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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft785_4 |
Protein domains | SignalP-noTM |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | SIGNAL_PEPTIDE |
Protein domains | IPR027417 |
Protein domains | SIGNAL_PEPTIDE_H_REGION |
Protein domains | SignalP-TM |
Protein domains | SIGNAL_PEPTIDE_C_REGION |
Protein domains | SIGNAL_PEPTIDE_N_REGION |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 10 |
Length | 148 |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | P-loop containing nucleoside triphosphate hydrolase |
Ec32 ortholog | Ec-26_001580.1 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft785_4a-0001 ID=EsuBft785_4a-0001|Name=EsuBft785_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1480bp|location=Sequence derived from alignment at Scaffold_647:113959..120695+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCGCGACATAGAGGCGGAGAGACCCAACATCAAACGACCGTCAACACGC CTTCACGCCTTCGTCCTCGACAAGACTTCCCTGTCATCCCTACCCGCCCT TCCTCCCACTATGATGAACCAGCGGGTCCGTCGGCCGCCATACGCCATGG GGACAATTTTGCGGAGACTAGTTCTGGTGTGCGTTGCAACTGCCTGCACC GGCCGTGACTCGAGCGACCCCCGTGTTCCGGAGACCGAAGCCGAAGCGAT GCCGGGTCGGCGGATGAACCATCCCGCCCGGATCCACGCCAGGAACGCAA AGATTCTGGCCCAACAGAGCGTCTTGAGGGACCAGGCTAATATTACGGCT GAACCAGTACCGGAGGAGGCAGATTCGATCAAGCCTGTCGCCATACCATT CAAGCAAAAACCCGATGAATTCGGGGAACGTGGACACGGGCTATCTCTCG TCGCCCTCGGCGAACCGAAAAGCGGCACGACTTGGCTGGGAAGAATGGTT CCGTCGTTGGCTATCGAGCTATGCGGGAGCGAAAACAACCCGTGGTGCCA GCTTGGGGGAGTCGAAGTCTTCCCACATCCTCCTGCGCCGTCTTACGAGT TCGAATTGCTCAACATATCAACCCCGACCGGCAGGCCAAGACTTTTCCTC CACTTTCAGGGGCGCATTAAGCACATCATCCCGGGGATGGATCTCGGAAT TCCTCTCAAGTGTCGCAATGGAGGACGACTGCACAAGGAGGGTTTCATGG ATCTCCAGCCGTGCGATTCAGGAGAATCACCTACGAGGGAGCGGCTCGAA TCTTGCCTCTGGAATACGACTAAACGCTGTGTTAACTACATGACGAGTAC GGACCCGGCCGTTCGGCGATCAATCGTCCTCTTTCGTGACCCACGGGACG TTGTGATATCGGAGTACAAGATGCGGACCCAGGTGTTTCATAGGGATCCG TGGATCGCGAGCCTTTCGCTGGAGGAGTTCGTTCAGTTTAAGTTTGAGGT GCTAGTCTCGTGGCTTCACCAGCGATACATGTGGCACACAGGCGATCTGA