EsuBft748_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft748_5a-0001
Unique NameEsuBft748_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:395329..396459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZG5
ProteomeIdEsuBft748_5
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length92
Hectar predicted targeting categoryother localisation
Evalue1.48e-08
EggNOG OGsCOG0319@1|root,2R6QZ@2759|Eukaryota
Ec32 ortholog descriptionEndoribonuclease YbeY
Ec32 orthologEc-19_003220.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameYBEY
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Descriptionmetalloendopeptidase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft748_5aEsuBft748_5aEctocarpus subulatus male Bft15bgeneScaffold_230 395329..396459 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_5a-0001-exonagat-exon-61321Ectocarpus subulatus male Bft15bexonScaffold_230 395329..396199 +
EsuBft748_5a-0001-exonEsuBft748_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 396403..396459 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_5a-0001-exonagat-five_prime_utr-13508Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 395329..395560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_5a-0001-cdsEsuBft748_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 395561..396199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_5a-0001EsuBft748_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 395561..396459 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft748_5a-0001 ID=EsuBft748_5a-0001|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=928bp|location=Sequence derived from alignment at Scaffold_230:395329..396459+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATAAAGCAGTTCAGACACACAGCTTCTTCCCCAGCGCGGCCACC
TGGCATCTGTTGCTGTCGCGCGCATCTTGCCAACCGTGCCGAGAATCACG
AGTGGACGTCGAACAAGAAGTCGAGAGCCGATTTTCCGTCCCTAGACGGT
CCGCTGCACAACCCTACTGCAACCGTCCGATTTCCTCCGTTTCCGCAACA
CCACGATCGACAACACCAGCAAGCTCGTCGCCATGCAGCAGGCCCGATCG
CTCGTCTTCGGGCTTCGACCGCCAACTTGCCGTGCCAGCAGCGTGCTCTC
CTTCACCCAGCCCGCCCGGCCTTGGATGTCCCAGCCGGCGTCTGCCCTGC
ACAGCTGTAGTAGGCATCACAGCGGCGGCTGCGGCACGTCGTCATCAAGG
CAGGCACCAAGGGCAGCAGATCCTGTCTCGCGCAACGGCGCCATGATGAG
CAGCACGGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGAAGCA
AGAGACTGCGGTGGGGAATGGCACTGGAATGTCCGGGTGCTTTCTCGGCA
GTGCCGAGGAGAGGTCGGCCTGCTGCTGCTGCTGCTGTGCCCCGCCGGCT
GCTTGGGCATCATGAAGCACGTATGTTCCTGATGGCTCCCTCCCGGAGAT
CCATGTCCACTGAAGCGGGCGGCGGCGGCGGGGTGGTAGAGGAAAGCGCT
CACGGCGAGAGCGAGGTCGAAGACGACGAGGGCGGAGACGGGCTTCTTGC
CGCGCTGGCGGACGAGCTAGTCTGGGAAGGGGATGACGACGAAGGGGAGG
GAGATGATGGGGAGGAGGACGAAGCTGGGATGGAGGGATTGGATCTCGAG
AGCTTGGGGATATCCATCATGGGTTCGTTTACGCAAGAGCCGAGATCGGT
GCCTCAGATCTTCCCCGCGATGCGATAG
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protein sequence of EsuBft748_5a-0001

