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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7091.BGIBMGA014263-TA |
| ProteomeId | EsuBft811_2 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 33208|Metazoa |
| Length | 2902 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.85e-17 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft811_2a-0001 ID=EsuBft811_2a-0001|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2902bp|location=Sequence derived from alignment at Scaffold_230:285020..288824- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTA CTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCA AGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACG TCGGCGCCAGCCGGCGAGGGGAGTTCCGCTGGTATCCCCGCTGCGCCGAC GCATCCCCCGTTCACGCCGGTCGTCTCGATCAACTTCGGCCCAGCCCCGA CGCCTTCGACCGCCGCACAGCCGCCGCCAGCGCCCAGGCCCACGCCGTCG CCCGCACCCGCTCCTGGCCAGCCGCCCTCTGCCGCTTCGCCGTCATCGTC GGCGACCCCCGCTCCTGGCCAGACTCCTTCTGCCGCATCGCCGTCACCGT CGGCGACTCCATCTCCAGTTCAGCTACCGCCGCCGCCGCCGCCGCCGCCG GGCCCCGCGTTGCCCCCGCTCTCGGCCCACGCCATGCGGCAGCTTCGCCC GGGCAAGAAGGCCGAGGGTATGAAGGACCCGCGACTGCCAGGCCGCACGA AATCGGGCACGAGGCACAGCACAGGGCTCATCTCGATGCTGGACAAGAAC ACTCTGGTTTCAATGCTGGAGACCCAGAGCGCGGTGCATGAGGAGCGCAG GGAGCCGGGGGGAGCGGGGACCGGAGAGCCGGGGGGAGCGGAGACCGGAG AGCAGGGGGGAGCGCTCGAAGCCGTGGACCTGGGGGCTGGAGGAGCGGGC TTACCACTTGCATGTGCCACGCTCCTCGCCAAACGGGAAGACATCGATGC CATACTGCGCGACCAGCGCCCGCCGGAGCAACGCTCTGATCTCCCGCACT GCCAGGCGACCGACCTTCGCATCTCCAAGAGCTACAACGAGGTGTTGGCA GCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATATTGAGCC AGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATACGATTGCCGC AGGGATGTGGAGCTCTATCTGGAATGATTGTTACACTAGGCAAGAGTCTG TATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGTG TTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTTGTGTGTTTC GATTGATTGAAGGGGGGTGTGTGGTTTTGATTTTGGTAGTGCACTGGGAT GCAGCGGTGGGTAGAAGGATTCAGCTTGCAGAGGTTTGGCGATTTATGGT GCCGAAGGTCAGCAAGCCGTGCATCCCAGTCTTTGAGGACATCCAGGGGG CGATTCAACTAGCGCAGAACTCCATCTCGAACTCGAACTCGAAGCACATT GATGTAAGGCACCATTTTCTCAGGGAATTGGTAGAGAGGAAGGAGATTTC GGTGATCAACGTGCCGCCTCCGCACCAGCGTGCAGACGTTCTCACGAAGA GGTTGCCCAAGGATGCGTTCGCGCCTCACCGTGATTTTGTGATGAATTCG GCATGAGTTTTTTTATTTTTTTGATGAGTTTGGTTTGGCATTCGATTTGA TTGTTTTGCTTTCCGCGCTAAGTTCATATCACGCGCGATGCAGCAGTATT CATGTTTCTTGGACGTGGTTTTCGTTTCTTATATTTTGGAAGTAATCTTG ATGGCATATATTCAGGAAAAGACGTCTTTTGGTTGAGATATCCGGTATTA TTTCGAAATTTGCAGTGAAGATACTGTTGCGAGCAGGGGGGATGTTTGAT ATACTCGCAGCAGTCTCTAGACGTGAGGATCCTGGGGGATACGTGTTGGG AATTTCGTATGTTGATGGGTACCACCGGTGCAGATACAAGGACCCTTTTG GCCTTGGTTGCGGTGTTGAAGGCTCGCGCATGTAGCGCACTGCTTTCGCT CTCTCCACCGCTACCGCCGTCTCTCTCCAATCAAGTTTCCTTCTGCAACG CTTTCTCCAACGCCAACGCCATATCTGTCTCTACCTCTCTCTCTCGGCCT