EsuBft789_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft789_4a-0001
Unique Name	EsuBft789_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_176	contig	Scaffold_176:100757..101827 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft789_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	107
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft789_4a	EsuBft789_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_176 100757..101827 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_4a-0001-exon	EsuBft789_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 100757..101827 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_4a-0001-exon	agat-five_prime_utr-13860	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_176 100757..100778 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_4a-0001-cds	EsuBft789_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_176 100779..101024 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_4a-0001-exon	agat-three_prime_utr-21501	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_176 101025..101827 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft789_4a-0001	EsuBft789_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_176 100779..101024 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_176:100757..101827+
coding sequence from alignment at Scaffold_176:100757..101827+

spliced messenger RNA

>EsuBft789_4a-0001 ID=EsuBft789_4a-0001|Name=EsuBft789_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1071bp|location=Sequence derived from alignment at Scaffold_176:100757..101827+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGAACCACGTCGACAGAATCATGCCTTCATCCAAACCATCCGTCATTG
TCAGCGCCCACAGAGCCGCCAGCGTGAACCAGGTAGACAAAATCAAAGTC
GGGCTCGCTCTCTACCACCACCACCTGCTGCTGCACGACCGGGCCTCCGC
TGCCATTGCCGCCGATCCCGCAGCCACCGCTGGCGCTACGGCCGCTATTC
TCGCCGCGGCTGCCATGAAGAGCACGGGGTGGCGAGCGGCGCAGTTCCGC
CATATATGGCCGTACTGACTATGGGCGCAGCACGTACCCTCGAGCCTGCG
GGGTGCGGTACATCCTCCGACGTGATGGCCGTTCCTGCCACACCCGATGC
AATGGTATACCGTGCCCATCGGCGTGCCGGGTGGCGGGGGTGATTTCGGC
TGGAAATAAGCAGCGTTGTTCCGGCAGTCATATACCCCACCGATTCCGCG
CTGCGGCGGCTGCTTTTGCTGCCGCGCCGGCTGCTAATAATGCTGACTCT
GATTGAAAACGCAGTGTTGATCCTGCGGACAGACGAACCACCACGAGAAC
ACGGCTGCAACTGCGATGGATGCTGGGATTGAGCACCCCATCGCTGTTGT
TGTTGTTGTTGCTGCTGCTGCTGCCTAAGCCTTTGTACCTCATACTTGGC
AGTCTCTGTATTGCGCCGCCTCTCCCCTGTCTCAGCGCCAAAATCTGCAG
CCTCCTGCTCCGAGCAAAGCCACATCATCCTATCTCGACGCCCCTCTCCA
AAAAATCTACTACATGATACCTATCCCGTGCCCTGCTGCCTCAGCGCTCA
AGAGCTGCCCCAGCTATGCACCCTCTGCTGTCCCGGTCCCCAATGGTCAC
CGTCCCAGCTATATACCCACTGCTGTGCTCTCCGTGCCCGTCGGCCACGT
CCCAGCTTCGCTATGCAAATCGCGTCCGTCGCCCGATTGGCCCGAGTCCC
ACCGTTCAGACGCCAATACCCCGCTACCAACGATGCACGCGGCTCGCCGC
TGCTGGGCGCCTCGCACGGCTGGCTGCTCCGCATCTTATTATGCATCTGG
TGTTTACCCCAACCGGTCGAA

protein sequence of EsuBft789_4a-0001

>EsuBft789_4 ID=EsuBft789_4|Name=EsuBft789_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MPSSKPSVIVSAHRAASVNQVDKIKVGLALYHHHLLLHDRASAAIAADPA
ATAGATAAILAAAAMKSTGWRAAQFRHIWPY

mRNA from alignment at Scaffold_176:100757..101827+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft789_4a-0001 ID=EsuBft789_4a-0001|Name=EsuBft789_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1071bp|location=Sequence derived from alignment at Scaffold_176:100757..101827+ (Ectocarpus subulatus male Bft15b)
TGTGAACCACGTCGACAGAATCATGCCTTCATCCAAACCATCCGTCATTG
TCAGCGCCCACAGAGCCGCCAGCGTGAACCAGGTAGACAAAATCAAAGTC
GGGCTCGCTCTCTACCACCACCACCTGCTGCTGCACGACCGGGCCTCCGC
TGCCATTGCCGCCGATCCCGCAGCCACCGCTGGCGCTACGGCCGCTATTC
TCGCCGCGGCTGCCATGAAGAGCACGGGGTGGCGAGCGGCGCAGTTCCGC
CATATATGGCCGTACTGACTATGGGCGCAGCACGTACCCTCGAGCCTGCG
GGGTGCGGTACATCCTCCGACGTGATGGCCGTTCCTGCCACACCCGATGC
AATGGTATACCGTGCCCATCGGCGTGCCGGGTGGCGGGGGTGATTTCGGC
TGGAAATAAGCAGCGTTGTTCCGGCAGTCATATACCCCACCGATTCCGCG
CTGCGGCGGCTGCTTTTGCTGCCGCGCCGGCTGCTAATAATGCTGACTCT
GATTGAAAACGCAGTGTTGATCCTGCGGACAGACGAACCACCACGAGAAC
ACGGCTGCAACTGCGATGGATGCTGGGATTGAGCACCCCATCGCTGTTGT
TGTTGTTGTTGCTGCTGCTGCTGCCTAAGCCTTTGTACCTCATACTTGGC
AGTCTCTGTATTGCGCCGCCTCTCCCCTGTCTCAGCGCCAAAATCTGCAG
CCTCCTGCTCCGAGCAAAGCCACATCATCCTATCTCGACGCCCCTCTCCA
AAAAATCTACTACATGATACCTATCCCGTGCCCTGCTGCCTCAGCGCTCA
AGAGCTGCCCCAGCTATGCACCCTCTGCTGTCCCGGTCCCCAATGGTCAC
CGTCCCAGCTATATACCCACTGCTGTGCTCTCCGTGCCCGTCGGCCACGT
CCCAGCTTCGCTATGCAAATCGCGTCCGTCGCCCGATTGGCCCGAGTCCC
ACCGTTCAGACGCCAATACCCCGCTACCAACGATGCACGCGGCTCGCCGC
TGCTGGGCGCCTCGCACGGCTGGCTGCTCCGCATCTTATTATGCATCTGG
TGTTTACCCCAACCGGTCGAA

Coding sequence (CDS) from alignment at Scaffold_176:100757..101827+

>EsuBft789_4a-0001 ID=EsuBft789_4a-0001|Name=EsuBft789_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_176:100757..101827+ (Ectocarpus subulatus male Bft15b)
ATGCCTTCATCCAAACCATCCGTCATTGTCAGCGCCCACAGAGCCGCCAG
CGTGAACCAGGTAGACAAAATCAAAGTCGGGCTCGCTCTCTACCACCACC
ACCTGCTGCTGCACGACCGGGCCTCCGCTGCCATTGCCGCCGATCCCGCA
GCCACCGCTGGCGCTACGGCCGCTATTCTCGCCGCGGCTGCCATGAAGAG
CACGGGGTGGCGAGCGGCGCAGTTCCGCCATATATGGCCGTACTGA