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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LCF4 |
| ProteomeId | EsuBft663_15 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 140 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 2.33e-177 |
| EggNOG OGs | 28I6J@1|root,2QQGQ@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-26_004810.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | PHTF1 |
| GOs | GO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005801,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141 |
| Description | transcription, DNA-templated |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft663_15a-0001 ID=EsuBft663_15a-0001|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1404bp|location=Sequence derived from alignment at Scaffold_189:221702..223391- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATGGCCACCGTCCTGTTTCCAACGGCCGCGTTGTCCATCCCTTTTCT
GCCTGCACCTCCTGCGCGTATCTCTGGCCGGGCCGTGGCCGGTCTTTCCG
TTGCGGGACAAAAACAACCACAACGGCAACAAATATCGCAGATCCCTCGG
CTGCAGTTTTTCCTGGGATGCACCCTCTACGTGCTGCACAACGCGTGCGC
GTGGCTCTACGTCCGGGGCTGCCTACCGCCGGCGCAGTGGACGCTGCAGC
AGCAGCAGCAGCCATCCTGGGGAGGGCTCGGCGCAGAAGGAGGCAACCAC
GTCATGCACGTTGAGATCCTGCTGCCGTACGTGATCGGATTCCTGTTCGG
CATCGGCTACGGCTCCGTCGTGGCCGCCGGGGGCTGGGAAGCACTGCGCG
AGCCCGCCGACCCGGGCGGCGCCGCCGGGGCCACCGGCGGTGGCGGTGGC
GGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGCGGTGAAGCCCCCGG
CAGCGGTAGCGGCGGCGGCGGAGAGGCGACGAACATTTCGTTCGCGGCGC
AGGTTTGCGCCTGGGACAGCCGCGCGGAGGAAGAGGCGCAGGCCGCCGGC
GACGGCGAGGAGGACGATGACGACGACTTCGATTCGTCGTCGGGACCCGG
CAGCGACAACGACGACTCGGGCGACGCGGGGGATAACCACCCCGGCGGTG
GTGGTGAAAGAAGAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCTTCG
CCTTCGAAGGAGGGGGCGGGTACCACGGCGCGCGGCGGGCGGGTGACACG
CTCTCGGGCTCACAACATCGGATTCAAAGAAGTCGCCGACAGTGGCGGCG
GTGAGAACACCGCAGGAGGAGGCGGTGCTAGCGGCAGCGCCCCCGCCGCG
CTTGACCCCGTCGGAGACCCCGCTCGAACGTCGAGACCGGTGACGTGCGA
CAAGCCCGGGCGTTCCACCGAAGGCTCCGGCGGCACCGCCACGACCTCGT
CTTCCGGAGGGGGGGAGGGTGGCGGTAGCGGCAGCGGCGGCGGCGGGAGC
GGGGTCGGTGGGAGCGGGGAGCCTCTCCGGCGGCTGAGTCTGGTCCACCA
GCCGACGCGATTCGACGGCACGGAGGCGGAGGACGACGAGGACGACGAGG
AGGACGGCTACGGCTGGGGGCAGCAGGTGGTGGTGAAGCCGGTGAAGGTG
TCGCTGTGGGACAAGCGTGGGCTGAGGTCGAAGGCGCTGCTGTCCCTCAA
CCAGCTCCGCGCGTGCATCATCGAGCGCGCCGAGAGCACTCCGCAGAAGG
CCACCTACCACCGCGCGGCGAAGCTGGTGAGAGACTTCGAGAAGGAAGAG
