EsuBft851_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft851_11a-0001
Unique NameEsuBft851_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:83614..88589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRU3
ProteomeIdEsuBft851_11
Protein domainsSSF117281
Protein domainsPTHR23244
Protein domainsIPR015915
Protein domainsIPR006652
Protein domainsPF13415
Protein domainsIPR015916
Ownerapollo_admin@sb-roscoff.fr
Notering finger protein b os:dictyostelium discoideum gn:rngb pe:2 sv:2 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1759
Hectar predicted targeting categoryother localisation
Evalue2.78e-259
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-08_002460.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnitrile biosynthetic process
COG categoryP
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0044464
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft851_11aEsuBft851_11aEctocarpus subulatus male Bft15bgeneScaffold_441 83614..88589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_11a-0001EsuBft851_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 83643..87945 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_11a-0001-exonagat-exon-101741Ectocarpus subulatus male Bft15bexonScaffold_441 83614..83801 +
EsuBft851_11a-0001-exonagat-exon-101738Ectocarpus subulatus male Bft15bexonScaffold_441 84526..84624 +
EsuBft851_11a-0001-exonagat-exon-101739Ectocarpus subulatus male Bft15bexonScaffold_441 84878..85013 +
EsuBft851_11a-0001-exonEsuBft851_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 85241..85624 +
EsuBft851_11a-0001-exonagat-exon-101740Ectocarpus subulatus male Bft15bexonScaffold_441 86877..86985 +
EsuBft851_11a-0001-exonagat-exon-101742Ectocarpus subulatus male Bft15bexonScaffold_441 87747..88589 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_11a-0001-exonagat-five_prime_utr-14408Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_441 83614..83642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_11a-0001-cdsEsuBft851_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 83643..83801 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_11a-0001-exonagat-three_prime_utr-22262Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 87946..88589 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1759bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTATTGGATCTTGACCGCTCCAGGTAGGGATGCCAGCGAGTGATACCAGC
