EsuBft811_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft811_2a-0001
Unique NameEsuBft811_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:285020..288824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7091.BGIBMGA014263-TA
ProteomeIdEsuBft811_2
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length2902
Hectar predicted targeting categoryother localisation
Evalue1.85e-17
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft811_2aEsuBft811_2aEctocarpus subulatus male Bft15bgeneScaffold_230 285020..288824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_2a-0001EsuBft811_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 286416..288824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_2a-0001-exonagat-exon-27516Ectocarpus subulatus male Bft15bexonScaffold_230 285020..286688 -
EsuBft811_2a-0001-exonEsuBft811_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 286874..286896 -
EsuBft811_2a-0001-exonagat-exon-27518Ectocarpus subulatus male Bft15bexonScaffold_230 286960..286981 -
EsuBft811_2a-0001-exonagat-exon-27517Ectocarpus subulatus male Bft15bexonScaffold_230 287371..287667 -
EsuBft811_2a-0001-exonagat-exon-27519Ectocarpus subulatus male Bft15bexonScaffold_230 287934..288824 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_2a-0001-exonagat-three_prime_utr-21825Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 285020..286415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_2a-0001-cdsEsuBft811_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 286416..286688 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft811_2a-0001 ID=EsuBft811_2a-0001|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2902bp|location=Sequence derived from alignment at Scaffold_230:285020..288824- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTA
CTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCA
AGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACG
TCGGCGCCAGCCGGCGAGGGGAGTTCCGCTGGTATCCCCGCTGCGCCGAC
GCATCCCCCGTTCACGCCGGTCGTCTCGATCAACTTCGGCCCAGCCCCGA
CGCCTTCGACCGCCGCACAGCCGCCGCCAGCGCCCAGGCCCACGCCGTCG
CCCGCACCCGCTCCTGGCCAGCCGCCCTCTGCCGCTTCGCCGTCATCGTC
GGCGACCCCCGCTCCTGGCCAGACTCCTTCTGCCGCATCGCCGTCACCGT
CGGCGACTCCATCTCCAGTTCAGCTACCGCCGCCGCCGCCGCCGCCGCCG
GGCCCCGCGTTGCCCCCGCTCTCGGCCCACGCCATGCGGCAGCTTCGCCC
GGGCAAGAAGGCCGAGGGTATGAAGGACCCGCGACTGCCAGGCCGCACGA
AATCGGGCACGAGGCACAGCACAGGGCTCATCTCGATGCTGGACAAGAAC
