EsuBft555_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft555_8a-0001
Unique Name	EsuBft555_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_581	contig	Scaffold_581:96464..97843 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft555_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	138
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft555_8a	EsuBft555_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_581 96464..97843 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_8a-0001-exon	EsuBft555_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 96464..97843 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_8a-0001-exon	agat-three_prime_utr-18320	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_581 96464..97614 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_8a-0001-cds	EsuBft555_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_581 97615..97767 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_8a-0001-exon	agat-five_prime_utr-11632	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_581 97768..97843 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_8a-0001	EsuBft555_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_581 97615..97767 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_581:96464..97843-
coding sequence from alignment at Scaffold_581:96464..97843-

spliced messenger RNA

>EsuBft555_8a-0001 ID=EsuBft555_8a-0001|Name=EsuBft555_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1380bp|location=Sequence derived from alignment at Scaffold_581:96464..97843- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAGGCATTCGAGGGGTGGTGGTCGAGGAGGACAGGGCACTAGTCA
GAGTGGGGGCAGGGAGGAAAGAGCAAATGTCCACCGAGGGCAGCACCACC
ATGACTGGCAGGCACCACCGCCCCAGCAGCAGCAACCGCAGCCGCAGCAA
CAGCAGCAATGGCAGCAGCCACGCCGCAGATGCAGGCGTCACCACCGTCC
TAATAGTTACAGGGAAGGGGGGGGTATGACGGGGGTCCTCAAGGGGGCAC
GGTCTACTGCGGCCAGCAAGGCAACTTCCATACTGGAAGGTGGGTGGGAG
GTGACAGGGGCGGTAACGTGTCTGTCAAGGAGGAAGTGAAGGAGGAGGAG
GTGTTGAGGGAAGAAAAGACTACACATGTTGATGAAAAGCTCAAAACAGA
GTTCCAAGAAGGGTTGTCGAACAAAGAGAAAGAAATCGAAACTCTGAAGC
AGAAGTTGGCTGAAATGGGAGGTCAGTTCAGACAAGTGAGCCTCCAGGAC
ACGGACGAAAAACCTCGAACATGTGCAACAGCAGTCGCATCTGAACCTAG
TGTGGCTGCAAGGGAGGTGGCGCCTGTCAAACAAGAGCAGGAAGATGTTG
TGTCTCACTCAGCGACGGTAGCGACGGTTAAGAAAGAACCGGAGAGCATC
ACGATCCAGCCGTTGACCTCGAGGGAGAAACAAAAAAATACGGGTTATGT
GACGATGAACATGAAGGATTGGACTAAGCTTCCTTGGATACCACTTGCTG
ATTCGCCGGGAGAGCTGGTTTCTTTCAACACAAGGTTGGAAGATACGGTC
AACGATGTGTTTTTGGCGGTGGGGGATTACTGTGGATGGTGGGTCCCAGG
GCGGGAAAAACCTGTGCACAGGCATCTGATCACTTCCATTACCCGATCCA
TGTCCCCTGCCCAGACGATGACGTTCCGCGAGAAGATAGTCAAGGTCTTT
GCGGACACATCGAAGAAGATGGAAGAAGGGTCAACGGGTAGGAAGGCGCT
GGCATTGTTCACTTCGGCGTTGGGGAGGTTAGTGAGTTCATCCTCGCCCG
AGAAAATGGTGGACGACTTGCAGACCTTTGCGGTACCGACTGGAACGCCG
TATAGTGAGTACTTGAGTACCTTGCAGGGGTTGGTGCACAATGTTCGGAA
CTTGGGAATTGTGACGCCGCAGGATAAGACAATTCAACTGGCAGTCAGAG
AGAGTGTGTCTGATCAACACAGTGTTCTGACCGCTTCCGTGTTTAAGGGC
AAGGAGTTGGGAGTGGTGCCGTTCGATAACATAGACACCTTGATGCATGA
ATTGCGAGATTTCGAGGCGGTCAAGGGGGGGGCAACGACTCCGACGCGAA
GGATGGCTCAGGTGAAGAGCTCCTCTGGGG

protein sequence of EsuBft555_8a-0001

>EsuBft555_8 ID=EsuBft555_8|Name=EsuBft555_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MSTEGSTTMTGRHHRPSSSNRSRSNSSNGSSHAADAGVTTVLIVTGKGGV