ACCGGCGCGGTGGCACATCCATCTGTAGGCGGCATCGGAGACCGATCATC
ACGTGGTGAAACTTGGGTTTGCAAAACGATAGCGGCAAGCTCTTCGACGC
AGCAGCCACCTCCCAGAGGGGGATGCTCGTGGACGAAGGTTGGCTCAAAG
TTCGTCCTGTTTGGAGGGGCGGACGAACATCAGCAGCACTTGTCCGACAT
CCACTGCTTTGACGCGGCAATAGGGAAATGGGAGAAGACCCCTGTCAGTG
GTGCGCCACCTTCCCCGCGGAATGGTCATTCGGCGGTCGCACTCGGAGAT
TCTTTGGTGGTCTACGGCGGTATGAATGGACAGGATGGTGTGACGTTCAA
CGACCTGTTCGAGCTCCGACCCGGATCTACGGAGGGTATGGAGTGGGTGT
CCCTTCCCTGCGTGGACATCCCTCCTCGCAATGCACACACTGCAGTACTC
GATGGGGAAACCATGATAGTCATCGCAGGGGCTTCCCCGGAGGGACAAAC
GGACGACGTTTTCACCATCGACTTGTCGGATCGTTCAAACTTGGCCTGTC
GGAGAGTGTTCTGCAAGCCGTTCAAATCAGGGACTGGTGAACGACGTTGT
TCGGAAGGCGTTGGAGGAGTACCAGCCGCACGCGAGATGCACTCGACCTG
TGCTTATAACTCCGAGGGGACGACGGGTGAACGGGCGACTACAATATTGG
TCATGGGCGGACGTTCAGCTGGGGGTGTGCTTCGTGACCTGTTTGAGCTC
AGAACAGATACCTGGACATGGAAGCGATTAAAAGATGCTCCTGTTGCCCG
GTGCGCCCATTCAGCTTGTTTCGTACAAGCCGCAGGGACCATGGCCATCT
ACGGGGGATGGGATGGGGGCACAATCGTGGCCGACGATCTTCATCTTTAC
GATGTAGGATGTGGAGAGTGGACGAAACCAAAAATTTCTCCAACACCAGC
TGGTCGTTTCGCTCACGCGGCGTGCGCTGTTGGTTTGGAGGGAGAGATGC
TTGTGTTCGGAGGGGTACACCCTGGAGAGGATCTGGACGATGTTTTGTTG
CTGTCTGCCGCTTGACCTACACGCTGCATGTCATTGGTTCGAAAAGAGAA
GCGGCAAAGCTCAGCCTTTTCAGCAAGCGTCTTGTTCGGAGAACGAAATC
CCCAGCGGTTAAGTTTTGTCTCTGCTGCCCCAATCCGTACGTACCCAGTA
GGGTGTATCATCTCAGACATGCGATCGAAGTTTGGAGTAAATAAGCGACT
CTCGGGTTGTGAAAGTGAGTGAAACGAAAGCATGTAAGATCGAACCGAAG
GTGTGCATGTATCAAACAATCAAGAGAGGGAGCAAGCAGCAGCTGAGACC
AGTCATTGTTTGTGGTACTTCGGTACGACATTCGATCTGGAAGTTATGAA
ATTTTGAAATTATGTGTGTGTGTGTGGGGGGGTATAGTACGTTGTTAGCT
GTTAGGGGTCCAAGTCCGCCCCCCCGTTGTATATATTGCAGGATCCCGTC
ATGACCGATGATAATTTTCTTGCAATTGGGGTAGATGTTGACTCCTAAAC
CCTGGCTCGTTCATCGGATTTTGAGCATACACGAAACATTCATCATTTGC
ATGGGCCCAGACACAGAACCAACGTCGAAACGCGTTCCGTTCTCTAAAAA
GGTACCCACCCCCTCCCTCTGGCCAAAAGTATCATCTATTTAAGAGACAT
ATCCATACT
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protein sequence of EsuBft851_11a-0001

>EsuBft851_11 ID=EsuBft851_11|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=361bp
MPASDTSTGAVAHPSVGGIGDRSSRGETWVCKTIAASSSTQQPPPRGGCS
WTKVGSKFVLFGGADEHQQHLSDIHCFDAAIGKWEKTPVSGAPPSPRNGH
SAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPR
NAHTAVLDGETMIVIAGASPEGQTDDVFTIDLSDRSNLACRRVFCKPFKS