AAGCTGTTTGTATTTTCTGAAGCAGTAGCGACGGCAACTTTGTCCTGTCG
ATGA back to topprotein sequence of EsuBft663_15a-0001 >EsuBft663_15 ID=EsuBft663_15|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=467bp
MMATVLFPTAALSIPFLPAPPARISGRAVAGLSVAGQKQPQRQQISQIPR
LQFFLGCTLYVLHNACAWLYVRGCLPPAQWTLQQQQQPSWGGLGAEGGNH
VMHVEILLPYVIGFLFGIGYGSVVAAGGWEALREPADPGGAAGATGGGGG
GGSGSGSGSGSGGEAPGSGSGGGGEATNISFAAQVCAWDSRAEEEAQAAG
DGEEDDDDDFDSSSGPGSDNDDSGDAGDNHPGGGGERRAAAAAAAAAAAS
PSKEGAGTTARGGRVTRSRAHNIGFKEVADSGGGENTAGGGGASGSAPAA
LDPVGDPARTSRPVTCDKPGRSTEGSGGTATTSSSGGGEGGGSGSGGGGS
GVGGSGEPLRRLSLVHQPTRFDGTEAEDDEDDEEDGYGWGQQVVVKPVKV
SLWDKRGLRSKALLSLNQLRACIIERAESTPQKATYHRAAKLVRDFEKEE
KLFVFSEAVATATLSCR back to topmRNA from alignment at Scaffold_189:221702..223391- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft663_15a-0001 ID=EsuBft663_15a-0001|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1690bp|location=Sequence derived from alignment at Scaffold_189:221702..223391- (Ectocarpus subulatus male Bft15b)
ATGATGGCCACCGTCCTGTTTCCAACGGCCGCGTTGTCCATCCCTTTTCT
GCCTGCACCTCCTGCGCGTATCTCTGGCCGGGCCGTGGCCGGTCTTTCCG
TTGCGGGACAAAAACAACCACAACGGCAACAAATATCGCAGATCCCTCGG
CTGCAGTTTTTCCTGGGATGCACCCTCTACGTGCTGCACAACGCGTGCGC
GTGGCTCTACGTCCGGGGCTGCCTACCGCCGGCGCAGTGGACGCTGCAGC
AGCAGCAGCAGCCATCCTGGGGAGGGCTCGGCGCAGAAGGAGGCAACCAC
GTCATGCACGTTGAGGTAAGCTGGTGCCCGTGCTGCTGTAGTTGTGTTGG
TGTTTTGTTCCTTTTTGTATATATATATCCACAGCAGTCGAGGTGCTTTG
TTTGTTTTGACGGCGATATGCGGAAGGTGCTGTTGCTTTCTCACGTTTTT
ACAAGGAGGGAGCGGACCACACCCTCATCCTTATACAGCAGTAACCCTCG
CCCAAGTCGTATGGTGCGTTGATGGCCTTACGTTGCGCGGTACAAACAAA
ACCTTTGGCTGTGTTTTTTATTTCCATTATTGTCTCGCCTTTTTTTGGCA
GATCCTGCTGCCGTACGTGATCGGATTCCTGTTCGGCATCGGCTACGGCT
CCGTCGTGGCCGCCGGGGGCTGGGAAGCACTGCGCGAGCCCGCCGACCCG
GGCGGCGCCGCCGGGGCCACCGGCGGTGGCGGTGGCGGTGGCAGTGGCAG
TGGCAGTGGCAGTGGCAGTGGCGGTGAAGCCCCCGGCAGCGGTAGCGGCG
GCGGCGGAGAGGCGACGAACATTTCGTTCGCGGCGCAGGTTTGCGCCTGG
GACAGCCGCGCGGAGGAAGAGGCGCAGGCCGCCGGCGACGGCGAGGAGGA
CGATGACGACGACTTCGATTCGTCGTCGGGACCCGGCAGCGACAACGACG
ACTCGGGCGACGCGGGGGATAACCACCCCGGCGGTGGTGGTGAAAGAAGA
GCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCTTCGCCTTCGAAGGAGGG
GGCGGGTACCACGGCGCGCGGCGGGCGGGTGACACGCTCTCGGGCTCACA
ACATCGGATTCAAAGAAGTCGCCGACAGTGGCGGCGGTGAGAACACCGCA
GGAGGAGGCGGTGCTAGCGGCAGCGCCCCCGCCGCGCTTGACCCCGTCGG
AGACCCCGCTCGAACGTCGAGACCGGTGACGTGCGACAAGCCCGGGCGTT