>EsuBft748_5 ID=EsuBft748_5|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MQQARSLVFGLRPPTCRASSVLSFTQPARPWMSQPASALHSCSRHHSGGC
GTSSSRQAPRAADPVSRNGAMMSSTDSSSSSSSSSRSRSKRLRWGMALEC
PGAFSAVPRRGRPAAAAAVPRRLLGHHEARMFLMAPSRRSMSTEAGGGGG
VVEESAHGESEVEDDEGGDGLLAALADELVWEGDDDEGEGDDGEEDEAGM
EGLDLESLGISIMGSFTQEPRSVPQIFPAMR
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mRNA from alignment at Scaffold_230:395329..396459+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft748_5a-0001 ID=EsuBft748_5a-0001|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_230:395329..396459+ (Ectocarpus subulatus male Bft15b)
ATGAACATAAAGCAGTTCAGACACACAGCTTCTTCCCCAGCGCGGCCACC
TGGCATCTGTTGCTGTCGCGCGCATCTTGCCAACCGTGCCGAGAATCACG
AGTGGACGTCGAACAAGAAGTCGAGAGCCGATTTTCCGTCCCTAGACGGT
CCGCTGCACAACCCTACTGCAACCGTCCGATTTCCTCCGTTTCCGCAACA
CCACGATCGACAACACCAGCAAGCTCGTCGCCATGCAGCAGGCCCGATCG
CTCGTCTTCGGGCTTCGACCGCCAACTTGCCGTGCCAGCAGCGTGCTCTC
CTTCACCCAGCCCGCCCGGCCTTGGATGTCCCAGCCGGCGTCTGCCCTGC
ACAGCTGTAGTAGGCATCACAGCGGCGGCTGCGGCACGTCGTCATCAAGG
CAGGCACCAAGGGCAGCAGATCCTGTCTCGCGCAACGGCGCCATGATGAG
CAGCACGGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGAAGCA
AGAGACTGCGGTGGGGAATGGCACTGGAATGTCCGGGTGCTTTCTCGGCA
GTGCCGAGGAGAGGTCGGCCTGCTGCTGCTGCTGCTGTGCCCCGCCGGCT
GCTTGGGCATCATGAAGCACGTATGTTCCTGATGGCTCCCTCCCGGAGAT
CCATGTCCACTGAAGCGGGCGGCGGCGGCGGGGTGGTAGAGGAAAGCGCT
CACGGCGAGAGCGAGGTCGAAGACGACGAGGGCGGAGACGGGCTTCTTGC
CGCGCTGGCGGACGAGCTAGTCTGGGAAGGGGATGACGACGAAGGGGAGG
GAGATGATGGGGAGGAGGACGAAGCTGGGATGGAGGGATTGGATCTCGAG
AGCTTGGGGATATCCATCATGGTCAGTTCGCGCGATGTTCGAGGTGTTAG
GAATTCACATCCAATCAAAGAAAGACTGCCCGCTCTAGATATAACCACAG
CAGTAGTCGAAGGGAGTGGTTTGAAGTTCTTTTCGGTGAATGTTGGTGTT
GTTTTGGAGCGTGGACTCCGGCTGTGTTGGTACTTGTATGCATGCGTGTG
GCACACCGAGGGCAAAAGACACAGGGTTCGTTTACGCAAGAGCCGAGATC
GGTGCCTCAGATCTTCCCCGCGATGCGATAG
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Coding sequence (CDS) from alignment at Scaffold_230:395329..396459+

>EsuBft748_5a-0001 ID=EsuBft748_5a-0001|Name=EsuBft748_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_230:395329..396459+ (Ectocarpus subulatus male Bft15b)
ATGCAGCAGGCCCGATCGCTCGTCTTCGGGCTTCGACCGCCAACTTGCCG
TGCCAGCAGCGTGCTCTCCTTCACCCAGCCCGCCCGGCCTTGGATGTCCC
AGCCGGCGTCTGCCCTGCACAGCTGTAGTAGGCATCACAGCGGCGGCTGC
GGCACGTCGTCATCAAGGCAGGCACCAAGGGCAGCAGATCCTGTCTCGCG
CAACGGCGCCATGATGAGCAGCACGGATAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGAAGCAGAAGCAAGAGACTGCGGTGGGGAATGGCACTGGAATGT
CCGGGTGCTTTCTCGGCAGTGCCGAGGAGAGGTCGGCCTGCTGCTGCTGC
TGCTGTGCCCCGCCGGCTGCTTGGGCATCATGAAGCACGTATGTTCCTGA
TGGCTCCCTCCCGGAGATCCATGTCCACTGAAGCGGGCGGCGGCGGCGGG
GTGGTAGAGGAAAGCGCTCACGGCGAGAGCGAGGTCGAAGACGACGAGGG
CGGAGACGGGCTTCTTGCCGCGCTGGCGGACGAGCTAGTCTGGGAAGGGG
ATGACGACGAAGGGGAGGGAGATGATGGGGAGGAGGACGAAGCTGGGATG
GAGGGATTGGATCTCGAGAGCTTGGGGATATCCATCATGGGTTCGTTTAC
GCAAGAGCCGAGATCGGTGCCTCAGATCTTCCCCGCGATGCGATAG
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