Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRU3 |
| ProteomeId | EsuBft851_11 |
| Protein domains | SSF117281 |
| Protein domains | PTHR23244 |
| Protein domains | IPR015915 |
| Protein domains | IPR006652 |
| Protein domains | PF13415 |
| Protein domains | IPR015916 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | ring finger protein b os:dictyostelium discoideum gn:rngb pe:2 sv:2 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1759 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.78e-259 |
| EggNOG OGs | KOG0379@1|root,KOG0379@2759|Eukaryota |
| Ec32 ortholog description | Kelch-type beta propeller |
| Ec32 ortholog | Ec-08_002460.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | nitrile biosynthetic process |
| COG category | P |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0044464 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1759bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTATTGGATCTTGACCGCTCCAGGTAGGGATGCCAGCGAGTGATACCAGC
ACCGGCGCGGTGGCACATCCATCTGTAGGCGGCATCGGAGACCGATCATC
ACGTGGTGAAACTTGGGTTTGCAAAACGATAGCGGCAAGCTCTTCGACGC
AGCAGCCACCTCCCAGAGGGGGATGCTCGTGGACGAAGGTTGGCTCAAAG
TTCGTCCTGTTTGGAGGGGCGGACGAACATCAGCAGCACTTGTCCGACAT
CCACTGCTTTGACGCGGCAATAGGGAAATGGGAGAAGACCCCTGTCAGTG
GTGCGCCACCTTCCCCGCGGAATGGTCATTCGGCGGTCGCACTCGGAGAT
TCTTTGGTGGTCTACGGCGGTATGAATGGACAGGATGGTGTGACGTTCAA
CGACCTGTTCGAGCTCCGACCCGGATCTACGGAGGGTATGGAGTGGGTGT
CCCTTCCCTGCGTGGACATCCCTCCTCGCAATGCACACACTGCAGTACTC
GATGGGGAAACCATGATAGTCATCGCAGGGGCTTCCCCGGAGGGACAAAC
GGACGACGTTTTCACCATCGACTTGTCGGATCGTTCAAACTTGGCCTGTC
GGAGAGTGTTCTGCAAGCCGTTCAAATCAGGGACTGGTGAACGACGTTGT
TCGGAAGGCGTTGGAGGAGTACCAGCCGCACGCGAGATGCACTCGACCTG
TGCTTATAACTCCGAGGGGACGACGGGTGAACGGGCGACTACAATATTGG
TCATGGGCGGACGTTCAGCTGGGGGTGTGCTTCGTGACCTGTTTGAGCTC
AGAACAGATACCTGGACATGGAAGCGATTAAAAGATGCTCCTGTTGCCCG
GTGCGCCCATTCAGCTTGTTTCGTACAAGCCGCAGGGACCATGGCCATCT
ACGGGGGATGGGATGGGGGCACAATCGTGGCCGACGATCTTCATCTTTAC
GATGTAGGATGTGGAGAGTGGACGAAACCAAAAATTTCTCCAACACCAGC
TGGTCGTTTCGCTCACGCGGCGTGCGCTGTTGGTTTGGAGGGAGAGATGC
