EsuBft789_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft789_6a-0001
Unique Name	EsuBft789_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_176	contig	Scaffold_176:117671..118897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LQY0
ProteomeId	EsuBft789_6
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	122
Hectar predicted targeting category	signal peptide
Evalue	9.63e-40
EggNOG OGs	COG5147@1\|root,KOG0048@2759\|Eukaryota
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-07_002050.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K09422,ko:K16599
Description	RNA polymerase II transcription regulator recruiting activity
COG category	ADK
BRITE	ko00000,ko01000,ko03000,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft789_6a	EsuBft789_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_176 117671..118897 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_6a-0001-exon	EsuBft789_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 117671..118897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_6a-0001-cds	EsuBft789_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_176 117671..118897 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_6a-0001	EsuBft789_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_176 117671..118897 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_176:117671..118897+
coding sequence from alignment at Scaffold_176:117671..118897+

spliced messenger RNA

>EsuBft789_6a-0001 ID=EsuBft789_6a-0001|Name=EsuBft789_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1227bp|location=Sequence derived from alignment at Scaffold_176:117671..118897+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCGAAGTCCCACGCTGTTGATCGTCGGCGCCCTTGAACGCGTTTG
CTTATTTGTTTGTTTATTTTTCTCTCCTTCCTCCCAGCACGCCGGCGGCG
GTGTTCTTGCAGGCGAAACAGCCACCCCCGTCCCCGGAAACCCGCCCAAG
CTAGCAGATCCCCTCGGAACCTTCAGCGCCGCAGCCGCCGCCACCGCCGC
CTCTGCCGCCTTCCACGCCGCCCCACCGTCCTCCGTGGGCCCCGCGGGAA
CGGCGCCGCTCCCGCAAGACGTGCCTGCTTCTTCCCAGCTGGCGGCGGCG
GCGGCGGCGGCGGCTCTGCACCAGGTCCCGGCCCCGTCTCACGGCCCGGC
CGAGACGACGATTGCGGCGATGCCTAATCCCCCCCCAGCAACAGTAGCAA
CCGCCGGCATCGCCTTGCCCGCAAGCGCTGCCGCCACGGCCGCCGCCGCC
GCGCCAGCAGCTACGGCGACGGCGGCGACGGCGCCGGCGCCGGCACCGGA
GGCTTCGATGAAGGCGGCGGAAGAAGCGGCGGAGGCCGCGGCGGCGATGG
CGGCGGCCATGGTGGAGCAGCAGACGGGCGGGGTGATCGACGTGGGCGCG
CCGCCGGACATGTTGTTCAATCCGGCGGCCGCGGGCGGCGACGGCGACGG
CGGTGGCGGTGGCAGCGGAGTAGCCCCTCCTCCCGCCGTAAACGTAATAT
CTCCCAGCTCTTTCACGATCCCGGGCGTGCCTCCGGCGATGGACACGCCT
CCCACGACAACGGAAGAAACGGCGGCGGGGGCGCAAACGGCTCCGGTGAC
GGCGGCGGAGGCAGCGCCGCCGCCGGCGGCGCCGGCGGCTGAGCCGGACT
CGATCGACGTGGGGACGACGCCGGACTATCCCCCGCACGTCGAGCTGCAG
ATGAGGGAGCAGCACGAGCGGGAGCGGGAGAAGCACCACCTGGCGGAGCA
GGTGCGCTCGGCCGCGGCGACGGCGGCGGCGACGGCGGCGGCGGCGAAAG
CGGCGGCGACCAAGGCGGCGGTGGAGCAGGCGCTGGCGGCGGAGGGCGGG
GGTGCGGTCGGGGGTTACCAGGGGTTCGGCGGCGCCGGAGGCGGAGGTGG
GTCCTCCTTGCCCCCGATGCCGTACGGGTTGCCGGCGTCTCGAGAGCAGG
CGGCGGCGGCGGTGGCGGCGATTGCCGCCCGACAGGAGGCACTGGCATCC
GGCGCCCACCCTAAGATCCCCATGTGA