CCACCGAAGGCTCCGGCGGCACCGCCACGACCTCGTCTTCCGGAGGGGGG
GAGGGTGGCGGTAGCGGCAGCGGCGGCGGCGGGAGCGGGGTCGGTGGGAG
CGGGGAGCCTCTCCGGCGGCTGAGTCTGGTCCACCAGCCGACGCGATTCG
ACGGCACGGAGGCGGAGGACGACGAGGACGACGAGGAGGACGGCTACGGC
TGGGGGCAGCAGGTGGTGGTGAAGCCGGTGAAGGTGTCGCTGTGGGACAA
GCGTGGGCTGAGGTCGAAGGCGCTGCTGTCCCTCAACCAGCTCCGCGCGT
GCATCATCGAGCGCGCCGAGAGCACTCCGCAGAAGGCCACCTACCACCGC
GCGGCGAAGCTGGTGAGAGACTTCGAGAAGGAAGAGAAGCTGTTTGTATT
TTCTGAAGCAGTAGCGACGGCAACTTTGTCCTGTCGATGA back to topCoding sequence (CDS) from alignment at Scaffold_189:221702..223391- >EsuBft663_15a-0001 ID=EsuBft663_15a-0001|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1404bp|location=Sequence derived from alignment at Scaffold_189:221702..223391- (Ectocarpus subulatus male Bft15b)
ATGATGGCCACCGTCCTGTTTCCAACGGCCGCGTTGTCCATCCCTTTTCT
GCCTGCACCTCCTGCGCGTATCTCTGGCCGGGCCGTGGCCGGTCTTTCCG
TTGCGGGACAAAAACAACCACAACGGCAACAAATATCGCAGATCCCTCGG
CTGCAGTTTTTCCTGGGATGCACCCTCTACGTGCTGCACAACGCGTGCGC
GTGGCTCTACGTCCGGGGCTGCCTACCGCCGGCGCAGTGGACGCTGCAGC
AGCAGCAGCAGCCATCCTGGGGAGGGCTCGGCGCAGAAGGAGGCAACCAC
GTCATGCACGTTGAGATCCTGCTGCCGTACGTGATCGGATTCCTGTTCGG
CATCGGCTACGGCTCCGTCGTGGCCGCCGGGGGCTGGGAAGCACTGCGCG
AGCCCGCCGACCCGGGCGGCGCCGCCGGGGCCACCGGCGGTGGCGGTGGC
GGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGCGGTGAAGCCCCCGG
CAGCGGTAGCGGCGGCGGCGGAGAGGCGACGAACATTTCGTTCGCGGCGC
AGGTTTGCGCCTGGGACAGCCGCGCGGAGGAAGAGGCGCAGGCCGCCGGC
GACGGCGAGGAGGACGATGACGACGACTTCGATTCGTCGTCGGGACCCGG
CAGCGACAACGACGACTCGGGCGACGCGGGGGATAACCACCCCGGCGGTG
GTGGTGAAAGAAGAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCTTCG
CCTTCGAAGGAGGGGGCGGGTACCACGGCGCGCGGCGGGCGGGTGACACG
CTCTCGGGCTCACAACATCGGATTCAAAGAAGTCGCCGACAGTGGCGGCG
GTGAGAACACCGCAGGAGGAGGCGGTGCTAGCGGCAGCGCCCCCGCCGCG
CTTGACCCCGTCGGAGACCCCGCTCGAACGTCGAGACCGGTGACGTGCGA
CAAGCCCGGGCGTTCCACCGAAGGCTCCGGCGGCACCGCCACGACCTCGT
CTTCCGGAGGGGGGGAGGGTGGCGGTAGCGGCAGCGGCGGCGGCGGGAGC
GGGGTCGGTGGGAGCGGGGAGCCTCTCCGGCGGCTGAGTCTGGTCCACCA
GCCGACGCGATTCGACGGCACGGAGGCGGAGGACGACGAGGACGACGAGG
AGGACGGCTACGGCTGGGGGCAGCAGGTGGTGGTGAAGCCGGTGAAGGTG
TCGCTGTGGGACAAGCGTGGGCTGAGGTCGAAGGCGCTGCTGTCCCTCAA
CCAGCTCCGCGCGTGCATCATCGAGCGCGCCGAGAGCACTCCGCAGAAGG
CCACCTACCACCGCGCGGCGAAGCTGGTGAGAGACTTCGAGAAGGAAGAG
AAGCTGTTTGTATTTTCTGAAGCAGTAGCGACGGCAACTTTGTCCTGTCG
ATGA back to top
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