AACACGGCCGACTACCCACTGCCCCAAGAGACGCCAAACACGGGCTTGCT GCACCCCGCGTAGTTTATCTTTCAGAGGGAGAAAGCGAGGAACCGACTGG GATGGACAGCAACGAGAGCGTGTACGAAGCGGAGCGGGTCGAGTTTGATC GTGCTACGACTGGCCACAGCGGCACCGGAGCAGCGGCACCGGAGCAGCGG AACCGGAGCAGGCGGACGGCATCAAACCGTGGCGCACGGACAAACATCTC TTGTGTTGTCAAATATTTTCCCTTTTTTTTCCTGAATACAGGTGTTGGGT GTGTGTGAACACGTCTGACGTCACTGGTTTTGTAGAGAGACGCGGCAGAG ATGGTGCGGATAACCCGGGTGCTTTAATTGTGTACCTGCATCGTGGAAGA CCCCTTCAATGTGGAACGATTCCTTATCAGTGTCGATATTAACTCTGCTG TGCCTAACACACATGATCTGGATAGATTCGGGTGATTGTCAATTGCAACG ATGGCTTTGGTTGGGTGTTCTTCTTCGTTGTATGTCCACGGACTCATTCT GACAGCACTTCAGACAGCAGGTGCATGCCCCGAGCTTGTGTACCATGCAC CCATGGTGGTATTATTGCACACAGCACTTCAGACAGCAGTACGCTGTAGT AGTCGACAAACATTCATTTGGTAAAATGCGGGACAAGGGGGGTGATGCTG CTGCTGTAGTCGATTTGTAGTGTGTGGGCGTTTAGTTGAGTTGTGAGCAT GCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCAGGCTTGCGAACCA TATTCTTGCTAATAATGTGTGTGTTCTTTAGATCTTCTGATGGCTCCAGA ATATTTGTGACCACGGACCGAGTCTTTGCTAGAATTTGGGATTAGCAACT GA back to topprotein sequence of EsuBft811_2a-0001 >EsuBft811_2 ID=EsuBft811_2|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=501bp
MREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT SAPAGEGSSAGIPAAPTHPPFTPVVSINFGPAPTPSTAAQPPPAPRPTPS PAPAPGQPPSAASPSSSATPAPGQTPSAASPSPSATPSPVQLPPPPPPPP GPALPPLSAHAMRQLRPGKKAEGMKDPRLPGRTKSGTRHSTGLISMLDKN TLVSMLETQSAVHEERREPGGAGTGEPGGAETGEQGGALEAVDLGAGGAG LPLACATLLAKREDIDAILRDQRPPEQRSDLPHCQATDLRISKSYNEVLA ALACELNLDLCHFDIEPAFVRSELEEDVYIRLPQGCGALSGMIVTLGKSL YGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHWD AAVGRRIQLAEVWRFMVPKVSKPCIPVFEDIQGAIQLAQNSISNSNSKHI DVRHHFLRELVERKEISVINVPPPHQRADVLTKRLPKDAFAPHRDFVMNS A back to topmRNA from alignment at Scaffold_230:285020..288824- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft811_2a-0001 ID=EsuBft811_2a-0001|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3805bp|location=Sequence derived from alignment at Scaffold_230:285020..288824- (Ectocarpus subulatus male Bft15b) ATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTA
CTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCA
AGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACG
TCGGCGCCAGCCGGCGAGGGGAGTTCCGCTGGTATCCCCGCTGCGCCGAC
GCATCCCCCGTTCACGCCGGTCGTCTCGATCAACTTCGGCCCAGCCCCGA
CGCCTTCGACCGCCGCACAGCCGCCGCCAGCGCCCAGGCCCACGCCGTCG
CCCGCACCCGCTCCTGGCCAGCCGCCCTCTGCCGCTTCGCCGTCATCGTC
GGCGACCCCCGCTCCTGGCCAGACTCCTTCTGCCGCATCGCCGTCACCGT
CGGCGACTCCATCTCCAGTTCAGCTACCGCCGCCGCCGCCGCCGCCGCCG
GGCCCCGCGTTGCCCCCGCTCTCGGCCCACGCCATGCGGCAGCTTCGCCC
GGGCAAGAAGGCCGAGGGTATGAAGGACCCGCGACTGCCAGGCCGCACGA
AATCGGGCACGAGGCACAGCACAGGGCTCATCTCGATGCTGGACAAGAAC
ACTCTGGTTTCAATGCTGGAGACCCAGAGCGCGGTGCATGAGGAGCGCAG
GGAGCCGGGGGGAGCGGGGACCGGAGAGCCGGGGGGAGCGGAGACCGGAG