TGGGCCCGTCATCCCACGTCGAGTTCTACGACGAGCTACAGAAGAGCCCT GTTGGATTCGTCGGAATCGCTCGTCTCATGGGCCTCGAGTGCTCCGAAGA CCAGGCGTACAAGGTGTGGAAAGCTCACAAGCAGGCCTCTCCCAACGGAG GCTTCGCCACCCGGCTCGGGGAAGCGACTATTCAGTTCATGAACGCGACG ATGGCGAGGCTGCTCCCTCCATCCGTAGCGATTCAATGGGGCTTAACGCC GACCGAGCTCTGAAGAGTAGCTGATACCCAGTTTTTTTGGCATTGGTGAT GTTTGTAATTCCTGTGAGTGGGCTGCAGCTCTCTAGTCATGTCTTTGGGA AATCAGCTTGAGAAGTGGACAGGTAACAGCCAATGGGCTTTGCTTTTTTT GCATCGGAGGGACACGTAAATGTAAACTTA back to topprotein sequence of EsuBft785_4a-0001 >EsuBft785_4 ID=EsuBft785_4|Name=EsuBft785_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=400bp
MMNQRVRRPPYAMGTILRRLVLVCVATACTGRDSSDPRVPETEAEAMPGR RMNHPARIHARNAKILAQQSVLRDQANITAEPVPEEADSIKPVAIPFKQK PDEFGERGHGLSLVALGEPKSGTTWLGRMVPSLAIELCGSENNPWCQLGG VEVFPHPPAPSYEFELLNISTPTGRPRLFLHFQGRIKHIIPGMDLGIPLK CRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTTKRCVNYMTSTDPA VRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVS WLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAY KVWKAHKQASPNGGFATRLGEATIQFMNATMARLLPPSVAIQWGLTPTEL back to topmRNA from alignment at Scaffold_647:113959..120695+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft785_4a-0001 ID=EsuBft785_4a-0001|Name=EsuBft785_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6737bp|location=Sequence derived from alignment at Scaffold_647:113959..120695+ (Ectocarpus subulatus male Bft15b) TGCGCGACATAGAGGCGGAGAGACCCAACATCAAACGACCGTCAACACGC
CTTCACGCCTTCGTCCTCGACAAGACTTCCCTGTCATCCCTACCCGCCCT
TCCTCCCACTATGATGAACCAGCGGGTCCGTCGGCCGCCATGTGAGTGAG
GTAAAAGCAGTCAGTTCCGAGGCGCGCACTATGAGTGGTTATGACGCGAG
TGAGTTTGTACATGTGGGAGTGCTACATTCGCCAAGTTGTTTTGCATTTT
GTATGGTAAGGAGGCTTCAATGTTGGTTTCGGGCCGCACGTGCACCATCG
TTGTGGAGGCTGCGACCCTCTGCAATCACTAAAGTCCACGGCCTGAGTGT
GAGAGTATCATCCGAATTTCATCCGTGGTTGGGCATCGTGATCGACGGTC
TCGCGTCTCGCGTGATCGCTGGAGGAAAATAGCTCTTCAGATCTCCGCCT
GCTTCCGCTTTGTCTTTTTACCACGCATGCCTCGGAGCTGAAAGCTTTTT
TCTTTGTAATGTAATCTAGAGCGCCATTGTCCGCATCACCGCAGTTGTCG
ATGGAGTAGTTTGACTTGAAACCGAAGTGTTCCGACCTCCGTCGAGTACC
