EsuBft864_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft864_3a-0001
Unique NameEsuBft864_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:47252..51499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRP1
ProteomeIdEsuBft864_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR011685
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length156
Hectar predicted targeting categorysignal peptide
Evalue8.63e-309
EggNOG OGs2C4QK@1|root,2SCXU@2759|Eukaryota
Ec32 ortholog descriptionLETM1-like
Ec32 orthologEc-12_000520.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft864_3aEsuBft864_3aEctocarpus subulatus male Bft15bgeneScaffold_340 47252..51499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_3a-0001EsuBft864_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 47308..51446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_3a-0001-exonagat-exon-99489Ectocarpus subulatus male Bft15bexonScaffold_340 47252..47911 -
EsuBft864_3a-0001-exonagat-exon-99487Ectocarpus subulatus male Bft15bexonScaffold_340 48426..48611 -
EsuBft864_3a-0001-exonagat-exon-99491Ectocarpus subulatus male Bft15bexonScaffold_340 49039..49175 -
EsuBft864_3a-0001-exonEsuBft864_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 49476..49559 -
EsuBft864_3a-0001-exonagat-exon-99488Ectocarpus subulatus male Bft15bexonScaffold_340 50146..50248 -
EsuBft864_3a-0001-exonagat-exon-99490Ectocarpus subulatus male Bft15bexonScaffold_340 51109..51499 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_3a-0001-exonagat-three_prime_utr-22386Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 47252..47307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_3a-0001-cdsEsuBft864_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 47308..47911 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_3a-0001-exonagat-five_prime_utr-14497Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 51447..51499 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft864_3a-0001 ID=EsuBft864_3a-0001|Name=EsuBft864_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1561bp|location=Sequence derived from alignment at Scaffold_340:47252..51499- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGTGTGCGTGAGCTGCCACACAGATCTCACAGGGGAAACGGGGGAGC