ACTCTGGTTTCAATGCTGGAGACCCAGAGCGCGGTGCATGAGGAGCGCAG
GGAGCCGGGGGGAGCGGGGACCGGAGAGCCGGGGGGAGCGGAGACCGGAG
AGCAGGGGGGAGCGCTCGAAGCCGTGGACCTGGGGGCTGGAGGAGCGGGC
TTACCACTTGCATGTGCCACGCTCCTCGCCAAACGGGAAGACATCGATGC
CATACTGCGCGACCAGCGCCCGCCGGAGCAACGCTCTGATCTCCCGCACT
GCCAGGCGACCGACCTTCGCATCTCCAAGAGCTACAACGAGGTGTTGGCA
GCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATATTGAGCC
AGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATACGATTGCCGC
AGGGATGTGGAGCTCTATCTGGAATGATTGTTACACTAGGCAAGAGTCTG
TATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGTG
TTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTTGTGTGTTTC
GATTGATTGAAGGGGGGTGTGTGGTTTTGATTTTGGTAGTGCACTGGGAT
GCAGCGGTGGGTAGAAGGATTCAGCTTGCAGAGGTTTGGCGATTTATGGT
GCCGAAGGTCAGCAAGCCGTGCATCCCAGTCTTTGAGGACATCCAGGGGG
CGATTCAACTAGCGCAGAACTCCATCTCGAACTCGAACTCGAAGCACATT
GATGTAAGGCACCATTTTCTCAGGGAATTGGTAGAGAGGAAGGAGATTTC
GGTGATCAACGTGCCGCCTCCGCACCAGCGTGCAGACGTTCTCACGAAGA
GGTTGCCCAAGGATGCGTTCGCGCCTCACCGTGATTTTGTGATGAATTCG
GCATGAGTTTTTTTATTTTTTTGATGAGTTTGGTTTGGCATTCGATTTGA
TTGTTTTGCTTTCCGCGCTAAGTTCATATCACGCGCGATGCAGCAGTATT
CATGTTTCTTGGACGTGGTTTTCGTTTCTTATATTTTGGAAGTAATCTTG
ATGGCATATATTCAGGAAAAGACGTCTTTTGGTTGAGATATCCGGTATTA
TTTCGAAATTTGCAGTGAAGATACTGTTGCGAGCAGGGGGGATGTTTGAT
ATACTCGCAGCAGTCTCTAGACGTGAGGATCCTGGGGGATACGTGTTGGG
AATTTCGTATGTTGATGGGTACCACCGGTGCAGATACAAGGACCCTTTTG
GCCTTGGTTGCGGTGTTGAAGGCTCGCGCATGTAGCGCACTGCTTTCGCT
CTCTCCACCGCTACCGCCGTCTCTCTCCAATCAAGTTTCCTTCTGCAACG
CTTTCTCCAACGCCAACGCCATATCTGTCTCTACCTCTCTCTCTCGGCCT
AACACGGCCGACTACCCACTGCCCCAAGAGACGCCAAACACGGGCTTGCT
GCACCCCGCGTAGTTTATCTTTCAGAGGGAGAAAGCGAGGAACCGACTGG
GATGGACAGCAACGAGAGCGTGTACGAAGCGGAGCGGGTCGAGTTTGATC
GTGCTACGACTGGCCACAGCGGCACCGGAGCAGCGGCACCGGAGCAGCGG
AACCGGAGCAGGCGGACGGCATCAAACCGTGGCGCACGGACAAACATCTC
TTGTGTTGTCAAATATTTTCCCTTTTTTTTCCTGAATACAGGTGTTGGGT
GTGTGTGAACACGTCTGACGTCACTGGTTTTGTAGAGAGACGCGGCAGAG
ATGGTGCGGATAACCCGGGTGCTTTAATTGTGTACCTGCATCGTGGAAGA
CCCCTTCAATGTGGAACGATTCCTTATCAGTGTCGATATTAACTCTGCTG
TGCCTAACACACATGATCTGGATAGATTCGGGTGATTGTCAATTGCAACG
ATGGCTTTGGTTGGGTGTTCTTCTTCGTTGTATGTCCACGGACTCATTCT
GACAGCACTTCAGACAGCAGGTGCATGCCCCGAGCTTGTGTACCATGCAC
CCATGGTGGTATTATTGCACACAGCACTTCAGACAGCAGTACGCTGTAGT
AGTCGACAAACATTCATTTGGTAAAATGCGGGACAAGGGGGGTGATGCTG
CTGCTGTAGTCGATTTGTAGTGTGTGGGCGTTTAGTTGAGTTGTGAGCAT
GCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCAGGCTTGCGAACCA
TATTCTTGCTAATAATGTGTGTGTTCTTTAGATCTTCTGATGGCTCCAGA
