EsuBft730_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft730_3a-0001
Unique Name	EsuBft730_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_472	contig	Scaffold_472:241698..243973 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft730_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	165
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft730_3a	EsuBft730_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_472 241698..243973 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft730_3a-0001	EsuBft730_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_472 242310..243953 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft730_3a-0001-exon	agat-exon-44334	Ectocarpus subulatus male Bft15b	exon	Scaffold_472 241698..242349 -
EsuBft730_3a-0001-exon	EsuBft730_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_472 242565..242847 -
EsuBft730_3a-0001-exon	agat-exon-44335	Ectocarpus subulatus male Bft15b	exon	Scaffold_472 243254..243973 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft730_3a-0001-exon	agat-three_prime_utr-20811	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_472 241698..242309 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft730_3a-0001-cds	EsuBft730_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_472 242310..242349 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft730_3a-0001-exon	agat-five_prime_utr-13354	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_472 243954..243973 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_472:241698..243973-
coding sequence from alignment at Scaffold_472:241698..243973-

spliced messenger RNA

>EsuBft730_3a-0001 ID=EsuBft730_3a-0001|Name=EsuBft730_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1655bp|location=Sequence derived from alignment at Scaffold_472:241698..243973- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGACTCAGAGACCGCAATATGGTAGTAGCCACCGTCAACCTCGGTGGC
AGGCTTGCCCACAATCATGCAGTCCGGACTAAACCGAAACAGAAGCAATT
CAACCGACGGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTGACTAATC
GGTTCCTCCTCAACCTCGACACACGACTGGACGAGCGAACAACCACCGCC
GCGGAATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAGCACGGAC
GACCCTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGGTGTGAGA
CCCCAGAGACGCGAGCAGCGCTGAAGCAGGCCCTTGCCAAACGTCGGGAA
GCGCGCCGGGCGAAGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTCCT
CAAAGCAGCGTGTAAGGGAGTGGCTACAGTAGTCGAAACGGGCATTTATG
CCCACCTGGACGGATATGTGACTGAGCTCGAAGAAATCTACAAAGATCGC
GACATGCGAGGACTGTACCAACACCTCAAGAGACCAGTGGGCCTCAGCGG
GAGACAAGCGGGGGAACGGCAGTTCGTCGCGGATGAGAACGGCGTGTTCC
TCCGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCAAC
TTACTCAACGCCAAATCCCTCACCCTGAACCCAGACATCATCGAACGAGT
GACGCAGCGGCCAGCGACACGTCGCAAAGATGGGGGTGACTCCTCCAGCG
ACTCTGCGGCGGAAGACAGAAAGGGGTCAAGAGAAGAGCTCGTGGCCCTG
AGGACGCAAGCTAGCTCGCTGACGGATCAGATGAGCTATCGAATGTCGCT
AGTGGAAGATACCATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCA
CGGAGGGTGCCCCTGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAG
TCCACGAACGCCGAAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGG
GAGCGGAAATCGAAAGATTTCAACGNTGTCCCCCAAGAGGTGAGAGTAGC
CGCTGCTCACAACCAAGATTACAGTAGTGCCATGGGATATGTGGTGCTGC
TGTTGGCGTTGGACACGGAGCCACAACCCCAGCGACGGGGTACCAAAGTT
TGCGGTACACTTCTCCTCCGTTCAGCGGAAATCGAAAGATTTCAACGAAT
GGCTTAATGATTTCCGCATGGCAGCTAATGGCGCAAACCTGTTGGAACAG
TTTGAAGAGAGCGGGAGCTTGGAGATCCCCGTCAACAGCGGAAAGAGCAA
GTTTTCGCTGTCACAGCAGTGCCGGAGCGAGCAAGCTCGCATTCCATGCG
TGGAACTTCCTGTCTCACGCGTTGAAAGAAAAAGATCGGAAATCTTGAAG
AGGGCGGAGATGCCCCAGGGAGCTCTTCGTGAGCTCAAGACCATACACGA
CCCTGAATCATCTGTACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGA
CCAAGATCTCTAGAGGTGAAAACCCCCAAAACGCCCTAAATGAGATGCTC
CAAACCGCAAAGTCCTTAACCGAGAAAGGACAAACTGTCAACGAAACGTT
CATCCTTCACCTCTTCCTGGATAACCTTTCGGACGAGTATGCCATGACAA
CGCAC