GTGERRCSEGVGGVPAAREMHSTCAYNSEGTTGERATTILVMGGRSAGGV
LRDLFELRTDTWTWKRLKDAPVARCAHSACFVQAAGTMAIYGGWDGGTIV
ADDLHLYDVGCGEWTKPKISPTPAGRFAHAACAVGLEGEMLVFGGVHPGE
DLDDVLLLSAA
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mRNA from alignment at Scaffold_441:83614..88589+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4976bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)
TTATTGGATCTTGACCGCTCCAGGTAGGGATGCCAGCGAGTGATACCAGC
ACCGGCGCGGTGGCACATCCATCTGTAGGCGGCATCGGAGACCGATCATC
ACGTGGTGAAACTTGGGTTTGCAAAACGATAGCGGCAAGCTCTTCGACGC
AGCAGCCACCTCCCAGAGGGGGATGCTCGTGGACGAAGGTCAGGGCTACG
TTACTTCTACCCTTACTCGTAGAGGTTGGGGTGTAGTCACAAACTGTGTT
GCAATCAGCGAGGTTTTACGCCAGACACGAACCGAAACAAGCTTAAAACC
GCGAAGCCTGCATGCCACAAAGGATGTATCGTCTAGTAGACAAACAGCAA
GAGTGGGCAGAAGTCACCACCGAGAACGCTAGCCCGTGTTTGTTGATGCA
TTCGCATGTGATTTTTGCGCATGGGTCATCCGTTTGGGTGGTTTGGAGAA
CATGGATGAAAACAGGACCGCCGTGTTTCCGTGTTTCCGTGGTCGACGGA
GGAAAGTAGAACGTGCCAGATCATTTCTGCATTCCAGTTGCTGGCAACGA
AGCTAACAGTCACTTACAAGCACCGAACAGCACTGCTATGACAGCCAGCT
CAGCTTATTTCTCGCCAATCCTCTCCTCCGGTTGAGCAAATATCCATGCT
TCTGTCTGTGACACAGGCTTCGAGGTAAGCGATTGTATCTAGTGCCTGTT
CGTGTTGTGCCCACAGCATCAGGAAGCAAACGTAGGATGCAGTGAAACTG
GTGCGTGCATTGTTAATCTTTCAGCTGTCTTGTTGGCGGGCAAGGCCTCG
AATCCGGCCGTCAGCGTTCGATCTGCACAGAAATTTCGCGACCTGTTTCA
ACCTTCTATGCAGGAGTTTGCATGATGTACAGACGATACCTCATGTGTCG
TGTGGCGCACAGGTTGGCTCAAAGTTCGTCCTGTTTGGAGGGGCGGACGA
ACATCAGCAGCACTTGTCCGACATCCACTGCTTTGACGCGGCAATAGGGA
AATGGGAGAAGGTACGTGTTAATTTGATGTGCCAAACGCGGTGATGAACA
CAGTGTGCAGCCTTTCATCCTTCATCATGTGCATGTGAGCACATTTGCCA
ATAAATTGGGATTCGATTCTGTTGGTTCATGGCAAATGGTACGCAGAGTA
TGGTCTTTCTTCCCTTGTGACACATGAAGAGGCGCGTTCCGTTAGATACG
CGTTAAGAACATATACATGTCGCTATTCTCACCCGAAAGGACCGCGACAC
TCTGCTGCAAGCAGACCCCTGTCAGTGGTGCGCCACCTTCCCCGCGGAAT
GGTCATTCGGCGGTCGCACTCGGAGATTCTTTGGTGGTCTACGGCGGTAT
GAATGGACAGGATGGTGTGACGTTCAACGACCTGTTCGAGCTCCGACCCG
GTGGGTATGTCGGCGTGATCTTGTCCGCGGTTCTGCCATCATAGTATCAG
TGCGCTTGTTCCATAACGTGCGGCCGTGTCGTTAAGATTCAATCTCCTCG
CCACAGCGTCTTTTTCGGTAGATTTTGCTCCAAAGTCTAACTGTACAGGA
CCTCAGCAGCGAACCGTAGCTTGATCAACCAAAACACAACCCCTCGCGTC
ACCCAACTGGGATTCATTGTTGTGCAGGATCTACGGAGGGTATGGAGTGG
GTGTCCCTTCCCTGCGTGGACATCCCTCCTCGCAATGCACACACTGCAGT
ACTCGATGGGGAAACCATGATAGTCATCGCAGGGGCTTCCCCGGAGGGAC
AAACGGACGACGTTTTCACCATCGACTTGTCGGATCGTTCAAACTTGGCC
TGTCGGAGAGTGTTCTGCAAGCCGTTCAAATCAGGGACTGGTGAACGACG
TTGTTCGGAAGGCGTTGGAGGAGTACCAGCCGCACGCGAGATGCACTCGA