AGCAGGGGGGAGCGCTCGAAGCCGTGGACCTGGGGGCTGGAGGAGCGGGC
TTACCACTTGCATGTGCCACGCTCCTCGCCAAACGGGAAGACATCGATGC
CATACTGCGCGACCAGCGCCCGCCGGAGCAACGCTCTGATCTCCCGCACT
GCCAGGCGACCGACCTTCGCATCTCCAAGAGCTACAACGAGGTTATGGCG
TCGGAGTACCGGCACCTCTGGGGCGACTCGATGAAAAGGGAGTTTTTCGG
GTTGCTGGAAGTGGGGACTTTTACTCCGGCGAAGTAGCAGTCAGTGCAGA
ACGCGATTATCGTGAAGTGGGTATTCAATTGGAAGGCAGATGAGTTTGGA
TGGGTCACTAAGGTCAAGGCGAGACTTGTAGCGAGAGGTGATATGCAGAG
AGAGTACATTGACTTTGTAGAGTTGTATGCGCCTACCGTTTCTGTTTCGT
GTGTCAGGTGTTGGCAGCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTC
ATTTCGATATTGAGCCAGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTA
TACATACGATTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGTTAC
ACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGCATG
CAATGCTGAAGAGGTGTTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCC
GATGCTTGTGTGTTTCGATTGATTGAAGGGGGGTGTGTGGTTTTGATTTT
GGTAGTACATGTAGATGACAGTTTCTGCTGTGGGAGAGACGGAGAGATGT
GACACGTTTTGCGCCGACCTTAACAAGTCCGTGCCGGTGAAGAACCTGGG
AGAGTTGAGATAGTATTCCGGGTGCTTTTACGAGAAAAGTAAGGAGACTG
GTAGGCTGACGATTTCTCAGCAGACTTTCACCGATGAGCATGCAGCAAAG
TATGGAGTAGCAGGGAGTAAGAGCGTTCCCATGTCTTCGGGGGTCAAGCT
TTCTGACTTTGATGCGGATGAAGAGGCGATAGATTTTCCGTTTCGTGAGC
TAGTAGGATCTTTGATGTGGCTGGCGACTCAGACTAGGCTAGACAATGCG
AATGCAAAGGGCAGAAGCTAGATATTGCGCGTCTCCGAAGCAGGTGCACT
GGGATGCAGCGGTGGGTATATTAGGGTATGCCAAGAGGATGAGATACATG
GGTGTTTCATTTCAGAGAGGTACGGTAGGTAGAAGGATTCAGCTTGCAGA
GGTACGCTGATGCGGACTCTGCGAGCAAGGCAGCAGACCGTAGGTCGGTA
TCAGGGGGGATAGTAACATGCGGAGGAGGCGCCGTGTCTTGGTGTTCCAG
AACGCAGAAGTGTGTTACGCTTTCGACGACAAGCAGAGTATGTCGCGCTT
GGCGATGTAGTGAAGGGGATTTTGTTTTTGAGGCAGGTTTGGCGATTTAT
GGTGCCGAAGGTCAGCAAGCCGTGCATCCCAGTCTTTGAGGACATCCAGG
GGGCGATTCAACTAGCGCAGAACTCCATCTCGAACTCGAACTCGAAGCAC
ATTGATGTAAGGCACCATTTTCTCAGGGAATTGGTAGAGAGGAAGGAGAT
TTCGGTGATCAACGTGCCGCCTCCGCACCAGCGTGCAGACGTTCTCACGA
AGAGGTTGCCCAAGGATGCGTTCGCGCCTCACCGTGATTTTGTGATGAAT
TCGGCATGAGTTTTTTTATTTTTTTGATGAGTTTGGTTTGGCATTCGATT
TGATTGTTTTGCTTTCCGCGCTAAGTTCATATCACGCGCGATGCAGCAGT
ATTCATGTTTCTTGGACGTGGTTTTCGTTTCTTATATTTTGGAAGTAATC
TTGATGGCATATATTCAGGAAAAGACGTCTTTTGGTTGAGATATCCGGTA
TTATTTCGAAATTTGCAGTGAAGATACTGTTGCGAGCAGGGGGGATGTTT
GATATACTCGCAGCAGTCTCTAGACGTGAGGATCCTGGGGGATACGTGTT
GGGAATTTCGTATGTTGATGGGTACCACCGGTGCAGATACAAGGACCCTT
TTGGCCTTGGTTGCGGTGTTGAAGGCTCGCGCATGTAGCGCACTGCTTTC
GCTCTCTCCACCGCTACCGCCGTCTCTCTCCAATCAAGTTTCCTTCTGCA
ACGCTTTCTCCAACGCCAACGCCATATCTGTCTCTACCTCTCTCTCTCGG
CCTAACACGGCCGACTACCCACTGCCCCAAGAGACGCCAAACACGGGCTT
GCTGCACCCCGCGTAGTTTATCTTTCAGAGGGAGAAAGCGAGGAACCGAC
TGGGATGGACAGCAACGAGAGCGTGTACGAAGCGGAGCGGGTCGAGTTTG
ATCGTGCTACGACTGGCCACAGCGGCACCGGAGCAGCGGCACCGGAGCAG
CGGAACCGGAGCAGGCGGACGGCATCAAACCGTGGCGCACGGACAAACAT