protein sequence of EsuBft730_3a-0001

>EsuBft730_3 ID=EsuBft730_3|Name=EsuBft730_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=340bp
MVVATVNLGGRLAHNHAVRTKPKQKQFNRRELQFEAARCAVTNRFLLNLD
TRLDERTTTAAELATDFTNALLDAARTTLGEEPRRRRTQEWCETPETRAA
LKQALAKRREARRAKRGNWNSATWRVLKAACKGVATVVETGIYAHLDGYV
TELEEIYKDRDMRGLYQHLKRPVGLSGRQAGERQFVADENGVFLRNRDDI
LQRWARFFSNLLNAKSLTLNPDIIERVTQRPATRRKDGGDSSSDSAAEDR
KGSREELVALRTQASSLTDQMSYRMSLVEDTMKASKKEEPAGTTEGAPDR
GDARESAAAESTNAEGGAPWTGSAQDGSGNRKISTXSPKR

mRNA from alignment at Scaffold_472:241698..243973-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft730_3a-0001 ID=EsuBft730_3a-0001|Name=EsuBft730_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2276bp|location=Sequence derived from alignment at Scaffold_472:241698..243973- (Ectocarpus subulatus male Bft15b)
GCAGACTCAGAGACCGCAATATGGTAGTAGCCACCGTCAACCTCGGTGGC
AGGCTTGCCCACAATCATGCAGTCCGGACTAAACCGAAACAGAAGCAATT
CAACCGACGGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTGACTAATC
GGTTCCTCCTCAACCTCGACACACGACTGGACGAGCGAACAACCACCGCC
GCGGAATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAGCACGGAC
GACCCTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGGTGTGAGA
CCCCAGAGACGCGAGCAGCGCTGAAGCAGGCCCTTGCCAAACGTCGGGAA
GCGCGCCGGGCGAAGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTCCT
CAAAGCAGCGTGTAAGGGAGTGGCTACAGTAGTCGAAACGGGCATTTATG
CCCACCTGGACGGATATGTGACTGAGCTCGAAGAAATCTACAAAGATCGC
GACATGCGAGGACTGTACCAACACCTCAAGAGACCAGTGGGCCTCAGCGG
GAGACAAGCGGGGGAACGGCAGTTCGTCGCGGATGAGAACGGCGTGTTCC
TCCGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCAAC
TTACTCAACGCCAAATCCCTCACCCTGAACCCAGACATCATCGAACGAGT
GACGCAGCGGCCAGCGACACGTGACACTTAACGGCTGGGAGATGTGCCAG
AACTCGAGGAGGTGGCACAGGCAACGAAAGGCCTCAAGAACTGGAAGGCA
CCCGGCCATGACTCCCTACCTGCCGAGTTGCTCAAGATCGATGACGACGA
ACCCTTCGTCCTGGGACACCTCCATACTGTTCGTGTGTTTGGATACGGAC
TGGTTAGATCTACCGGCAGCAACAGAGGGCACGCAGATGGGGCATATGTA
CACCTTGAAATGGTTGTATGTGCGGGGACCCCTCGAACTCCAAAGAGGGC
TTCACTTCTCCCTACTCCCCTTGCGTGTCTAATACAAGAGATAATACATC
TTCCCCTTCCAAGTGAAGGACATATACGAACACACTAGCGTCAGTCCCTC
GAGGGAGAGTTCATTAGGAATGTCAGGTCGCAAAGATGGGGGTGACTCCT
CCAGCGACTCTGCGGCGGAAGACAGAAAGGGGTCAAGAGAAGAGCTCGTG
GCCCTGAGGACGCAAGCTAGCTCGCTGACGGATCAGATGAGCTATCGAAT
GTCGCTAGTGGAAGATACCATGAAGGCAAGCAAGAAGGAGGAGCCAGCTG
GCACCACGGAGGGTGCCCCTGATCGCGGCGATGCTAGGGAGAGCGCCGCC
GCGGAGTCCACGAACGCCGAAGGAGGGGCACCGTGGACCGGGAGTGCGCA
GGACGGGAGGTACCTGGGCGAACCTGTTCGAGAGTCTGGCCCATCAGGGC
GACACAGCGGCGAAGCACGGGGCTTTGTCCCCCAAGAGGTGAGAGTAGCC
GCTGCTCACAACCAAGATTACAGTAGTGCCATGGGATATGTGGTGCTGCT
GTTGGCGTTGGACACGGAGCCACAACCCCAGCGACGGGGTACCAAAGTTT
GCGGTACACTTCTCCTCCGTTCAGCGGAAATCGAAAGATTTCAACGNTGT
CCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATTACAGTAGTG
CCATGGGATATGTGGTGCTGCTGTTGGCGTTGGACACGGAGCCACAACCC
CAGCGACGGGGTACCAAAGTTTGCGGTACACTTCTCCTCCGTTCAGCGGA
AATCGAAAGATTTCAACGAATGGCTTAATGATTTCCGCATGGCAGCTAAT
GGCGCAAACCTGTTGGAACAGTTTGAAGAGAGCGGGAGCTTGGAGATCCC
CGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCACAGCAGTGCCGGAGCG
AGCAAGCTCGCATTCCATGCGTGGAACTTCCTGTCTCACGCGTTGAAAGA
AAAAGATCGGAAATCTTGAAGAGGGCGGAGATGCCCCAGGGAGCTCTTCG
TGAGCTCAAGACCATACACGACCCTGAATCATCTGTACAGCCGTCAGAGG
ACCTCAAGTCCCTGACGTCGACCAAGATCTCTAGAGGTGAAAACCCCCAA
AACGCCCTAAATGAGATGCTCCAAACCGCAAAGTCCTTAACCGAGAAAGG
ACAAACTGTCAACGAAACGTTCATCCTTCACCTCTTCCTGGATAACCTTT
CGGACGAGTATGCCATGACAACGCAC