TTGTGTTCGGAGGGGTACACCCTGGAGAGGATCTGGACGATGTTTTGTTG
CTGTCTGCCGCTTGACCTACACGCTGCATGTCATTGGTTCGAAAAGAGAA
GCGGCAAAGCTCAGCCTTTTCAGCAAGCGTCTTGTTCGGAGAACGAAATC
CCCAGCGGTTAAGTTTTGTCTCTGCTGCCCCAATCCGTACGTACCCAGTA
GGGTGTATCATCTCAGACATGCGATCGAAGTTTGGAGTAAATAAGCGACT
CTCGGGTTGTGAAAGTGAGTGAAACGAAAGCATGTAAGATCGAACCGAAG
GTGTGCATGTATCAAACAATCAAGAGAGGGAGCAAGCAGCAGCTGAGACC
AGTCATTGTTTGTGGTACTTCGGTACGACATTCGATCTGGAAGTTATGAA
ATTTTGAAATTATGTGTGTGTGTGTGGGGGGGTATAGTACGTTGTTAGCT
GTTAGGGGTCCAAGTCCGCCCCCCCGTTGTATATATTGCAGGATCCCGTC
ATGACCGATGATAATTTTCTTGCAATTGGGGTAGATGTTGACTCCTAAAC
CCTGGCTCGTTCATCGGATTTTGAGCATACACGAAACATTCATCATTTGC
ATGGGCCCAGACACAGAACCAACGTCGAAACGCGTTCCGTTCTCTAAAAA
GGTACCCACCCCCTCCCTCTGGCCAAAAGTATCATCTATTTAAGAGACAT
ATCCATACT back to topprotein sequence of EsuBft851_11a-0001 >EsuBft851_11 ID=EsuBft851_11|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=361bp
MPASDTSTGAVAHPSVGGIGDRSSRGETWVCKTIAASSSTQQPPPRGGCS
WTKVGSKFVLFGGADEHQQHLSDIHCFDAAIGKWEKTPVSGAPPSPRNGH
SAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPR
NAHTAVLDGETMIVIAGASPEGQTDDVFTIDLSDRSNLACRRVFCKPFKS
GTGERRCSEGVGGVPAAREMHSTCAYNSEGTTGERATTILVMGGRSAGGV
LRDLFELRTDTWTWKRLKDAPVARCAHSACFVQAAGTMAIYGGWDGGTIV
ADDLHLYDVGCGEWTKPKISPTPAGRFAHAACAVGLEGEMLVFGGVHPGE
DLDDVLLLSAA back to topmRNA from alignment at Scaffold_441:83614..88589+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4976bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)
TTATTGGATCTTGACCGCTCCAGGTAGGGATGCCAGCGAGTGATACCAGC
ACCGGCGCGGTGGCACATCCATCTGTAGGCGGCATCGGAGACCGATCATC
ACGTGGTGAAACTTGGGTTTGCAAAACGATAGCGGCAAGCTCTTCGACGC
AGCAGCCACCTCCCAGAGGGGGATGCTCGTGGACGAAGGTCAGGGCTACG
TTACTTCTACCCTTACTCGTAGAGGTTGGGGTGTAGTCACAAACTGTGTT
GCAATCAGCGAGGTTTTACGCCAGACACGAACCGAAACAAGCTTAAAACC
GCGAAGCCTGCATGCCACAAAGGATGTATCGTCTAGTAGACAAACAGCAA
GAGTGGGCAGAAGTCACCACCGAGAACGCTAGCCCGTGTTTGTTGATGCA
TTCGCATGTGATTTTTGCGCATGGGTCATCCGTTTGGGTGGTTTGGAGAA
CATGGATGAAAACAGGACCGCCGTGTTTCCGTGTTTCCGTGGTCGACGGA
GGAAAGTAGAACGTGCCAGATCATTTCTGCATTCCAGTTGCTGGCAACGA