ATATTTGTGACCACGGACCGAGTCTTTGCTAGAATTTGGGATTAGCAACT
GA
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protein sequence of EsuBft811_2a-0001

>EsuBft811_2 ID=EsuBft811_2|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=501bp
MREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVT
SAPAGEGSSAGIPAAPTHPPFTPVVSINFGPAPTPSTAAQPPPAPRPTPS
PAPAPGQPPSAASPSSSATPAPGQTPSAASPSPSATPSPVQLPPPPPPPP
GPALPPLSAHAMRQLRPGKKAEGMKDPRLPGRTKSGTRHSTGLISMLDKN
TLVSMLETQSAVHEERREPGGAGTGEPGGAETGEQGGALEAVDLGAGGAG
LPLACATLLAKREDIDAILRDQRPPEQRSDLPHCQATDLRISKSYNEVLA
ALACELNLDLCHFDIEPAFVRSELEEDVYIRLPQGCGALSGMIVTLGKSL
YGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHWD
AAVGRRIQLAEVWRFMVPKVSKPCIPVFEDIQGAIQLAQNSISNSNSKHI
DVRHHFLRELVERKEISVINVPPPHQRADVLTKRLPKDAFAPHRDFVMNS
A
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mRNA from alignment at Scaffold_230:285020..288824-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft811_2a-0001 ID=EsuBft811_2a-0001|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3805bp|location=Sequence derived from alignment at Scaffold_230:285020..288824- (Ectocarpus subulatus male Bft15b)
ATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTA CTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCA AGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACG TCGGCGCCAGCCGGCGAGGGGAGTTCCGCTGGTATCCCCGCTGCGCCGAC GCATCCCCCGTTCACGCCGGTCGTCTCGATCAACTTCGGCCCAGCCCCGA CGCCTTCGACCGCCGCACAGCCGCCGCCAGCGCCCAGGCCCACGCCGTCG CCCGCACCCGCTCCTGGCCAGCCGCCCTCTGCCGCTTCGCCGTCATCGTC GGCGACCCCCGCTCCTGGCCAGACTCCTTCTGCCGCATCGCCGTCACCGT CGGCGACTCCATCTCCAGTTCAGCTACCGCCGCCGCCGCCGCCGCCGCCG GGCCCCGCGTTGCCCCCGCTCTCGGCCCACGCCATGCGGCAGCTTCGCCC GGGCAAGAAGGCCGAGGGTATGAAGGACCCGCGACTGCCAGGCCGCACGA AATCGGGCACGAGGCACAGCACAGGGCTCATCTCGATGCTGGACAAGAAC ACTCTGGTTTCAATGCTGGAGACCCAGAGCGCGGTGCATGAGGAGCGCAG GGAGCCGGGGGGAGCGGGGACCGGAGAGCCGGGGGGAGCGGAGACCGGAG AGCAGGGGGGAGCGCTCGAAGCCGTGGACCTGGGGGCTGGAGGAGCGGGC TTACCACTTGCATGTGCCACGCTCCTCGCCAAACGGGAAGACATCGATGC CATACTGCGCGACCAGCGCCCGCCGGAGCAACGCTCTGATCTCCCGCACT GCCAGGCGACCGACCTTCGCATCTCCAAGAGCTACAACGAGGTTATGGCG TCGGAGTACCGGCACCTCTGGGGCGACTCGATGAAAAGGGAGTTTTTCGG GTTGCTGGAAGTGGGGACTTTTACTCCGGCGAAGTAGCAGTCAGTGCAGA ACGCGATTATCGTGAAGTGGGTATTCAATTGGAAGGCAGATGAGTTTGGA TGGGTCACTAAGGTCAAGGCGAGACTTGTAGCGAGAGGTGATATGCAGAG AGAGTACATTGACTTTGTAGAGTTGTATGCGCCTACCGTTTCTGTTTCGT GTGTCAGGTGTTGGCAGCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTC ATTTCGATATTGAGCCAGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTA TACATACGATTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGTTAC ACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGCATG CAATGCTGAAGAGGTGTTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCC GATGCTTGTGTGTTTCGATTGATTGAAGGGGGGTGTGTGGTTTTGATTTT GGTAGTACATGTAGATGACAGTTTCTGCTGTGGGAGAGACGGAGAGATGT GACACGTTTTGCGCCGACCTTAACAAGTCCGTGCCGGTGAAGAACCTGGG AGAGTTGAGATAGTATTCCGGGTGCTTTTACGAGAAAAGTAAGGAGACTG GTAGGCTGACGATTTCTCAGCAGACTTTCACCGATGAGCATGCAGCAAAG TATGGAGTAGCAGGGAGTAAGAGCGTTCCCATGTCTTCGGGGGTCAAGCT TTCTGACTTTGATGCGGATGAAGAGGCGATAGATTTTCCGTTTCGTGAGC TAGTAGGATCTTTGATGTGGCTGGCGACTCAGACTAGGCTAGACAATGCG AATGCAAAGGGCAGAAGCTAGATATTGCGCGTCTCCGAAGCAGGTGCACT GGGATGCAGCGGTGGGTATATTAGGGTATGCCAAGAGGATGAGATACATG GGTGTTTCATTTCAGAGAGGTACGGTAGGTAGAAGGATTCAGCTTGCAGA GGTACGCTGATGCGGACTCTGCGAGCAAGGCAGCAGACCGTAGGTCGGTA TCAGGGGGGATAGTAACATGCGGAGGAGGCGCCGTGTCTTGGTGTTCCAG AACGCAGAAGTGTGTTACGCTTTCGACGACAAGCAGAGTATGTCGCGCTT GGCGATGTAGTGAAGGGGATTTTGTTTTTGAGGCAGGTTTGGCGATTTAT GGTGCCGAAGGTCAGCAAGCCGTGCATCCCAGTCTTTGAGGACATCCAGG GGGCGATTCAACTAGCGCAGAACTCCATCTCGAACTCGAACTCGAAGCAC ATTGATGTAAGGCACCATTTTCTCAGGGAATTGGTAGAGAGGAAGGAGAT TTCGGTGATCAACGTGCCGCCTCCGCACCAGCGTGCAGACGTTCTCACGA AGAGGTTGCCCAAGGATGCGTTCGCGCCTCACCGTGATTTTGTGATGAAT TCGGCATGAGTTTTTTTATTTTTTTGATGAGTTTGGTTTGGCATTCGATT TGATTGTTTTGCTTTCCGCGCTAAGTTCATATCACGCGCGATGCAGCAGT ATTCATGTTTCTTGGACGTGGTTTTCGTTTCTTATATTTTGGAAGTAATC TTGATGGCATATATTCAGGAAAAGACGTCTTTTGGTTGAGATATCCGGTA TTATTTCGAAATTTGCAGTGAAGATACTGTTGCGAGCAGGGGGGATGTTT GATATACTCGCAGCAGTCTCTAGACGTGAGGATCCTGGGGGATACGTGTT GGGAATTTCGTATGTTGATGGGTACCACCGGTGCAGATACAAGGACCCTT TTGGCCTTGGTTGCGGTGTTGAAGGCTCGCGCATGTAGCGCACTGCTTTC GCTCTCTCCACCGCTACCGCCGTCTCTCTCCAATCAAGTTTCCTTCTGCA ACGCTTTCTCCAACGCCAACGCCATATCTGTCTCTACCTCTCTCTCTCGG CCTAACACGGCCGACTACCCACTGCCCCAAGAGACGCCAAACACGGGCTT GCTGCACCCCGCGTAGTTTATCTTTCAGAGGGAGAAAGCGAGGAACCGAC TGGGATGGACAGCAACGAGAGCGTGTACGAAGCGGAGCGGGTCGAGTTTG ATCGTGCTACGACTGGCCACAGCGGCACCGGAGCAGCGGCACCGGAGCAG CGGAACCGGAGCAGGCGGACGGCATCAAACCGTGGCGCACGGACAAACAT CTCTTGTGTTGTCAAATATTTTCCCTTTTTTTTCCTGAATACAGGTGTTG GGTGTGTGTGAACACGTCTGACGTCACTGGTTTTGTAGAGAGACGCGGCA GAGATGGTGCGGATAACCCGGGTGCTTTAATTGTGTACCTGCATCGTGGA AGACCCCTTCAATGTGGAACGATTCCTTATCAGTGTCGATATTAACTCTG CTGTGCCTAACACACATGATCTGGATAGATTCGGGTGATTGTCAATTGCA ACGATGGCTTTGGTTGGGTGTTCTTCTTCGTTGTATGTCCACGGACTCAT