EsuBft597_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft597_11a-0001
Unique NameEsuBft597_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:94218..94972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft597_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length75
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft597_11aEsuBft597_11aEctocarpus subulatus male Bft15bgeneScaffold_38 94218..94972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_11a-0001-exonEsuBft597_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 94218..94972 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_11a-0001-exonagat-three_prime_utr-18944Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 94218..94592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_11a-0001-cdsEsuBft597_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 94593..94742 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_11a-0001-exonagat-five_prime_utr-12066Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_38 94743..94972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft597_11a-0001EsuBft597_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 94593..94742 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft597_11a-0001 ID=EsuBft597_11a-0001|Name=EsuBft597_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=755bp|location=Sequence derived from alignment at Scaffold_38:94218..94972- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTAAACGACAAGAAACTCTCGGAGTTGATAGAGGCAATGGGCACACCGA
AGGATGCCAAAGGTCGGGACCAGGCCGGATCTAGAATCAAAGAAGGGTGG
GAAAAGCTGGTAAACACAACGGCAAGTAGAGTTCTCGGTAGAAAGTTGAT
AGTTTGTAAGAGAGCAGTGAAGTGGTGGGACGAAGAAATCAAGCAAGCAG
TTCGAGTACGTAGAGAGTCACACGCAAAATATGCGGCAGGGAAAACCGAT
GCAGGATGGAAGGAGTTATGTTGAGAATAGAAAGAGGGTGAAGGAGTTGG
TGGGGAAGAAGAAGAAAGCGTTGTGGGAGGAAGTAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAC
GACAACTTCGACTCGGAGTTTGAGAAGGAAATCAACTCGTGGGCAGAGGA
AAACGTTGAAAGATCTCGGAGGGAATGTAAGGATGTAGGCGGGTTGCAGG
GAGAGTTCACGCGAGAAGAGGTAAAGGACTGTGTAGCGAAACTTAAGAAT
AGAAAAGCGGCAGGGGCTGATGGAATTGTGAATGAGCTTTNNNNNNNNNN
NNNNN
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protein sequence of EsuBft597_11a-0001

>EsuBft597_11 ID=EsuBft597_11|Name=EsuBft597_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MRQGKPMQDGRSYVENRKRVKELVGKKKKALWEEVXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_38:94218..94972-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft597_11a-0001 ID=EsuBft597_11a-0001|Name=EsuBft597_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=755bp|location=Sequence derived from alignment at Scaffold_38:94218..94972- (Ectocarpus subulatus male Bft15b)
TGTAAACGACAAGAAACTCTCGGAGTTGATAGAGGCAATGGGCACACCGA
AGGATGCCAAAGGTCGGGACCAGGCCGGATCTAGAATCAAAGAAGGGTGG
GAAAAGCTGGTAAACACAACGGCAAGTAGAGTTCTCGGTAGAAAGTTGAT
AGTTTGTAAGAGAGCAGTGAAGTGGTGGGACGAAGAAATCAAGCAAGCAG
TTCGAGTACGTAGAGAGTCACACGCAAAATATGCGGCAGGGAAAACCGAT
GCAGGATGGAAGGAGTTATGTTGAGAATAGAAAGAGGGTGAAGGAGTTGG
TGGGGAAGAAGAAGAAAGCGTTGTGGGAGGAAGTAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAC
GACAACTTCGACTCGGAGTTTGAGAAGGAAATCAACTCGTGGGCAGAGGA
AAACGTTGAAAGATCTCGGAGGGAATGTAAGGATGTAGGCGGGTTGCAGG
GAGAGTTCACGCGAGAAGAGGTAAAGGACTGTGTAGCGAAACTTAAGAAT
AGAAAAGCGGCAGGGGCTGATGGAATTGTGAATGAGCTTTNNNNNNNNNN
NNNNN
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Coding sequence (CDS) from alignment at Scaffold_38:94218..94972-

>EsuBft597_11a-0001 ID=EsuBft597_11a-0001|Name=EsuBft597_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_38:94218..94972- (Ectocarpus subulatus male Bft15b)
ATGCGGCAGGGAAAACCGATGCAGGATGGAAGGAGTTATGTTGAGAATAG
AAAGAGGGTGAAGGAGTTGGTGGGGAAGAAGAAGAAAGCGTTGTGGGAGG
AAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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