AGCTAACAGTCACTTACAAGCACCGAACAGCACTGCTATGACAGCCAGCT
CAGCTTATTTCTCGCCAATCCTCTCCTCCGGTTGAGCAAATATCCATGCT
TCTGTCTGTGACACAGGCTTCGAGGTAAGCGATTGTATCTAGTGCCTGTT
CGTGTTGTGCCCACAGCATCAGGAAGCAAACGTAGGATGCAGTGAAACTG
GTGCGTGCATTGTTAATCTTTCAGCTGTCTTGTTGGCGGGCAAGGCCTCG
AATCCGGCCGTCAGCGTTCGATCTGCACAGAAATTTCGCGACCTGTTTCA
ACCTTCTATGCAGGAGTTTGCATGATGTACAGACGATACCTCATGTGTCG
TGTGGCGCACAGGTTGGCTCAAAGTTCGTCCTGTTTGGAGGGGCGGACGA
ACATCAGCAGCACTTGTCCGACATCCACTGCTTTGACGCGGCAATAGGGA
AATGGGAGAAGGTACGTGTTAATTTGATGTGCCAAACGCGGTGATGAACA
CAGTGTGCAGCCTTTCATCCTTCATCATGTGCATGTGAGCACATTTGCCA
ATAAATTGGGATTCGATTCTGTTGGTTCATGGCAAATGGTACGCAGAGTA
TGGTCTTTCTTCCCTTGTGACACATGAAGAGGCGCGTTCCGTTAGATACG
CGTTAAGAACATATACATGTCGCTATTCTCACCCGAAAGGACCGCGACAC
TCTGCTGCAAGCAGACCCCTGTCAGTGGTGCGCCACCTTCCCCGCGGAAT
GGTCATTCGGCGGTCGCACTCGGAGATTCTTTGGTGGTCTACGGCGGTAT
GAATGGACAGGATGGTGTGACGTTCAACGACCTGTTCGAGCTCCGACCCG
GTGGGTATGTCGGCGTGATCTTGTCCGCGGTTCTGCCATCATAGTATCAG
TGCGCTTGTTCCATAACGTGCGGCCGTGTCGTTAAGATTCAATCTCCTCG
CCACAGCGTCTTTTTCGGTAGATTTTGCTCCAAAGTCTAACTGTACAGGA
CCTCAGCAGCGAACCGTAGCTTGATCAACCAAAACACAACCCCTCGCGTC
ACCCAACTGGGATTCATTGTTGTGCAGGATCTACGGAGGGTATGGAGTGG
GTGTCCCTTCCCTGCGTGGACATCCCTCCTCGCAATGCACACACTGCAGT
ACTCGATGGGGAAACCATGATAGTCATCGCAGGGGCTTCCCCGGAGGGAC
AAACGGACGACGTTTTCACCATCGACTTGTCGGATCGTTCAAACTTGGCC
TGTCGGAGAGTGTTCTGCAAGCCGTTCAAATCAGGGACTGGTGAACGACG
TTGTTCGGAAGGCGTTGGAGGAGTACCAGCCGCACGCGAGATGCACTCGA
CCTGTGCTTATAACTCCGAGGGGACGACGGGTGAACGGGCGACTACAATA
TTGGTCATGGGCGGACGTTCAGCTGGGGGTGTGCTTCGTGACCTGTTTGA
GCTCAGAACAGGTACTAATAAACCATTGATTTCTGATAAGAGAACAACGT
GCCAGGCCAGATGTTAAAGATGTTCGAACAAATGAAAATTCAGTCGTCAA
AGTACCAAAATCAGTTGACATTTTCTACTGAAAGTGAGAGAGATCGGCAG
ACTCTGTTAATACGAAGAATGGTTCGGGAGCGAAGTTAAAACAAACGTAG
CGTGAGGGGGAGCGCCAGCGGGAAGCATTTTCTTACTTGCAGTTTTGTAC
GCTTCAGTTCAAATGTTGACGAACATCGTGCCGAATAAATGACGAGGTGC
CTTGGGGGTTGGTGTGCCGCTGTGGGTGCCATGGCTTTTTGGCAAAGTTG
CAGCACCGAAGGGTGCCAAATATGTCGCAAAATTACAATGGAGTGACTGG
AAGAAGTCAACGTCAGAGGGTAGTTGGTTTGTGTGGGTATTGTTGACTCC
ATATGGGTTTGATTTTCCGCCCATAACGTTTTGGAGGAGGAAGCAACAGC