ATTCAGGTTCGTATAGACTACCTACACACACATCGGTTTACGGTTCTTCC
CATTTGATTCGTACCTACCTTTGGAGTGGGACGGCAACGAAAAATATTAC
CCCGCGTTCACGTGCATGCCAACGGACGTGTTGGCTGCGACGGAAAGACC
CGTTTCGGCTCGGGCTGTTGGGGTTGTGGGCGGACGTGGGGAGCCATTTA
TGTGCAGCAGTAGTGCAGTAGTGTCCATCGGTGCGGACCCGATTCTTTCT
TGTGGTCATGAATATCAGCAGCGTGAACGAACCGCCGGTATTAGTTTTAA
CTAGACTATAGATGTATATCATACATGGTTGTACAGCAGTACCTCAAGCA
ACTCGCATCCCAGGCTGGTTGTCCGCTTCTTGTGCCGTCTTCGTCTAGAA
ATATCGGAAACCTGCATCATCTGCTGCATTCATGCAAAACTGCTGTAGTG
AATGTTTGATTCCCGTCGCGGCGTAATCCAATGGCAGCTGTTTGTTGTCG
TCGATGGGTATGTGGGTTTCACGTGCCTCGCGTGTTGTGTTTCTTCTTCG
TGGATGCTGTGGAATCGTACTTGGGCAATGTTGTTCTCTCCGAAGTCCCG
GTGTCCTCTCGCCTGTGCCATATAGACCAGATAGTCGTTACAGACGAAGC
GCATACGCGTACCACCTACCGCTAGAAAGGGGCCACCGTTCATTACGGCC
GCCAGCAAAGGGCCACCTTTCGTTATGGCGTTTCCGAGTATTAGTTTCAT
GTCTTGCCGCCTCCGCCAAAGCCGTTGCCGCTGACAAGCGTAGTACTGCC
TACACTTCTGTAAATAGTACTGCCAAAACAATCACCAGCACATGGCATTG
CTGTCGAAGGATTACAGCCATATTCAGATTTTACCGCGTCCGAAGTCGTT
ACCACCAAACAACGCAATACCGCCTACCACCGAAAAACATGCGGCGGTAT
GGCGTTACCATTGGAACAAACGCGTTACCTTACCGAATAAACCCGTGGTT
GGTTGCAAAGCATTCATGATTGCCGAGGATGGACTCTCGGTGTGGGTGTG
GGGATAGCGAAATAACTCGTCTGGGGCTTCTGAGGGAAAAATCAGGATTA
ATATGGAAAGTTCCCGTCAATGTATAGTCTCAAAATCTTGGGTAATTTGT
CTGCAGAGGGTGCAACCTTTGGCTGGGCGAGGCGTGTATTGTCAGTCGTC
GATGACATTTCGTGAGGACTAGTCTACCGCTGTAGTCACCCCTCTCTTTG
CGAATAGGAACAGCACATCTGTTTACCGGCCCGAAATATATTTATCGGAA
TTCACGCTGTTTCTTTCGCCGTTTGTTGCTTCCAGCATAATACGTCACAA
AGCGGTAAACTTGATTTATCTTGTTCCTACTCAATGTGTCGTCGGAAACT
AGTATTTTATCATTTTGTTTCCTCCTTTTTGTGTTCATCTGTCGCCTTAG
ACGCCATGGGGACAATTTTGCGGAGACTAGTTCTGGTGTGCGTTGCAACT
GCCTGCACCGGCCGTGACTCGAGCGACCCCCGTGTTCCGGAGACCGAAGC
CGAAGCGATGCCGGGTCGGCGGATGAACCATCCCGCCCGGATCCACGCCA
GGAAGTAAGTGGGAATCGTGACTCGTCCGCTGGAAGCCCCGCTTACTCGT
GTGTATTTTCTGTGTTCGTTCGTGGTCATGGATGTAACATGCGTGACTAG
GAAGGTGCATCGCGGTGGAAGGCGGGCGCTGTTAGTTAATATGTACGCGA
TCTTGTTGCCACCGAAAGTTGATGATGTGTGTTGACTAATAGTTTCAGGT
TGACCCAGAAGCTCGTCCAACAGGATCGCGGCGCGTTGTAGACGCACATG
AATATGCATCATTGGAGAAGCCTGAGCCATCTTCATGCAATCGTTGTTCT