ATCATGCGTCTGAGTGAGTTTCTTTCGGTGTTGAATCTTGCTGCAGTTGC
ACAAGGCGGCCGTGGGACGGTTGGATGGGGTTCAAAATCAGCGGCTGTTA
TGAGCGATCGACGCGTGTTCAATGACCGGCATCGCCAGCACCAGTCTCGC
AGCGCTGTTGCCTTCTTTGGACGCCGTCCTAGGACTACCACACCGAGAGT
GACTGGGAGCTCGGAGGCGGAATCAGCTGTCGACGCACTATCCGATGCAT
CAGGAGCAGGTGTCAAGGTAGTACGCGGTTTGCCGACAGCAGCGGACACT
TCAGCTGCTGATTCTGCAGGCGATTCAGCCGCAGCCCCAAGAGTGAGCGC
CGCGCAGGGGATTGTCAACACATTCCGAGACTTTTGGGGTCACGCAAGAG
ACGGGACGTTTGCCTTGTGGGGGAATTTCAAGGCAAGAAGACATACTAGC
CAAGATATCAGGAAGCGGGTGAAGGCTGGGCATGTAATGACCTATGCGGA
GCACGCACACCTGGAGCGTGGCGCTATTGACCGCAGAAAACTGCTGCAGT
ACCTTATCGCCTACGCGGTATCGCCGAAGAACTTCGTGTACGTTGTCTGG
TACGTCCCGGGGCTCCTTCCCTCGACGTTCGTGAAACCTCATACCGTCCG
CTCCAAATACCACAGACTCGCCCTCGAGCGTGCGTCGGCCACGTGGGATG
CTGTCACGGGGCTGGAGTTCCGGCTCCTGAAAGCGGAGGAGGGGTTCAAG
GGAAAGCGTAGAGAAGAGGGGTCACGCCAGTCCAAGAAAATGGAGAAGCT
GGAAAGGCAGAGAGAAATGGTGCTCGATGTGCTCGAGGCCGAGAGCAAGA
GGCAAGTATTCGAACGGTTCCAGGACCACATGGTAGTCCCTGCCCCCGCC
TCTCCAGACCCAGAGAATGCCGCCGCAAGCAACAACAAGATCACCAAGAA
GAGCAAGAAGCCAAAGTCCCAGAAGCTCAAGCTTCCCTCGGCTAGCAAGG
GGGTCCCTAACACGTACATCAAGGCGCTCGGCAAGGGCACGGGGCTGTCG
GGGTGGTGGCACATCTCGCCTGGGTTCTACGTGCGGTACTGCCTCAGCGA
GAGGTTGAGAGACCTGGGCAGGATGGACGATGTCCTGAGAACAGTCTCGC
TGGAATCGCTCAGCGACAGTGATCTGAGAGAGGCCTGCGACGCTAGGGCT
ATCAACGTGGGGAACCGGCTCGGGGGGGACCGTGAACCGCAAGACCTGCG
GAAGTCGCTCGGGGAGTGGCTTGACCTTACCTCGCCTGAGGTCGCCGCTG
GGAGCAAGCTTGGCCCTGACACGGTCTTCCTGCCGGATCGAGCTAGGTTG
TTGGGTCTGGGGCTCAACTGTTTGGAGAGCGCGCGGCAAGGGAGGACGGC
AGAGTTGCCGAGAAAGGCGCTCGCAGTCGTTGGAAAGGGGGGTGCGATTC
CATGAAGCCTTTGCCTCGTAGCCTGTTATTCTGAACAGGTTCCTAGTTCT
TGCGTCATTAT
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protein sequence of EsuBft864_3a-0001

>EsuBft864_3 ID=EsuBft864_3|Name=EsuBft864_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=483bp
MRLSEFLSVLNLAAVAQGGRGTVGWGSKSAAVMSDRRVFNDRHRQHQSRS
AVAFFGRRPRTTTPRVTGSSEAESAVDALSDASGAGVKVVRGLPTAADTS
AADSAGDSAAAPRVSAAQGIVNTFRDFWGHARDGTFALWGNFKARRHTSQ
DIRKRVKAGHVMTYAEHAHLERGAIDRRKLLQYLIAYAVSPKNFVYVVWY
VPGLLPSTFVKPHTVRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKG
KRREEGSRQSKKMEKLERQREMVLDVLEAESKRQVFERFQDHMVVPAPAS
PDPENAAASNNKITKKSKKPKSQKLKLPSASKGVPNTYIKALGKGTGLSG
WWHISPGFYVRYCLSERLRDLGRMDDVLRTVSLESLSDSDLREACDARAI
NVGNRLGGDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLL
GLGLNCLESARQGRTAELPRKALAVVGKGGAIP
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mRNA from alignment at Scaffold_340:47252..51499-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft864_3a-0001 ID=EsuBft864_3a-0001|Name=EsuBft864_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4248bp|location=Sequence derived from alignment at Scaffold_340:47252..51499- (Ectocarpus subulatus male Bft15b)
GTGTGTGTGCGTGAGCTGCCACACAGATCTCACAGGGGAAACGGGGGAGC
ATCATGCGTCTGAGTGAGTTTCTTTCGGTGTTGAATCTTGCTGCAGTTGC
ACAAGGCGGCCGTGGGACGGTTGGATGGGGTTCAAAATCAGCGGCTGTTA
TGAGCGATCGACGCGTGTTCAATGACCGGCATCGCCAGCACCAGTCTCGC
AGCGCTGTTGCCTTCTTTGGACGCCGTCCTAGGACTACCACACCGAGAGT
GACTGGGAGCTCGGAGGCGGAATCAGCTGTCGACGCACTATCCGATGCAT
CAGGAGCAGGTGTCAAGGTAGTACGCGGTTTGCCGACAGCAGCGGACACT
TCAGCTGCTGATTCTGCAGGCGATTCAGCCGCAGCCCCAAGGTACGCGTA
CCCAGCATGCGTCCACCACAGCTGTTGCATGGTCGTCCTCACCAACCCAT
CTACTGCTGTAGTGCATGTTGCGGTTTTTTGGGCCTGCTTTGGATTTGTA
GACCTTTCTGTGCAGTTGGTGTGCTGAAGGTGCAGTCGACATGTCCGTTG
TTAGACTCCCCACATGAGGCTTTCGGCGGCCCGTCTCATCGTCGCATCCA
GCTTCAGTTGTGTACACATTTACTACAACAACTGTATACACATTCTATGT
GAAGATGTGAAACCTTCGAGCTTCGGCATGCCGTCAGCTTTCGCCGTTCT
GTGAAAACACCTTCGTCCGGACGCACTGCCCATCGCTCTCCATGCGTAAG
TTAACCCATATGCATAGCAAACCAGCCTTTTAGCGTTCACAAATAAAATC
GAAGTCACACTCCCAGGGCACTCGTACAGAAAATGGTTGGGTTGACGTTT
GGATGCTTGCAGCAGTACTCTACCTGCATTGGTGCTAACCAGTGTGCCGT
GGCTTGGTGTCATGTGCGTGGCGCTCTGTATGACCCCGGACAGAAAATCT
TTAGTCAACACCTGGCAAGAAAGCTGTGCGATGTACCATGTAAGAAGCTG
CGAGCAACGGGCCGTTACTTCAACGGGACGACAGGGCCGCAACGGCTGCA
CAGCAGTTGATTGGAATAACCTAGAGAGCATCTAGACGGAGGTCGCGACG
TCCGCTGCGGCCGTACGCGGTCCAAGCTTCTACCGCTGTTTCTACCACCA
ATGCATCGCCGTTATCGTCTCATTGGTGATTGTGTATCACCCCCCTTATT
TCCACATGTGTTTCCGACGTTTGTTTTCGCCCCGACCACAACGACGCCCA
GAGTGAGCGCCGCGCAGGGGATTGTCAACACATTCCGAGACTTTTGGGGT
CACGCAAGAGACGGGACGTTTGCCTTGTGGGGGAATTTCAAGGCAAGAAG
ACATGTTCCTTCACCTTGTGCATGGTTTCCTTCCGCATACTGATGGAAAA
AATAAAAAAAAACACTTGAAACTTGTTGTGGATTGTTCGAAGAAAGAATC
AACTGTATACATGCAAGCGAGTTGGCATATCGCTTTTCACGTCACCTGTG
CCGCGAATCCAGCCCGTTGTGCTTGAAACGAAGTAGAGTTGTATGCATGT
GATCGATAAATTGCACCTCTTGCGGTCTTGATGACATCACCTTCTTGTGT
ACCTCAGGACCAAGTCCGTCCTGTCCGTCGCTTTCGCGGGGACGCGTTTG
TTTGCTTGCGATAAGTAAAGCCGAGTCTGGGTTGTGTTTCGATCGATAGA
TGCACATGGTCGAGCTTTTCTGTGTCCGTATCTCGTGTCTTCCAGCATGA
