTGCGGGAAATGGAAGAGGCCGGCCTCGAGCCGGACGTAGTTTC
GTTCACCTCAGCGATCGCGGCGTTCAGGGGCGGGAAGGCGGCGGCGGCGG
CGGCGGGGGCGGGGGAGCGGGAGCTGGGCCTGGCGCTGGGGCTGTTGGAG
GAGATGAAGTCACGGGGCCTACCCCCGACGAGCTTCTCCCACTCGGCCGC
GATCAAGCTCTGCACGGACGCCAACCGGCACGAGCGGGCGCTGGGGCTGT
TCGAGGAGCTCAAGGCCTCGGGCCAGGCGGCCGACGAGCCGGCGTTCACG
GCCATCATCGACAGCTGCGCCCGCCACAGCGGTAGTAGTAACGGCGGCGG
GGAAGGTCGGTGGGAGACAGCGGTAGGTCTCCTCGATGAGATGGAGGCGT
CGGGCGTGGCGCCGAGCGTGGCCGCGTTCAACGGGGCCATTCGGGCCTGC
TGCAACGGCGGGCAGTGGCACTTGGGGAGCTCCTTGCTGAGGAGGATGGC
GGCGGTCGACGGTGTGGACCCCAACGTGTCCAGCATGAACGCCCTCATTA
GGGGCTTGAGTTGAGGCCAAACAGGTTAAGCCTCTCGTTGCAGTTTGTAC
TCGTCAGGGCAGCGGGCTGCATCCTCCTCTCCCCGAGCTTGTAGTATATG
GCAGTGCCGCTTGTTGTTTGATAGGCACCTCCACATGGATTCATGGGGGC
GGTTTCAGTTCGTCGTCGGGAAACAGCGGAAGTCGGAGTCAGTTTGTAGC
TTGTGTTGCCACGCCAAGGTCCATCACTCTTAGGGTTTCGAATGTAGCTT
CGCTCCCTGTACATAGTGTGCACACCATCATCGCTAACGCGATTGATTGG
TGTCGACGATAGCACATTTTTCTAGGAGGTATTGGAAACGACGAATATTG
GAGGGGGGCGGATCGGCAAATGGTGAGCACGCGAAACATATACGGCTAGT
GGCTTGGTGGCTTTTGAGACTTGTTGTGCCATGTGTGTTGAAAGTTTATG
CAGAAACATGTACAGCATGTTGTTCCGTGTGGTGTTGGGGAGAGCAGTGA
CGTTGAAAATGTGACGAAACAACAGAGCCTTGTATGCATATGCTGGTGCA
AAATTCCCCGCTTGTGAATACTGGGGAGTCCTATACAGAGGTTCATGGTG
ACCG back to topCoding sequence (CDS) from alignment at Scaffold_499:1018735..1022738+ >EsuBft913_4a-0001 ID=EsuBft913_4a-0001|Name=EsuBft913_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1998bp|location=Sequence derived from alignment at Scaffold_499:1018735..1022738+ (Ectocarpus subulatus male Bft15b) ATGATCCGTACACATGTCAGGGTATTTCAGAGTCGATGTTGCTCGAGAGG CGCAACTGCTTCCCAGCTGATCGCCGCACAAAGGGAACCGAGAACAACAA CAACACGCGCGGCGCCGCGCACCATAGCAGTAGACACATTACCAACCAGG GGTATCAGCACCGCTCCCCGTTCTCTCGAGAGCGAGACGGTAGCCAGGGC TGCAGCATCGACGGCGATAAGACCGCGTGGGCCGCTCTCTCCTCCTCGCC GGTTGCTTCGGAATCGGCCTGCGGAGGACGGCAAGCGCTTCGTGCGCGAG GCGCAGCGGCTGGGGGGCCAGGGGAAGTGGGGACGAGTCATGTCCCTGCT GAGACAGGCGGAGGGAGACGGCGCCGTCGTGAACCACATTATGTACAACG CCGCGATCGGCGCCCTCTCCAAGAGCGGGCGGTGGAGGGAGGCGACGTCG CTCTTGGAATCGATGCCGGAAAAGGGCGTCGCTCCAGACGTTGTGAGCTA CGGGGCGGCGATGGAGGCGTGTCGGGCGGCGCGCGGAGGAAGGCCCGACG AGGCCTACGGCATCCTCTCGCGGATGACGGCGTGGACTGGAGGCAAGAGC GTCAAGCCAAACAGACGCTGCTTCAACATCGTCCTCGCGGCCTTCGCGAA GAGTGGCAGGTCTCGGCGGGCGCTCTCCCTGGTGGAGGTGGACATGGTGA ACGCCAGTGTTGAGCCGGACCTCCGCACGTGGTCGACCTTGATCGACGCC TACCGAGCGGCCGGCGAGAGCGGCCGCGACGCCGCCGAGCTGTTGGGGAG GATGCGCGAGGCCGGGGTCGAGCCGGACGTGTGGTGCTTCAACAACTGCC TGAACGCCGCGAGCCGGCGGGGCGAGTGGGAACTCGCGTTCGGCCTCCTG GAGGACATGGGCGAGGCGGGCGTGGAGCCCAACTGCTGGAGCTACTCCGC GGCGATGAAGGCGTGCGTCAACGCGGAAGAGTGGACGCTGGTACCGGCGC TGCTGCGCGCCATGAGGGAGGCCGGGAGCACCGCTCCGCCGAATGTGTGG AACTTCAACATCTGCCTCGACGCCTACGGAAAGTCCGGGGAGTGGGAGAA GGCCGTGAGCCTCTTGCGGAAGGACATGCCGGCGGCGGGGGTCGCACCCG ACGTCGCCAGCTACGCGTCCGCGATCGACGCAGCTGGGAAGGCCGGGGAG TGGGACACCGCGCTCGCCCTGTGGGACGAGGCCCGGGCGGCCCTGCCGCC GTCCGCCCTCAACTCCCATGCCTACAGCATCGCCATCGGCGTCTGCGGGA AGGCCGGCCTGGTGGACCGGGCCCTGTCGCTGCTATCGGAGTGGCGGGCG GCGCCTGGTCTCCCGCCCGACCTACGCCCCTTCAACGCGGCCATCGATGC CTGCGCGAGGGCCGGGCGCTGGGAGCGGGCGCTGTCCCTCCTGCGGGAAA TGGAAGAGGCCGGCCTCGAGCCGGACGTAGTTTCGTTCACCTCAGCGATC GCGGCGTTCAGGGGCGGGAAGGCGGCGGCGGCGGCGGCGGGGGCGGGGGA GCGGGAGCTGGGCCTGGCGCTGGGGCTGTTGGAGGAGATGAAGTCACGGG GCCTACCCCCGACGAGCTTCTCCCACTCGGCCGCGATCAAGCTCTGCACG GACGCCAACCGGCACGAGCGGGCGCTGGGGCTGTTCGAGGAGCTCAAGGC CTCGGGCCAGGCGGCCGACGAGCCGGCGTTCACGGCCATCATCGACAGCT GCGCCCGCCACAGCGGTAGTAGTAACGGCGGCGGGGAAGGTCGGTGGGAG ACAGCGGTAGGTCTCCTCGATGAGATGGAGGCGTCGGGCGTGGCGCCGAG CGTGGCCGCGTTCAACGGGGCCATTCGGGCCTGCTGCAACGGCGGGCAGT GGCACTTGGGGAGCTCCTTGCTGAGGAGGATGGCGGCGGTCGACGGTGTG GACCCCAACGTGTCCAGCATGAACGCCCTCATTAGGGGCTTGAGTTGA back to top
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