Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4792.ETI53387 |
| ProteomeId | EsuBft685_2 |
| Protein domains | IPR002492 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 4776|Peronosporales |
| Length | 56 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.24e-11 |
| EggNOG OGs | 2CMKC@1|root,2QQNW@2759|Eukaryota,3QGXT@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003677 |
| GO | 0006313 |
| GO | 0015074 |
| GO | 0004803 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft685_2a-0001 ID=EsuBft685_2a-0001|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_233:509918..510481+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTGCCGAGCTGCTCAAGGGCAGCAACAACGGGGCTTTGAGCCATGG
TGACGTGAAGAGGGTGGTGGCGATCTACAAACAGACACCCAAGACGGTGA
GCAAGTACTGGAAGCTGTACAACCAGAAGAAAGAAGCCGGGGAAGAAGAT
CCCGACCTTCACAACAAACGTAAGGGCAACAGCGGCCAGAAGGGGCTGGA
CATCGCCACTCTGAAGGAGGCGTTGCAAGACATCCACCTGAAGAACCGCA
CCACGATAAGATCGATTGCAGCCGCTTTGGGCATTCCTAAGTCAACTCTG
TTCGACAACCTCAATAATCTAGGCCTGCGATCGTGCTCAAGGTTCCTCAA
GCCGCTTCTTTCCGATGATTGGAAGGCGCAGCGGTTGGCATGGGCGTTGA
GATGGGTTCGGTCCAGCGCCGGCGATGCACACCTGGTCGGCGGGAACCCG
GCACGGAACCCTCCGGCGTTGTACGCGGGTGTGGGAAGCGTTCCCCGTCC
TGCTTTTATTTTATTTTGGTCGGTCTCCTCGACGCTCTTTCTCGTTTGGT
GCGGTAGCTGGTAG back to topprotein sequence of EsuBft685_2a-0001 >EsuBft685_2 ID=EsuBft685_2|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEED
PDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTL
FDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDAHLVGGNP
ARNPPALYAGVGSVPRPAFILFWSVSSTLFLVWCGSW back to topmRNA from alignment at Scaffold_233:509918..510481+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft685_2a-0001 ID=EsuBft685_2a-0001|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_233:509918..510481+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCCGAGCTGCTCAAGGGCAGCAACAACGGGGCTTTGAGCCATGG
TGACGTGAAGAGGGTGGTGGCGATCTACAAACAGACACCCAAGACGGTGA
GCAAGTACTGGAAGCTGTACAACCAGAAGAAAGAAGCCGGGGAAGAAGAT
CCCGACCTTCACAACAAACGTAAGGGCAACAGCGGCCAGAAGGGGCTGGA
CATCGCCACTCTGAAGGAGGCGTTGCAAGACATCCACCTGAAGAACCGCA
CCACGATAAGATCGATTGCAGCCGCTTTGGGCATTCCTAAGTCAACTCTG
TTCGACAACCTCAATAATCTAGGCCTGCGATCGTGCTCAAGGTTCCTCAA
GCCGCTTCTTTCCGATGATTGGAAGGCGCAGCGGTTGGCATGGGCGTTGA
GATGGGTTCGGTCCAGCGCCGGCGATGCACACCTGGTCGGCGGGAACCCG
GCACGGAACCCTCCGGCGTTGTACGCGGGTGTGGGAAGCGTTCCCCGTCC
TGCTTTTATTTTATTTTGGTCGGTCTCCTCGACGCTCTTTCTCGTTTGGT
GCGGTAGCTGGTAG back to topCoding sequence (CDS) from alignment at Scaffold_233:509918..510481+ >EsuBft685_2a-0001 ID=EsuBft685_2a-0001|Name=EsuBft685_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_233:509918..510481+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCCGAGCTGCTCAAGGGCAGCAACAACGGGGCTTTGAGCCATGG
TGACGTGAAGAGGGTGGTGGCGATCTACAAACAGACACCCAAGACGGTGA
GCAAGTACTGGAAGCTGTACAACCAGAAGAAAGAAGCCGGGGAAGAAGAT
CCCGACCTTCACAACAAACGTAAGGGCAACAGCGGCCAGAAGGGGCTGGA
CATCGCCACTCTGAAGGAGGCGTTGCAAGACATCCACCTGAAGAACCGCA
CCACGATAAGATCGATTGCAGCCGCTTTGGGCATTCCTAAGTCAACTCTG
TTCGACAACCTCAATAATCTAGGCCTGCGATCGTGCTCAAGGTTCCTCAA
GCCGCTTCTTTCCGATGATTGGAAGGCGCAGCGGTTGGCATGGGCGTTGA
GATGGGTTCGGTCCAGCGCCGGCGATGCACACCTGGTCGGCGGGAACCCG
GCACGGAACCCTCCGGCGTTGTACGCGGGTGTGGGAAGCGTTCCCCGTCC
TGCTTTTATTTTATTTTGGTCGGTCTCCTCGACGCTCTTTCTCGTTTGGT
GCGGTAGCTGGTAG back to top
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