CCCGCAATTGATTCCAAGACCGGCATCATCTGAGACGGCGGGAATTCAAC
ACGACCTTCCCTAGTGATCGTATTGGTAGGCAATGTGTTCTGTCCGCTGC
ACGGTTTCCCTGAGTTTGACCCCGACGTTGTCTCTTAACGCTCGTCCGCG
CTAAATATTGTGGTCATCGTTTCTTAAATTTGGTTTGCAGACTAGCCAAG
ATATCAGGAAGCGGGTGAAGGCTGGGCATGTAATGACCTATGCGGAGCAC
GCACACCTGGAGCGTGGCGCTATTGTGAGTTCTGTCTGGTTCTTGGCCGG
ACGTGCGATAGTGCAGAGAGTTGTTCTCCATAGTCTGCATGCCCCCCCCC
AATCTCTTCACGCTGGGGACACTTCGCTGAAGTGGTGCCATATGGCCACT
TGCGCTTGTTGAAGGCCCCGTCGGGCCTAGAATACGTTGGCTCTGTGTGG
GGTTGTATATCTCTCTCCGGTATTCCACGATCTTGTTCCTAGCCCCCCCC
CCCATAATTCCTTCCGCATGCTGTCATTACTGCTACTATGCTGTACGCTC
CTCGCGGAACTATCACGTCAACAGGACCGCAGAAAACTGCTGCAGTACCT
TATCGCCTACGCGGTATCGCCGAAGAACTTCGTGTACGTTGTCTGGTACG
TCCCGGGGCTCCTTCCCTCGACGTTCGTGAAACCTCATACCGTCCGCTCC
AAATACCACAGGTAAGCATGTATCGTACCGTTTTTCGAACCTTAATTTTC
TCCTTATCGCTTCTCGATGGCGAATTACATTTTTGCACCAAACTTGTGGT
ACACGGCGTGGCCGCAGTACGGCCTGCTGTTGTTTGGCTTTTTGGGGTGA
AAAAGTTGCGTGAGGGTCGTAGTGCGCGAGCCTGTTTGAGAGAGCGACTT
GTTGGCGATTTCCCTGCAGAACAGAACGATATCTGAACGTACTGCTAGGA
CTCACGCGTACCATGCATGTGGTGAGTGTTGTCGTCGCCCTCTCGGCCAC
GTTTCCAGAACTCGCTTCCTGACTTCTACTTGACTTGCTTCGCCACCCTT
CCCCGTCTTTTTCGAGGGTATTTTCACTGAACTCGTGTCGTCTGCGTGTA
CTTCTTTGCGTTGTGTTATGTGTGCTGTTCTCGACTAGACTCGCCCTCGA
GCGTGCGTCGGCCACGTGGGATGCTGTCACGGGGCTGGAGTTCCGGCTCC
TGAAAGCGGAGGAGGGGTTCAAGGGAAAGCGTAGAGAAGAGGGGTCACGC
CAGTCCAAGAAAATGGAGAAGCTGGAAAGGCAGAGAGAAATGGTGCTCGA
TGTGCTCGAGGCCGAGAGCAAGAGGTGAGTCCGTCAGACGTCGGAGCATG
CTTTGTTGTCTGGGCGCCTTGTGGTGTATGTTCTGGTGGGAGGTTGGGAG
GCGTGATGCTGAGGGTGTTGAGGAGGATTTTTCTTGCCAATTCGGTGCGT
TTCATGATGGTAGATTTGTTGTGCTGGGCTCTTGCGGTGAAGTGTAGCCC
GGAGCCTGTTATCGATGAACTCTGCGGAGTCCGAGGGAGGCTTGTCGAGT
GTGGGTGTGTCCCCTTCACCCGCGAGGTCTCGAGCACGATCACCGTACTG
AATGCCACAATCAGATCGGAAAACCGCTTCCATTTCGCCAGCGCGGTTGC
TCCTGGCGCATGCTGGACTTCGCGCAGCGATGGTTTGCTTTTCCCTTTTC
CTCTTTTGGGATACTTGCGCTCACAACTTCCTCGAAGAAACGCTGAGGTT
CCAATTGAAGGCAGTCCCTCGTGATCTGGGGACAGCAGGCCTTCCCTCTC
CTAACCTTACCTGTTTCGTGTCGTGTCGCCAACAACAGGCAAGTATTCGA
ACGGTTCCAGGACCACATGGTAGTCCCTGCCCCCGCCTCTCCAGACCCAG
AGAATGCCGCCGCAAGCAACAACAAGATCACCAAGAAGAGCAAGAAGCCA
AAGTCCCAGAAGCTCAAGCTTCCCTCGGCTAGCAAGGGGGTCCCTAACAC
GTACATCAAGGCGCTCGGCAAGGGCACGGGGCTGTCGGGGTGGTGGCACA
TCTCGCCTGGGTTCTACGTGCGGTACTGCCTCAGCGAGAGGTTGAGAGAC
CTGGGCAGGATGGACGATGTCCTGAGAACAGTCTCGCTGGAATCGCTCAG