Coding sequence (CDS) from alignment at Scaffold_472:241698..243973-

>EsuBft730_3a-0001 ID=EsuBft730_3a-0001|Name=EsuBft730_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1023bp|location=Sequence derived from alignment at Scaffold_472:241698..243973- (Ectocarpus subulatus male Bft15b)
ATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGCTTGCCCACAATCATGC
AGTCCGGACTAAACCGAAACAGAAGCAATTCAACCGACGGGAATTGCAGT
TCGAAGCAGCACGGTGTGCGGTGACTAATCGGTTCCTCCTCAACCTCGAC
ACACGACTGGACGAGCGAACAACCACCGCCGCGGAATTGGCGACCGACTT
TACCAATGCTCTCCTCGACGCAGCACGGACGACCCTGGGGGAGGAACCGC
GGAGACGCCGCACGCAGGAGTGGTGTGAGACCCCAGAGACGCGAGCAGCG
CTGAAGCAGGCCCTTGCCAAACGTCGGGAAGCGCGCCGGGCGAAGAGGGG
CAACTGGAACTCAGCGACGTGGAGGGTCCTCAAAGCAGCGTGTAAGGGAG
TGGCTACAGTAGTCGAAACGGGCATTTATGCCCACCTGGACGGATATGTG
ACTGAGCTCGAAGAAATCTACAAAGATCGCGACATGCGAGGACTGTACCA
ACACCTCAAGAGACCAGTGGGCCTCAGCGGGAGACAAGCGGGGGAACGGC
AGTTCGTCGCGGATGAGAACGGCGTGTTCCTCCGGAACAGGGACGACATC
CTCCAGCGGTGGGCGAGATTCTTCAGCAACTTACTCAACGCCAAATCCCT
CACCCTGAACCCAGACATCATCGAACGAGTGACGCAGCGGCCAGCGACAC
GTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGAAGACAGA
AAGGGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGCTAGCTCGCT
GACGGATCAGATGAGCTATCGAATGTCGCTAGTGGAAGATACCATGAAGG
CAAGCAAGAAGGAGGAGCCAGCTGGCACCACGGAGGGTGCCCCTGATCGC
GGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGG
GGCACCGTGGACCGGGAGTGCGCAGGACGGGAGCGGAAATCGAAAGATTT
CAACGNTGTCCCCCAAGAGGTGA