ATCCCATTAAACGAAGGACGTCTTCGTGTATACTCATGAATGGGGGAGAA
CGTTCCAGAGAGCCGGCGAGGTCGACGTAGGGCCGGCGCTTGGAGCCACA
GCGTGCATGCCGTGTTGTCGTTAACCAGCCATGTGTCAACCGAATCAACA
GACGAACGTACGGTTCTTGGCCGGTTGTTTGAGTTGTTCCAAGAACTTTG
CCAACGTAGTGACTTACCTGACGGCCTAGCATTACCTGGAATACCAACGT
CGTCGATGGCAAGTCTGCACCCGTTATGCACCGTATACACGTTTTTTGTT
TGGCTTGATCTTCGTCCACAGCGCAAAGATTCTGGCCCAACAGAGCGTCT
TGAGGGACCAGGCTAATATTACGGCTGAACCAGTACCGGAGGAGGCAGAT
TCGATCAAGCCTGTCGCCATACCATTCAAGCAAAAACCCGGTTAGTTTAT
GCGGTCGTTGGTTTCCCTCGCTGGGAATTCCCTATCTCATTTGTTTCGTT
GACAAAACGAGTGTGCCTAGTGTTTGGTTGTCATAAAAAGCGATTTTTTT
TTGTTGTTATTTCCAGTTTTCGTCCGGTTTATTTGGAGCCTTGCTGAGTA
CCTTGGTCTGGTGCAGGTGCCCGCTTCGTGCCCATCAAGTCGGGATGAGT
ACGTTTGGCGGTAAAATCCCGCGAGATTCAAACCCTCACGCGGACGATTT
GATGCTGGGGCCTCGTGTTTGCTTTTTTTCTTGTCTGTCTTCACACGCTC
GACAAGCTCAACAGCGGACAAGCAACAAAAACGCGTGTTTTCGTTGACGA
ACACCTCACTCAACAGGTTGATCAATTCACAAACACCCTTTTATAGCCCC
GATTTTTCGACAGTCATCATTGTGGTCGATAGCGTGCTGCTTGGTCGTGT
TGTTTTCGCTGAGTGCATCCGTTCTCGTTTGATTATTGCGCGATCAGATG
AATTCGGGGAACGTGGACACGGGCTATCTCTCGTCGCCCTCGGCGGTAAG
TGCCTTACCTTAGGAACAGTGGTACGCAAGGTGGACGTTAAACGGAGTAC
GTTGTTCACCACCAAAGGCACTTGGCTCGCAACAGGTAGTAGCCCGAATT
ATTTTGCCGTCTACATGTACGCGGCAAGTCTCCTTTGCACGCTTTTCGTG
TTGTTTTATTAAGGCCGAACGATGTTTTCTGCACCCTGTTCTCATGTTCT
CGCTCTGACGCCAATCTTCAGAACCGAAAAGCGGCACGACTTGGCTGGGA
AGAATGGTTCCGTCGTTGGCTATCGAGCTATGCGGGAGCGAAAACAACCC
GTGGTGAGAAGATTGCCCTCGCTTGCTGCCATGTGATCGAGGGGATGCGA
GGACCTTGCAAGGAGCTAGATGGCCGATGGGCGTTGTTTACGAGCCGGAT
TGCTTTGTTTTCGAAACATTCGAAGTGGCATTTTCAACTACAGCAGCACG
TGTCCCGTTGTTTTGTCGTGCCTCGTGAGTTCTGCGCAAGTCCACCGCTC
CGTAACAGAAAGCTAGTGGCCAAAATGACTGTTGTTTCTGTTCCATCCTT
ACTTCGCGGATGACGCCCGACTGAAAGTTTGGTGTTCGCGCGGATCATCT
TCGAAGAACGTTTGCAGCCGGAACTCCTCATGATGTACAGAGTTCTGTCT
CGGTCTTCATCCTGCTCGATGACTCGTTCCGAATCTCGAGATGCCCGACG
TGTGCCCGGAAGCGTGCCGACGTTTTGTGTGTTTTGGGCGACCATGTAGG
AAACCTTTGTGGTGATTGCAGGCTGTCTTTCCTCGTTTGCCGGAGGCCGG
TTTTCGGTTCTGCTCGACGGGCCGAGTTTTAGAATTCCTCTTTGAAAACA
TTGCCCAGAACTAGACATGGCAGCCTTGCCCAGATTTTGATGCTCTCGTC
CCGAAACTCCGCGACGTATGTTGCAGGTGCCAGCTTGGGGGAGTCGAAGT