CGACAGTGATCTGAGAGAGGCCTGCGACGCTAGGGCTATCAACGTGGGGA
ACCGGCTCGGGGGGGACCGTGAACCGCAAGACCTGCGGAAGTCGCTCGGG
GAGTGGCTTGACCTTACCTCGCCTGAGGTCGCCGCTGGGAGCAAGCTTGG
CCCTGACACGGTCTTCCTGCCGGATCGAGCTAGGTTGTTGGGTCTGGGGC
TCAACTGTTTGGAGAGCGCGCGGCAAGGGAGGACGGCAGAGTTGCCGAGA
AAGGCGCTCGCAGTCGTTGGAAAGGGGGGTGCGATTCCATGAAGCCTTTG
CCTCGTAGCCTGTTATTCTGAACAGGTTCCTAGTTCTTGCGTCATTAT
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Coding sequence (CDS) from alignment at Scaffold_340:47252..51499-

>EsuBft864_3a-0001 ID=EsuBft864_3a-0001|Name=EsuBft864_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1452bp|location=Sequence derived from alignment at Scaffold_340:47252..51499- (Ectocarpus subulatus male Bft15b)
ATGCGTCTGAGTGAGTTTCTTTCGGTGTTGAATCTTGCTGCAGTTGCACA
AGGCGGCCGTGGGACGGTTGGATGGGGTTCAAAATCAGCGGCTGTTATGA
GCGATCGACGCGTGTTCAATGACCGGCATCGCCAGCACCAGTCTCGCAGC
GCTGTTGCCTTCTTTGGACGCCGTCCTAGGACTACCACACCGAGAGTGAC
TGGGAGCTCGGAGGCGGAATCAGCTGTCGACGCACTATCCGATGCATCAG
GAGCAGGTGTCAAGGTAGTACGCGGTTTGCCGACAGCAGCGGACACTTCA
GCTGCTGATTCTGCAGGCGATTCAGCCGCAGCCCCAAGAGTGAGCGCCGC
GCAGGGGATTGTCAACACATTCCGAGACTTTTGGGGTCACGCAAGAGACG
GGACGTTTGCCTTGTGGGGGAATTTCAAGGCAAGAAGACATACTAGCCAA
GATATCAGGAAGCGGGTGAAGGCTGGGCATGTAATGACCTATGCGGAGCA
CGCACACCTGGAGCGTGGCGCTATTGACCGCAGAAAACTGCTGCAGTACC
TTATCGCCTACGCGGTATCGCCGAAGAACTTCGTGTACGTTGTCTGGTAC
GTCCCGGGGCTCCTTCCCTCGACGTTCGTGAAACCTCATACCGTCCGCTC
CAAATACCACAGACTCGCCCTCGAGCGTGCGTCGGCCACGTGGGATGCTG
TCACGGGGCTGGAGTTCCGGCTCCTGAAAGCGGAGGAGGGGTTCAAGGGA
AAGCGTAGAGAAGAGGGGTCACGCCAGTCCAAGAAAATGGAGAAGCTGGA
AAGGCAGAGAGAAATGGTGCTCGATGTGCTCGAGGCCGAGAGCAAGAGGC
AAGTATTCGAACGGTTCCAGGACCACATGGTAGTCCCTGCCCCCGCCTCT
CCAGACCCAGAGAATGCCGCCGCAAGCAACAACAAGATCACCAAGAAGAG
CAAGAAGCCAAAGTCCCAGAAGCTCAAGCTTCCCTCGGCTAGCAAGGGGG
TCCCTAACACGTACATCAAGGCGCTCGGCAAGGGCACGGGGCTGTCGGGG
TGGTGGCACATCTCGCCTGGGTTCTACGTGCGGTACTGCCTCAGCGAGAG
GTTGAGAGACCTGGGCAGGATGGACGATGTCCTGAGAACAGTCTCGCTGG
AATCGCTCAGCGACAGTGATCTGAGAGAGGCCTGCGACGCTAGGGCTATC
AACGTGGGGAACCGGCTCGGGGGGGACCGTGAACCGCAAGACCTGCGGAA
GTCGCTCGGGGAGTGGCTTGACCTTACCTCGCCTGAGGTCGCCGCTGGGA
GCAAGCTTGGCCCTGACACGGTCTTCCTGCCGGATCGAGCTAGGTTGTTG
GGTCTGGGGCTCAACTGTTTGGAGAGCGCGCGGCAAGGGAGGACGGCAGA
GTTGCCGAGAAAGGCGCTCGCAGTCGTTGGAAAGGGGGGTGCGATTCCAT
GA
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