CCTGTGCTTATAACTCCGAGGGGACGACGGGTGAACGGGCGACTACAATA
TTGGTCATGGGCGGACGTTCAGCTGGGGGTGTGCTTCGTGACCTGTTTGA
GCTCAGAACAGGTACTAATAAACCATTGATTTCTGATAAGAGAACAACGT
GCCAGGCCAGATGTTAAAGATGTTCGAACAAATGAAAATTCAGTCGTCAA
AGTACCAAAATCAGTTGACATTTTCTACTGAAAGTGAGAGAGATCGGCAG
ACTCTGTTAATACGAAGAATGGTTCGGGAGCGAAGTTAAAACAAACGTAG
CGTGAGGGGGAGCGCCAGCGGGAAGCATTTTCTTACTTGCAGTTTTGTAC
GCTTCAGTTCAAATGTTGACGAACATCGTGCCGAATAAATGACGAGGTGC
CTTGGGGGTTGGTGTGCCGCTGTGGGTGCCATGGCTTTTTGGCAAAGTTG
CAGCACCGAAGGGTGCCAAATATGTCGCAAAATTACAATGGAGTGACTGG
AAGAAGTCAACGTCAGAGGGTAGTTGGTTTGTGTGGGTATTGTTGACTCC
ATATGGGTTTGATTTTCCGCCCATAACGTTTTGGAGGAGGAAGCAACAGC
CGTTACAATTGGTGGCTTTGCAGTCCATTTTTCATGCCCAAGGTTTGATG
CTGTAGGATGTTGTATATATCAGGAAAAATGTTGCAACTATCCTCTCTCG
CACGAGAACGCGCAAATCAACGGTTCAGCTTTGCTGTGATCATCGGCCTC
GTTCGCAGTTGTGGCGATCGACGTTTTCTCTCGAAGAACCGCGTGAGCCG
GCCGGTTTTGGGCTTGCCGGCGAGTAGTGTGCCTTTTCTGGCTATTGTGC
CACGAACACCCGTGGTTATCGGTAGTGGGGGTGTTAATAGTCTCACTTTG
AGCAGTGTATGCATCCACTTTGAGCAGCCCCGCGGGATCTGATCGAACAA
AGCGACCCCTGCAAGCCGTGTATGCATCCACTTTGAGCAGCCCCGCGGGA
TCCGATCGAATAGAGCGACCCCTGCAATCCGTGTGCGACTTTGATTGGTT
TTGATTGAAGAAATACCTTGGGGAATCCAACAACGCTGAAATGAAATGGC
GTCGTTTGGAAGTATCGATCCTTCGACTCACTAATCTCTCTGGGTGTAGG
TTTTTTCATTTTGCGAGTATCGTAACTACCCGGCCTCAGCTATTGCGCGG
TGTAGTCGATCAAGGGAATTTAAAATCAGTATAAGCGCGCGAGAGACTAT
CCATATATTCATGTTTCTGTGTGTCACGTCTCTAGGATAGGTCCAATAAA
TACGTCACAGAAATTCCGTTCTTGACGCGAAGCTTTTTCTTCTGCCTGTA
ATAACTCTCACAGATACCTGGACATGGAAGCGATTAAAAGATGCTCCTGT
TGCCCGGTGCGCCCATTCAGCTTGTTTCGTACAAGCCGCAGGGACCATGG
CCATCTACGGGGGATGGGATGGGTAAGTGACTACTGTACGATCACACAGA
TTGGATGCAGATCGCCTCCGTAGTCGGTAACTCTTCTGGGAAACACAGTT
GGCCGAGATCGGCACGAAAGTAAACGTAAATGTGTTGTACCAGTCTGAAA
CGCAGCTTTACGATGGACCCCGCACTACATCCTGCTTGGTCGCCTGTTAA
GAGCGGTTCAGTGAATGAGCACATGAACCTCGACCCAACATTGTGCATCT
TTACTGCGGGGTTCTTTTATGGTATTTGGATGTAGATATGCGATCGTGGT
TGACCATGGTTATTTGGCGTCGTCAGATGCTATGACGCGACGTCATACTA
GAAGGGCTTTATGTCGAGGCATGTGCCCTTCTGTTCAGTGTGCGTACGAT
CCGGTAATCGTGTGTGCTTGGGATCTGTGAGTTGGCTTGGGAAAGCGTTA
TTCAAGAGAATGAGAACAACGGAGAGCAGCAACAACCTGCACCTGTGGTC
GGACAAGAGAGTTCCACACAGCTCAAATGTGATTAATTATGAACGGGTCA
AATCTTTATACACTGGCGTCTTCGGCAGGGCCTAACACTTCCTCTTGAAG
TAGGGATTGGAAATATGATTTGAACGTGCGAAGAATACGAACTCGCCCCA
TGATCATTCTTAAGAACCTAAGAGCACGTTTGGCGCACTCATTGATCTAC
CATCTGGATTGCGCTAGATTGCACCAAGAGTACACTGCTACAGTAGTACC