protein sequence of EsuBft789_6a-0001

>EsuBft789_6 ID=EsuBft789_6|Name=EsuBft789_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=408bp
MYRSPTLLIVGALERVCLFVCLFFSPSSQHAGGGVLAGETATPVPGNPPK
LADPLGTFSAAAAATAASAAFHAAPPSSVGPAGTAPLPQDVPASSQLAAA
AAAAALHQVPAPSHGPAETTIAAMPNPPPATVATAGIALPASAAATAAAA
APAATATAATAPAPAPEASMKAAEEAAEAAAAMAAAMVEQQTGGVIDVGA
PPDMLFNPAAAGGDGDGGGGGSGVAPPPAVNVISPSSFTIPGVPPAMDTP
PTTTEETAAGAQTAPVTAAEAAPPPAAPAAEPDSIDVGTTPDYPPHVELQ
MREQHEREREKHHLAEQVRSAAATAAATAAAAKAAATKAAVEQALAAEGG
GAVGGYQGFGGAGGGGGSSLPPMPYGLPASREQAAAAVAAIAARQEALAS
GAHPKIPM

mRNA from alignment at Scaffold_176:117671..118897+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft789_6a-0001 ID=EsuBft789_6a-0001|Name=EsuBft789_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1227bp|location=Sequence derived from alignment at Scaffold_176:117671..118897+ (Ectocarpus subulatus male Bft15b)
ATGTACCGAAGTCCCACGCTGTTGATCGTCGGCGCCCTTGAACGCGTTTG
CTTATTTGTTTGTTTATTTTTCTCTCCTTCCTCCCAGCACGCCGGCGGCG
GTGTTCTTGCAGGCGAAACAGCCACCCCCGTCCCCGGAAACCCGCCCAAG
CTAGCAGATCCCCTCGGAACCTTCAGCGCCGCAGCCGCCGCCACCGCCGC
CTCTGCCGCCTTCCACGCCGCCCCACCGTCCTCCGTGGGCCCCGCGGGAA
CGGCGCCGCTCCCGCAAGACGTGCCTGCTTCTTCCCAGCTGGCGGCGGCG
GCGGCGGCGGCGGCTCTGCACCAGGTCCCGGCCCCGTCTCACGGCCCGGC
CGAGACGACGATTGCGGCGATGCCTAATCCCCCCCCAGCAACAGTAGCAA
CCGCCGGCATCGCCTTGCCCGCAAGCGCTGCCGCCACGGCCGCCGCCGCC
GCGCCAGCAGCTACGGCGACGGCGGCGACGGCGCCGGCGCCGGCACCGGA
GGCTTCGATGAAGGCGGCGGAAGAAGCGGCGGAGGCCGCGGCGGCGATGG
CGGCGGCCATGGTGGAGCAGCAGACGGGCGGGGTGATCGACGTGGGCGCG
CCGCCGGACATGTTGTTCAATCCGGCGGCCGCGGGCGGCGACGGCGACGG
CGGTGGCGGTGGCAGCGGAGTAGCCCCTCCTCCCGCCGTAAACGTAATAT
CTCCCAGCTCTTTCACGATCCCGGGCGTGCCTCCGGCGATGGACACGCCT
CCCACGACAACGGAAGAAACGGCGGCGGGGGCGCAAACGGCTCCGGTGAC
GGCGGCGGAGGCAGCGCCGCCGCCGGCGGCGCCGGCGGCTGAGCCGGACT
CGATCGACGTGGGGACGACGCCGGACTATCCCCCGCACGTCGAGCTGCAG
ATGAGGGAGCAGCACGAGCGGGAGCGGGAGAAGCACCACCTGGCGGAGCA
GGTGCGCTCGGCCGCGGCGACGGCGGCGGCGACGGCGGCGGCGGCGAAAG
CGGCGGCGACCAAGGCGGCGGTGGAGCAGGCGCTGGCGGCGGAGGGCGGG
GGTGCGGTCGGGGGTTACCAGGGGTTCGGCGGCGCCGGAGGCGGAGGTGG
GTCCTCCTTGCCCCCGATGCCGTACGGGTTGCCGGCGTCTCGAGAGCAGG
CGGCGGCGGCGGTGGCGGCGATTGCCGCCCGACAGGAGGCACTGGCATCC
GGCGCCCACCCTAAGATCCCCATGTGA