CTTCCCACATCCTCCTGCGCCGTCTTACGAGTTCGAATTGCTCAACATAT
CAACCCCGACCGGCAGGCCAAGACTTTTCCTCCACTTTCAGGTGTGGCGA
TAGCACTGTTATTTCTTGATTGACTGATAGGACGCATGGGACAGTCATGA
GATGTCCCATGGGCCGTCCCTCGCGGTCCCATGGGAAATACTTGGACACC
AGGTGGGCTGCCAACGACACACGTGCCACGCCTCATTGTAAACATTGAAA
ATAACGCAAGCAGTACCAGAACCAGAGAGATGTACTCACTGCTCTCAGTT
GCGGTAGCGACGCAAAGGGACATCCTCGGCAATCGCAAATCGATGTAGTT
GAATGCACATGATGTTGGACATGTGTAACGCTGCTTTGGTTTTAGGTACT
TGCTCACTACCGGTGACGACTCTGTCAATTGCGAACGATTGTGTTGTACC
TGCCTGAGTCTCCTCTCAAGTGGAAAACCATCACACAAAAACCCAGCCTG
TTGTTCCAAGCGAGAACGTTGGGTGCATCCCGGACAACTGAATGTACCAT
ATGACACCTCATTTTTTTACCACTTTTGGGAACCAACCATGACGTCATCA
AGCTCTGGTGGAGGGCGGCGGGTTCGCAGGTAGGCTGACAGTTGCGAATA
AGTACCACCTTTTTCGCTGCCTCTGGTGCGTCTCGTCTCTTCGCGAACAG
GGGCGCATTAAGCACATCATCCCGGGGATGGATCTCGGAATTCCTCTCAA
GTGTCGCAATGGAGGACGACTGCACAAGGAGGGTTTCATGGATCTCCAGC
CGTGCGATTCAGGAGAATCACCTACGAGGGAGCGGCTCGAATCTTGCCTC
TGGAATACGACTAAACGCTGTGTTAACTACATGACGAGTACGGACCCGGC
CGTTCGGCGGTGAGCCGATTTGTTGGACGATGGGCGGGTTGTTTCATGAA
TTCGAAATACTAATGATTGGTCTCCCATGTGATGCTTGTGGTTCCTTACG
ACGGGCCAAATGTGTGACATATTACCAAGTACACCATTGAGTCGTATCGC
GTTGTGGTTTGATTGGATTTCGCACGGTAATCAAAGTTGACGTCGAAAAA
CTAAACCTAATCCATTCGTGCTCAATAAATCCTTCAGATCAATCGTCCTC
TTTCGTGACCCACGGGACGTTGTGATATCGGAGTACAAGATGCGGACCCA
GGTGTTTCATAGGGATCCGTGGATCGCGAGCCTTTCGCTGGAGGAGTTCG
TTCAGTTTAAGTTTGAGGTGAGCCACATCACAACCGCAGCGTGTTGCGTT
GTCGTGAGCTTGCCCCCGCATGGAGGATGTCAGACGGTGCACATACAATA
CACGAACTCGATTTGTTCTTCCGGGTCGTTTCGCGATGAACGTGAACTCC
CTCCACTCGAAGTCAGTCGGTGTTGATGTTGAGAAATGGAAACTGCTCCA
CTGCTGTTTGTCGCCTAAGACGTTAGACCTTCGACGTGTAGATATCTTGC
ACATGGGCAACTCTTATTTATCGGCCGAGGTTCACGGTCTCGTTTTTTCC
GCACTGCTCCTGTCCATGCAGGTGCTAGTCTCGTGGCTTCACCAGCGATA
CATGTGGCACACAGGCGATCTGATGGGCCCGTCATCCCACGTCGAGTTCT
ACGACGAGCTACAGGTGCCAATTTTCATCATTTCCCGACTTGTGTCCGTC
GTCCTTCGAAGCACCACCACGTCAAGTGTAACCCCTTGTAAGAGCAGGTC
ATTCGAGTTCGTCAGAAGTATAGAACCCCTTGTTTCGAATGTTGGTGAAC
TTGTCAAGATAGCCGAGCCGTTGCCGTGTTTCGGCTATTACGTGCTCATC
ATCGAAATCTCCCTTTCCTTCCTTCCCCACGTTGACCTGCTCGAGCAGAA