TCTGACAGCACTTCAGACAGCAGGTGCATGCCCCGAGCTTGTGTACCATG CACCCATGGTGGTATTATTGCACACAGCACTTCAGACAGCAGTACGCTGT AGTAGTCGACAAACATTCATTTGGTAAAATGCGGGACAAGGGGGGTGATG CTGCTGCTGTAGTCGATTTGTAGTGTGTGGGCGTTTAGTTGAGTTGTGAG CATGCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCAGGCTTGCGAA CCATATTCTTGCTAATAATGTGTGTGTTCTTTAGATCTTCTGATGGCTCC AGAATATTTGTGACCACGGACCGAGTCTTTGCTAGAATTTGGGATTAGCA ACTGA
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Coding sequence (CDS) from alignment at Scaffold_230:285020..288824-

>EsuBft811_2a-0001 ID=EsuBft811_2a-0001|Name=EsuBft811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1506bp|location=Sequence derived from alignment at Scaffold_230:285020..288824- (Ectocarpus subulatus male Bft15b)
ATGCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTA
CTACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCA
AGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACG
TCGGCGCCAGCCGGCGAGGGGAGTTCCGCTGGTATCCCCGCTGCGCCGAC
GCATCCCCCGTTCACGCCGGTCGTCTCGATCAACTTCGGCCCAGCCCCGA
CGCCTTCGACCGCCGCACAGCCGCCGCCAGCGCCCAGGCCCACGCCGTCG
CCCGCACCCGCTCCTGGCCAGCCGCCCTCTGCCGCTTCGCCGTCATCGTC
GGCGACCCCCGCTCCTGGCCAGACTCCTTCTGCCGCATCGCCGTCACCGT
CGGCGACTCCATCTCCAGTTCAGCTACCGCCGCCGCCGCCGCCGCCGCCG
GGCCCCGCGTTGCCCCCGCTCTCGGCCCACGCCATGCGGCAGCTTCGCCC
GGGCAAGAAGGCCGAGGGTATGAAGGACCCGCGACTGCCAGGCCGCACGA
AATCGGGCACGAGGCACAGCACAGGGCTCATCTCGATGCTGGACAAGAAC
ACTCTGGTTTCAATGCTGGAGACCCAGAGCGCGGTGCATGAGGAGCGCAG
GGAGCCGGGGGGAGCGGGGACCGGAGAGCCGGGGGGAGCGGAGACCGGAG
AGCAGGGGGGAGCGCTCGAAGCCGTGGACCTGGGGGCTGGAGGAGCGGGC
TTACCACTTGCATGTGCCACGCTCCTCGCCAAACGGGAAGACATCGATGC
CATACTGCGCGACCAGCGCCCGCCGGAGCAACGCTCTGATCTCCCGCACT
GCCAGGCGACCGACCTTCGCATCTCCAAGAGCTACAACGAGGTGTTGGCA
GCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATATTGAGCC
AGCTTTTGTGCGTTCGGAGTTGGAAGAAGACGTATACATACGATTGCCGC
AGGGATGTGGAGCTCTATCTGGAATGATTGTTACACTAGGCAAGAGTCTG
TATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGTG
TTTGGTTGCGTTGGGATTTGAGCAGTGCATGGCCGATGCTTGTGTGTTTC
GATTGATTGAAGGGGGGTGTGTGGTTTTGATTTTGGTAGTGCACTGGGAT
GCAGCGGTGGGTAGAAGGATTCAGCTTGCAGAGGTTTGGCGATTTATGGT
GCCGAAGGTCAGCAAGCCGTGCATCCCAGTCTTTGAGGACATCCAGGGGG
CGATTCAACTAGCGCAGAACTCCATCTCGAACTCGAACTCGAAGCACATT
GATGTAAGGCACCATTTTCTCAGGGAATTGGTAGAGAGGAAGGAGATTTC
GGTGATCAACGTGCCGCCTCCGCACCAGCGTGCAGACGTTCTCACGAAGA
GGTTGCCCAAGGATGCGTTCGCGCCTCACCGTGATTTTGTGATGAATTCG
GCATGA
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