Coding sequence (CDS) from alignment at Scaffold_176:117671..118897+

>EsuBft789_6a-0001 ID=EsuBft789_6a-0001|Name=EsuBft789_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1227bp|location=Sequence derived from alignment at Scaffold_176:117671..118897+ (Ectocarpus subulatus male Bft15b)
ATGTACCGAAGTCCCACGCTGTTGATCGTCGGCGCCCTTGAACGCGTTTG
CTTATTTGTTTGTTTATTTTTCTCTCCTTCCTCCCAGCACGCCGGCGGCG
GTGTTCTTGCAGGCGAAACAGCCACCCCCGTCCCCGGAAACCCGCCCAAG
CTAGCAGATCCCCTCGGAACCTTCAGCGCCGCAGCCGCCGCCACCGCCGC
CTCTGCCGCCTTCCACGCCGCCCCACCGTCCTCCGTGGGCCCCGCGGGAA
CGGCGCCGCTCCCGCAAGACGTGCCTGCTTCTTCCCAGCTGGCGGCGGCG
GCGGCGGCGGCGGCTCTGCACCAGGTCCCGGCCCCGTCTCACGGCCCGGC
CGAGACGACGATTGCGGCGATGCCTAATCCCCCCCCAGCAACAGTAGCAA
CCGCCGGCATCGCCTTGCCCGCAAGCGCTGCCGCCACGGCCGCCGCCGCC
GCGCCAGCAGCTACGGCGACGGCGGCGACGGCGCCGGCGCCGGCACCGGA
GGCTTCGATGAAGGCGGCGGAAGAAGCGGCGGAGGCCGCGGCGGCGATGG
CGGCGGCCATGGTGGAGCAGCAGACGGGCGGGGTGATCGACGTGGGCGCG
CCGCCGGACATGTTGTTCAATCCGGCGGCCGCGGGCGGCGACGGCGACGG
CGGTGGCGGTGGCAGCGGAGTAGCCCCTCCTCCCGCCGTAAACGTAATAT
CTCCCAGCTCTTTCACGATCCCGGGCGTGCCTCCGGCGATGGACACGCCT
CCCACGACAACGGAAGAAACGGCGGCGGGGGCGCAAACGGCTCCGGTGAC
GGCGGCGGAGGCAGCGCCGCCGCCGGCGGCGCCGGCGGCTGAGCCGGACT
CGATCGACGTGGGGACGACGCCGGACTATCCCCCGCACGTCGAGCTGCAG
ATGAGGGAGCAGCACGAGCGGGAGCGGGAGAAGCACCACCTGGCGGAGCA
GGTGCGCTCGGCCGCGGCGACGGCGGCGGCGACGGCGGCGGCGGCGAAAG
CGGCGGCGACCAAGGCGGCGGTGGAGCAGGCGCTGGCGGCGGAGGGCGGG
GGTGCGGTCGGGGGTTACCAGGGGTTCGGCGGCGCCGGAGGCGGAGGTGG
GTCCTCCTTGCCCCCGATGCCGTACGGGTTGCCGGCGTCTCGAGAGCAGG
CGGCGGCGGCGGTGGCGGCGATTGCCGCCCGACAGGAGGCACTGGCATCC
GGCGCCCACCCTAAGATCCCCATGTGA