mRNA from alignment at Scaffold_581:96464..97843-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft555_8a-0001 ID=EsuBft555_8a-0001|Name=EsuBft555_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1380bp|location=Sequence derived from alignment at Scaffold_581:96464..97843- (Ectocarpus subulatus male Bft15b)
ATGCCAAGGCATTCGAGGGGTGGTGGTCGAGGAGGACAGGGCACTAGTCA
GAGTGGGGGCAGGGAGGAAAGAGCAAATGTCCACCGAGGGCAGCACCACC
ATGACTGGCAGGCACCACCGCCCCAGCAGCAGCAACCGCAGCCGCAGCAA
CAGCAGCAATGGCAGCAGCCACGCCGCAGATGCAGGCGTCACCACCGTCC
TAATAGTTACAGGGAAGGGGGGGGTATGACGGGGGTCCTCAAGGGGGCAC
GGTCTACTGCGGCCAGCAAGGCAACTTCCATACTGGAAGGTGGGTGGGAG
GTGACAGGGGCGGTAACGTGTCTGTCAAGGAGGAAGTGAAGGAGGAGGAG
GTGTTGAGGGAAGAAAAGACTACACATGTTGATGAAAAGCTCAAAACAGA
GTTCCAAGAAGGGTTGTCGAACAAAGAGAAAGAAATCGAAACTCTGAAGC
AGAAGTTGGCTGAAATGGGAGGTCAGTTCAGACAAGTGAGCCTCCAGGAC
ACGGACGAAAAACCTCGAACATGTGCAACAGCAGTCGCATCTGAACCTAG
TGTGGCTGCAAGGGAGGTGGCGCCTGTCAAACAAGAGCAGGAAGATGTTG
TGTCTCACTCAGCGACGGTAGCGACGGTTAAGAAAGAACCGGAGAGCATC
ACGATCCAGCCGTTGACCTCGAGGGAGAAACAAAAAAATACGGGTTATGT
GACGATGAACATGAAGGATTGGACTAAGCTTCCTTGGATACCACTTGCTG
ATTCGCCGGGAGAGCTGGTTTCTTTCAACACAAGGTTGGAAGATACGGTC
AACGATGTGTTTTTGGCGGTGGGGGATTACTGTGGATGGTGGGTCCCAGG
GCGGGAAAAACCTGTGCACAGGCATCTGATCACTTCCATTACCCGATCCA
TGTCCCCTGCCCAGACGATGACGTTCCGCGAGAAGATAGTCAAGGTCTTT
GCGGACACATCGAAGAAGATGGAAGAAGGGTCAACGGGTAGGAAGGCGCT
GGCATTGTTCACTTCGGCGTTGGGGAGGTTAGTGAGTTCATCCTCGCCCG
AGAAAATGGTGGACGACTTGCAGACCTTTGCGGTACCGACTGGAACGCCG
TATAGTGAGTACTTGAGTACCTTGCAGGGGTTGGTGCACAATGTTCGGAA
CTTGGGAATTGTGACGCCGCAGGATAAGACAATTCAACTGGCAGTCAGAG
AGAGTGTGTCTGATCAACACAGTGTTCTGACCGCTTCCGTGTTTAAGGGC
AAGGAGTTGGGAGTGGTGCCGTTCGATAACATAGACACCTTGATGCATGA
ATTGCGAGATTTCGAGGCGGTCAAGGGGGGGGCAACGACTCCGACGCGAA
GGATGGCTCAGGTGAAGAGCTCCTCTGGGG

Coding sequence (CDS) from alignment at Scaffold_581:96464..97843-

>EsuBft555_8a-0001 ID=EsuBft555_8a-0001|Name=EsuBft555_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_581:96464..97843- (Ectocarpus subulatus male Bft15b)
ATGTCCACCGAGGGCAGCACCACCATGACTGGCAGGCACCACCGCCCCAG
CAGCAGCAACCGCAGCCGCAGCAACAGCAGCAATGGCAGCAGCCACGCCG
CAGATGCAGGCGTCACCACCGTCCTAATAGTTACAGGGAAGGGGGGGGTA
TGA