CGTTACAATTGGTGGCTTTGCAGTCCATTTTTCATGCCCAAGGTTTGATG
CTGTAGGATGTTGTATATATCAGGAAAAATGTTGCAACTATCCTCTCTCG
CACGAGAACGCGCAAATCAACGGTTCAGCTTTGCTGTGATCATCGGCCTC
GTTCGCAGTTGTGGCGATCGACGTTTTCTCTCGAAGAACCGCGTGAGCCG
GCCGGTTTTGGGCTTGCCGGCGAGTAGTGTGCCTTTTCTGGCTATTGTGC
CACGAACACCCGTGGTTATCGGTAGTGGGGGTGTTAATAGTCTCACTTTG
AGCAGTGTATGCATCCACTTTGAGCAGCCCCGCGGGATCTGATCGAACAA
AGCGACCCCTGCAAGCCGTGTATGCATCCACTTTGAGCAGCCCCGCGGGA
TCCGATCGAATAGAGCGACCCCTGCAATCCGTGTGCGACTTTGATTGGTT
TTGATTGAAGAAATACCTTGGGGAATCCAACAACGCTGAAATGAAATGGC
GTCGTTTGGAAGTATCGATCCTTCGACTCACTAATCTCTCTGGGTGTAGG
TTTTTTCATTTTGCGAGTATCGTAACTACCCGGCCTCAGCTATTGCGCGG
TGTAGTCGATCAAGGGAATTTAAAATCAGTATAAGCGCGCGAGAGACTAT
CCATATATTCATGTTTCTGTGTGTCACGTCTCTAGGATAGGTCCAATAAA
TACGTCACAGAAATTCCGTTCTTGACGCGAAGCTTTTTCTTCTGCCTGTA
ATAACTCTCACAGATACCTGGACATGGAAGCGATTAAAAGATGCTCCTGT
TGCCCGGTGCGCCCATTCAGCTTGTTTCGTACAAGCCGCAGGGACCATGG
CCATCTACGGGGGATGGGATGGGTAAGTGACTACTGTACGATCACACAGA
TTGGATGCAGATCGCCTCCGTAGTCGGTAACTCTTCTGGGAAACACAGTT
GGCCGAGATCGGCACGAAAGTAAACGTAAATGTGTTGTACCAGTCTGAAA
CGCAGCTTTACGATGGACCCCGCACTACATCCTGCTTGGTCGCCTGTTAA
GAGCGGTTCAGTGAATGAGCACATGAACCTCGACCCAACATTGTGCATCT
TTACTGCGGGGTTCTTTTATGGTATTTGGATGTAGATATGCGATCGTGGT
TGACCATGGTTATTTGGCGTCGTCAGATGCTATGACGCGACGTCATACTA
GAAGGGCTTTATGTCGAGGCATGTGCCCTTCTGTTCAGTGTGCGTACGAT
CCGGTAATCGTGTGTGCTTGGGATCTGTGAGTTGGCTTGGGAAAGCGTTA
TTCAAGAGAATGAGAACAACGGAGAGCAGCAACAACCTGCACCTGTGGTC
GGACAAGAGAGTTCCACACAGCTCAAATGTGATTAATTATGAACGGGTCA
AATCTTTATACACTGGCGTCTTCGGCAGGGCCTAACACTTCCTCTTGAAG
TAGGGATTGGAAATATGATTTGAACGTGCGAAGAATACGAACTCGCCCCA
TGATCATTCTTAAGAACCTAAGAGCACGTTTGGCGCACTCATTGATCTAC
CATCTGGATTGCGCTAGATTGCACCAAGAGTACACTGCTACAGTAGTACC
GCTGACATCCGCCTGCTTGTCTGTTTTAAACAGGGGCACAATCGTGGCCG
ACGATCTTCATCTTTACGATGTAGGATGTGGAGAGTGGACGAAACCAAAA
ATTTCTCCAACACCAGCTGGTCGTTTCGCTCACGCGGCGTGCGCTGTTGG
TTTGGAGGGAGAGATGCTTGTGTTCGGAGGGGTACACCCTGGAGAGGATC
TGGACGATGTTTTGTTGCTGTCTGCCGCTTGACCTACACGCTGCATGTCA
TTGGTTCGAAAAGAGAAGCGGCAAAGCTCAGCCTTTTCAGCAAGCGTCTT
GTTCGGAGAACGAAATCCCCAGCGGTTAAGTTTTGTCTCTGCTGCCCCAA