CTCTTGTGTTGTCAAATATTTTCCCTTTTTTTTCCTGAATACAGGTGTTG
GGTGTGTGTGAACACGTCTGACGTCACTGGTTTTGTAGAGAGACGCGGCA
GAGATGGTGCGGATAACCCGGGTGCTTTAATTGTGTACCTGCATCGTGGA
AGACCCCTTCAATGTGGAACGATTCCTTATCAGTGTCGATATTAACTCTG
CTGTGCCTAACACACATGATCTGGATAGATTCGGGTGATTGTCAATTGCA
ACGATGGCTTTGGTTGGGTGTTCTTCTTCGTTGTATGTCCACGGACTCAT
TCTGACAGCACTTCAGACAGCAGGTGCATGCCCCGAGCTTGTGTACCATG
CACCCATGGTGGTATTATTGCACACAGCACTTCAGACAGCAGTACGCTGT
AGTAGTCGACAAACATTCATTTGGTAAAATGCGGGACAAGGGGGGTGATG
CTGCTGCTGTAGTCGATTTGTAGTGTGTGGGCGTTTAGTTGAGTTGTGAG
CATGCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCAGGCTTGCGAA
CCATATTCTTGCTAATAATGTGTGTGTTCTTTAGATCTTCTGATGGCTCC
AGAATATTTGTGACCACGGACCGAGTCTTTGCTAGAATTTGGGATTAGCA
ACTGA back to topCoding sequence (CDS) from alignment at Scaffold_230:285020..288824- >EsuBft811_2a-0001 ID=EsuBft811_2a-0001|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1506bp|location=Sequence derived from alignment at Scaffold_230:285020..288824- (Ectocarpus subulatus male Bft15b) ATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTA CTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCA AGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACG TCGGCGCCAGCCGGCGAGGGGAGTTCCGCTGGTATCCCCGCTGCGCCGAC GCATCCCCCGTTCACGCCGGTCGTCTCGATCAACTTCGGCCCAGCCCCGA CGCCTTCGACCGCCGCACAGCCGCCGCCAGCGCCCAGGCCCACGCCGTCG CCCGCACCCGCTCCTGGCCAGCCGCCCTCTGCCGCTTCGCCGTCATCGTC GGCGACCCCCGCTCCTGGCCAGACTCCTTCTGCCGCATCGCCGTCACCGT CGGCGACTCCATCTCCAGTTCAGCTACCGCCGCCGCCGCCGCCGCCGCCG GGCCCCGCGTTGCCCCCGCTCTCGGCCCACGCCATGCGGCAGCTTCGCCC GGGCAAGAAGGCCGAGGGTATGAAGGACCCGCGACTGCCAGGCCGCACGA AATCGGGCACGAGGCACAGCACAGGGCTCATCTCGATGCTGGACAAGAAC ACTCTGGTTTCAATGCTGGAGACCCAGAGCGCGGTGCATGAGGAGCGCAG GGAGCCGGGGGGAGCGGGGACCGGAGAGCCGGGGGGAGCGGAGACCGGAG AGCAGGGGGGAGCGCTCGAAGCCGTGGACCTGGGGGCTGGAGGAGCGGGC TTACCACTTGCATGTGCCACGCTCCTCGCCAAACGGGAAGACATCGATGC CATACTGCGCGACCAGCGCCCGCCGGAGCAACGCTCTGATCTCCCGCACT GCCAGGCGACCGACCTTCGCATCTCCAAGAGCTACAACGAGGTGTTGGCA GCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATATTGAGCC AGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATACGATTGCCGC AGGGATGTGGAGCTCTATCTGGAATGATTGTTACACTAGGCAAGAGTCTG TATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGTG TTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTTGTGTGTTTC GATTGATTGAAGGGGGGTGTGTGGTTTTGATTTTGGTAGTGCACTGGGAT GCAGCGGTGGGTAGAAGGATTCAGCTTGCAGAGGTTTGGCGATTTATGGT GCCGAAGGTCAGCAAGCCGTGCATCCCAGTCTTTGAGGACATCCAGGGGG CGATTCAACTAGCGCAGAACTCCATCTCGAACTCGAACTCGAAGCACATT GATGTAAGGCACCATTTTCTCAGGGAATTGGTAGAGAGGAAGGAGATTTC GGTGATCAACGTGCCGCCTCCGCACCAGCGTGCAGACGTTCTCACGAAGA GGTTGCCCAAGGATGCGTTCGCGCCTCACCGTGATTTTGTGATGAATTCG GCATGA back to top
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