EsuBft730_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft730_2a-0001
Unique NameEsuBft730_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:245614..246597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft730_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length60
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft730_2aEsuBft730_2aEctocarpus subulatus male Bft15bgeneScaffold_472 245614..246597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_2a-0001EsuBft730_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 245614..245884 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_2a-0001-exonagat-exon-44332Ectocarpus subulatus male Bft15bexonScaffold_472 245614..245650 +
EsuBft730_2a-0001-exonagat-exon-44333Ectocarpus subulatus male Bft15bexonScaffold_472 245736..246286 +
EsuBft730_2a-0001-exonEsuBft730_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 246583..246597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_2a-0001-cdsEsuBft730_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 245614..245650 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft730_2a-0001-exonagat-three_prime_utr-20809Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 245885..246286 +
EsuBft730_2a-0001-exonagat-three_prime_utr-20810Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 246583..246597 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft730_2a-0001 ID=EsuBft730_2a-0001|Name=EsuBft730_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=603bp|location=Sequence derived from alignment at Scaffold_472:245614..246597+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGGTTTGCGGCCTACGCCACTTATTTATCGGCCAGAGCGGCTCC
AACAGCACGGCGCCCGGAAATCTGCCCTTGCGGGCAGGAGCCGACCCGCC
TGCCCTCAAAAAGCCTCCGGAACGTCTCTTTACAGACCCGCAAATTTGAA
AGTCCCCAGCCCGCGCAGCCGCCCTCCCCAATCTAGACTTAAGTGGGTTG
GCGCTGTTGGCAAAGCGCTGTAAAACACGCCACCCCAAATATAACCCCCA
TAGTTTGCGCTACCAAAGACGCGTGACGCATGGATGCGTGGAGTGAGGAT
TGCTTACGGAAACCTCACAGGTTGAGTGATGTAGGAGATTGCCGGACACA
TAGACGTGTTGAGTGATAATAGCTGTATACTGAAACCCCAAGAGTTGAGT
GAGGTTTGAGATTGCCAGACACATGGACGAGTTGAGTGGGGATAGCTGCA
TACTGAAACCCCACGGGTTGAGTGATGTTGGAGTGCCGGACACATAGACG
CGTTGAATGAGGATAGACACATATTGAACCTCACAGGTGATTTGTATTGG
AGATTGCGGGACACCTAGACGTGTTGAGTGAGGATACCCTGCATACTGAA
ACC
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protein sequence of EsuBft730_2a-0001

>EsuBft730_2 ID=EsuBft730_2|Name=EsuBft730_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MERFAAYATYLSARAAPTARRPEICPCGQEPTRLPSKSLRNVSLQTRKFE
SPQPAQPPSPI
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mRNA from alignment at Scaffold_472:245614..246597+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft730_2a-0001 ID=EsuBft730_2a-0001|Name=EsuBft730_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=984bp|location=Sequence derived from alignment at Scaffold_472:245614..246597+ (Ectocarpus subulatus male Bft15b)
ATGGAACGGTTTGCGGCCTACGCCACTTATTTATCGGGTGAGACTGTATT
GGTGATGTATTAACTTCACGAGAGCTAGGCGACCGTCCTTCACACGGACG
AAAGAGGGAGTGCTCCAAACAGCCAGAGCGGCTCCAACAGCACGGCGCCC
GGAAATCTGCCCTTGCGGGCAGGAGCCGACCCGCCTGCCCTCAAAAAGCC
TCCGGAACGTCTCTTTACAGACCCGCAAATTTGAAAGTCCCCAGCCCGCG
CAGCCGCCCTCCCCAATCTAGACTTAAGTGGGTTGGCGCTGTTGGCAAAG
CGCTGTAAAACACGCCACCCCAAATATAACCCCCATAGTTTGCGCTACCA
AAGACGCGTGACGCATGGATGCGTGGAGTGAGGATTGCTTACGGAAACCT
CACAGGTTGAGTGATGTAGGAGATTGCCGGACACATAGACGTGTTGAGTG
ATAATAGCTGTATACTGAAACCCCAAGAGTTGAGTGAGGTTTGAGATTGC
CAGACACATGGACGAGTTGAGTGGGGATAGCTGCATACTGAAACCCCACG
GGTTGAGTGATGTTGGAGTGCCGGACACATAGACGCGTTGAATGAGGATA
GACACATATTGAACCTCACAGGTGATTTGTATTGGAGATTGCGGGACACC
TAGACGTGTTGAGTGAGGATACCGTATTCTACACAAGATACCACACCCTC
ATAAGATACCACACCCCCCCCACAATACCACACCCCGGTGGTAATTTTGG
GTGTATTTTTCAGACCATGATTTATCACCGGGGGTACACAAGATACCACA
CCCCGGTGATAACACAGGTTACGCCGCATACATTCCCTGTCTCTATCACC
GGGGGTGAAACAGCATCACACACGCNGACGTGTTGAGTGATAATAGCTGT
ATACTGAAACCCCAAGAGTTGAGTGAGGTTTGAGATTGCCAGACACATGG
ACGAGTTGAGTGGGGATAGCTGCATACTGAAACC
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Coding sequence (CDS) from alignment at Scaffold_472:245614..246597+

>EsuBft730_2a-0001 ID=EsuBft730_2a-0001|Name=EsuBft730_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_472:245614..246597+ (Ectocarpus subulatus male Bft15b)
ATGGAACGGTTTGCGGCCTACGCCACTTATTTATCGGCCAGAGCGGCTCC
AACAGCACGGCGCCCGGAAATCTGCCCTTGCGGGCAGGAGCCGACCCGCC
TGCCCTCAAAAAGCCTCCGGAACGTCTCTTTACAGACCCGCAAATTTGAA
AGTCCCCAGCCCGCGCAGCCGCCCTCCCCAATCTAG
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