TCCGTACGTACCCAGTAGGGTGTATCATCTCAGACATGCGATCGAAGTTT
GGAGTAAATAAGCGACTCTCGGGTTGTGAAAGTGAGTGAAACGAAAGCAT
GTAAGATCGAACCGAAGGTGTGCATGTATCAAACAATCAAGAGAGGGAGC
AAGCAGCAGCTGAGACCAGTCATTGTTTGTGGTACTTCGGTACGACATTC
GATCTGGAAGTTATGAAATTTTGAAATTATGTGTGTGTGTGTGGGGGGGT
ATAGTACGTTGTTAGCTGTTAGGGGTCCAAGTCCGCCCCCCCGTTGTATA
TATTGCAGGATCCCGTCATGACCGATGATAATTTTCTTGCAATTGGGGTA
GATGTTGACTCCTAAACCCTGGCTCGTTCATCGGATTTTGAGCATACACG
AAACATTCATCATTTGCATGGGCCCAGACACAGAACCAACGTCGAAACGC
GTTCCGTTCTCTAAAAAGGTACCCACCCCCTCCCTCTGGCCAAAAGTATC
ATCTATTTAAGAGACATATCCATACT back to topCoding sequence (CDS) from alignment at Scaffold_441:83614..88589+ >EsuBft851_11a-0001 ID=EsuBft851_11a-0001|Name=EsuBft851_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1086bp|location=Sequence derived from alignment at Scaffold_441:83614..88589+ (Ectocarpus subulatus male Bft15b)
ATGCCAGCGAGTGATACCAGCACCGGCGCGGTGGCACATCCATCTGTAGG
CGGCATCGGAGACCGATCATCACGTGGTGAAACTTGGGTTTGCAAAACGA
TAGCGGCAAGCTCTTCGACGCAGCAGCCACCTCCCAGAGGGGGATGCTCG
TGGACGAAGGTTGGCTCAAAGTTCGTCCTGTTTGGAGGGGCGGACGAACA
TCAGCAGCACTTGTCCGACATCCACTGCTTTGACGCGGCAATAGGGAAAT
GGGAGAAGACCCCTGTCAGTGGTGCGCCACCTTCCCCGCGGAATGGTCAT
TCGGCGGTCGCACTCGGAGATTCTTTGGTGGTCTACGGCGGTATGAATGG
ACAGGATGGTGTGACGTTCAACGACCTGTTCGAGCTCCGACCCGGATCTA
CGGAGGGTATGGAGTGGGTGTCCCTTCCCTGCGTGGACATCCCTCCTCGC
AATGCACACACTGCAGTACTCGATGGGGAAACCATGATAGTCATCGCAGG
GGCTTCCCCGGAGGGACAAACGGACGACGTTTTCACCATCGACTTGTCGG
ATCGTTCAAACTTGGCCTGTCGGAGAGTGTTCTGCAAGCCGTTCAAATCA
GGGACTGGTGAACGACGTTGTTCGGAAGGCGTTGGAGGAGTACCAGCCGC
ACGCGAGATGCACTCGACCTGTGCTTATAACTCCGAGGGGACGACGGGTG
AACGGGCGACTACAATATTGGTCATGGGCGGACGTTCAGCTGGGGGTGTG
CTTCGTGACCTGTTTGAGCTCAGAACAGATACCTGGACATGGAAGCGATT
AAAAGATGCTCCTGTTGCCCGGTGCGCCCATTCAGCTTGTTTCGTACAAG
CCGCAGGGACCATGGCCATCTACGGGGGATGGGATGGGGGCACAATCGTG
GCCGACGATCTTCATCTTTACGATGTAGGATGTGGAGAGTGGACGAAACC
AAAAATTTCTCCAACACCAGCTGGTCGTTTCGCTCACGCGGCGTGCGCTG
TTGGTTTGGAGGGAGAGATGCTTGTGTTCGGAGGGGTACACCCTGGAGAG
GATCTGGACGATGTTTTGTTGCTGTCTGCCGCTTGA back to top
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