GAGCCCTGTTGGATTCGTCGGAATCGCTCGTCTCATGGGCCTCGAGTGCT
CCGAAGACCAGGCGTACAAGGTGTGGAAAGCTCACAAGCAGGCCTCTCCC
AACGGAGGCTTCGCCACCCGGCTCGGGGAAGCGACTATTCAGTTCATGAA
CGCGACGATGGCGAGGCTGCTCCCTCCATCCGTAGCGATTCAATGGGGCT
TAACGCCGACCGAGCTCTGAAGAGTAGCTGATACCCAGTTTTTTTGGCAT
TGGTGATGTTTGTAATTCCTGTGAGTGGGCTGCAGCTCTCTAGTCATGTC
TTTGGGAAATCAGCTTGAGAAGTGGACAGGTAACAGCCAATGGGCTTTGC
TTTTTTTGCATCGGAGGGACACGTAAATGTAAACTTA back to topCoding sequence (CDS) from alignment at Scaffold_647:113959..120695+ >EsuBft785_4a-0001 ID=EsuBft785_4a-0001|Name=EsuBft785_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1203bp|location=Sequence derived from alignment at Scaffold_647:113959..120695+ (Ectocarpus subulatus male Bft15b) ATGATGAACCAGCGGGTCCGTCGGCCGCCATACGCCATGGGGACAATTTT GCGGAGACTAGTTCTGGTGTGCGTTGCAACTGCCTGCACCGGCCGTGACT CGAGCGACCCCCGTGTTCCGGAGACCGAAGCCGAAGCGATGCCGGGTCGG CGGATGAACCATCCCGCCCGGATCCACGCCAGGAACGCAAAGATTCTGGC CCAACAGAGCGTCTTGAGGGACCAGGCTAATATTACGGCTGAACCAGTAC CGGAGGAGGCAGATTCGATCAAGCCTGTCGCCATACCATTCAAGCAAAAA CCCGATGAATTCGGGGAACGTGGACACGGGCTATCTCTCGTCGCCCTCGG CGAACCGAAAAGCGGCACGACTTGGCTGGGAAGAATGGTTCCGTCGTTGG CTATCGAGCTATGCGGGAGCGAAAACAACCCGTGGTGCCAGCTTGGGGGA GTCGAAGTCTTCCCACATCCTCCTGCGCCGTCTTACGAGTTCGAATTGCT CAACATATCAACCCCGACCGGCAGGCCAAGACTTTTCCTCCACTTTCAGG GGCGCATTAAGCACATCATCCCGGGGATGGATCTCGGAATTCCTCTCAAG TGTCGCAATGGAGGACGACTGCACAAGGAGGGTTTCATGGATCTCCAGCC GTGCGATTCAGGAGAATCACCTACGAGGGAGCGGCTCGAATCTTGCCTCT GGAATACGACTAAACGCTGTGTTAACTACATGACGAGTACGGACCCGGCC GTTCGGCGATCAATCGTCCTCTTTCGTGACCCACGGGACGTTGTGATATC GGAGTACAAGATGCGGACCCAGGTGTTTCATAGGGATCCGTGGATCGCGA GCCTTTCGCTGGAGGAGTTCGTTCAGTTTAAGTTTGAGGTGCTAGTCTCG TGGCTTCACCAGCGATACATGTGGCACACAGGCGATCTGATGGGCCCGTC ATCCCACGTCGAGTTCTACGACGAGCTACAGAAGAGCCCTGTTGGATTCG TCGGAATCGCTCGTCTCATGGGCCTCGAGTGCTCCGAAGACCAGGCGTAC AAGGTGTGGAAAGCTCACAAGCAGGCCTCTCCCAACGGAGGCTTCGCCAC CCGGCTCGGGGAAGCGACTATTCAGTTCATGAACGCGACGATGGCGAGGC TGCTCCCTCCATCCGTAGCGATTCAATGGGGCTTAACGCCGACCGAGCTC TGA back to top
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