GCTGACATCCGCCTGCTTGTCTGTTTTAAACAGGGGCACAATCGTGGCCG
ACGATCTTCATCTTTACGATGTAGGATGTGGAGAGTGGACGAAACCAAAA
ATTTCTCCAACACCAGCTGGTCGTTTCGCTCACGCGGCGTGCGCTGTTGG
TTTGGAGGGAGAGATGCTTGTGTTCGGAGGGGTACACCCTGGAGAGGATC
TGGACGATGTTTTGTTGCTGTCTGCCGCTTGACCTACACGCTGCATGTCA
TTGGTTCGAAAAGAGAAGCGGCAAAGCTCAGCCTTTTCAGCAAGCGTCTT
GTTCGGAGAACGAAATCCCCAGCGGTTAAGTTTTGTCTCTGCTGCCCCAA
TCCGTACGTACCCAGTAGGGTGTATCATCTCAGACATGCGATCGAAGTTT
GGAGTAAATAAGCGACTCTCGGGTTGTGAAAGTGAGTGAAACGAAAGCAT
GTAAGATCGAACCGAAGGTGTGCATGTATCAAACAATCAAGAGAGGGAGC
AAGCAGCAGCTGAGACCAGTCATTGTTTGTGGTACTTCGGTACGACATTC
GATCTGGAAGTTATGAAATTTTGAAATTATGTGTGTGTGTGTGGGGGGGT
ATAGTACGTTGTTAGCTGTTAGGGGTCCAAGTCCGCCCCCCCGTTGTATA
TATTGCAGGATCCCGTCATGACCGATGATAATTTTCTTGCAATTGGGGTA
GATGTTGACTCCTAAACCCTGGCTCGTTCATCGGATTTTGAGCATACACG
AAACATTCATCATTTGCATGGGCCCAGACACAGAACCAACGTCGAAACGC
GTTCCGTTCTCTAAAAAGGTACCCACCCCCTCCCTCTGGCCAAAAGTATC
ATCTATTTAAGAGACATATCCATACT
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Coding sequence (CDS) from alignment at Scaffold_441:83614..88589+

>EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1086bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)
ATGCCAGCGAGTGATACCAGCACCGGCGCGGTGGCACATCCATCTGTAGG
CGGCATCGGAGACCGATCATCACGTGGTGAAACTTGGGTTTGCAAAACGA
TAGCGGCAAGCTCTTCGACGCAGCAGCCACCTCCCAGAGGGGGATGCTCG
TGGACGAAGGTTGGCTCAAAGTTCGTCCTGTTTGGAGGGGCGGACGAACA
TCAGCAGCACTTGTCCGACATCCACTGCTTTGACGCGGCAATAGGGAAAT
GGGAGAAGACCCCTGTCAGTGGTGCGCCACCTTCCCCGCGGAATGGTCAT
TCGGCGGTCGCACTCGGAGATTCTTTGGTGGTCTACGGCGGTATGAATGG
ACAGGATGGTGTGACGTTCAACGACCTGTTCGAGCTCCGACCCGGATCTA
CGGAGGGTATGGAGTGGGTGTCCCTTCCCTGCGTGGACATCCCTCCTCGC
AATGCACACACTGCAGTACTCGATGGGGAAACCATGATAGTCATCGCAGG
GGCTTCCCCGGAGGGACAAACGGACGACGTTTTCACCATCGACTTGTCGG
ATCGTTCAAACTTGGCCTGTCGGAGAGTGTTCTGCAAGCCGTTCAAATCA
GGGACTGGTGAACGACGTTGTTCGGAAGGCGTTGGAGGAGTACCAGCCGC
ACGCGAGATGCACTCGACCTGTGCTTATAACTCCGAGGGGACGACGGGTG
AACGGGCGACTACAATATTGGTCATGGGCGGACGTTCAGCTGGGGGTGTG
CTTCGTGACCTGTTTGAGCTCAGAACAGATACCTGGACATGGAAGCGATT
AAAAGATGCTCCTGTTGCCCGGTGCGCCCATTCAGCTTGTTTCGTACAAG
CCGCAGGGACCATGGCCATCTACGGGGGATGGGATGGGGGCACAATCGTG
GCCGACGATCTTCATCTTTACGATGTAGGATGTGGAGAGTGGACGAAACC
AAAAATTTCTCCAACACCAGCTGGTCGTTTCGCTCACGCGGCGTGCGCTG
TTGGTTTGGAGGGAGAGATGCTTGTGTTCGGAGGGGTACACCCTGGAGAG
GATCTGGACGATGTTTTGTTGCTGTCTGCCGCTTGA
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