EsuBft499_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft499_6a-0001
Unique Name	EsuBft499_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:353585..354570 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra71794
ProteomeId	EsuBft499_6
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	4776\|Peronosporales
Length	986
Hectar predicted targeting category	other localisation
Evalue	8.22e-54
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QHW0@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft499_6a	EsuBft499_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 353585..354570 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_6a-0001-exon	EsuBft499_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 353585..354570 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_6a-0001-cds	EsuBft499_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 353585..354550 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_6a-0001-exon	agat-five_prime_utr-10930	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_30 354551..354570 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_6a-0001	EsuBft499_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 353585..354550 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:353585..354570-
coding sequence from alignment at Scaffold_30:353585..354570-

spliced messenger RNA

>EsuBft499_6a-0001 ID=EsuBft499_6a-0001|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=986bp|location=Sequence derived from alignment at Scaffold_30:353585..354570- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGAGGAGAGACGTGTGATCATGATCATGGTGGTCCACGTGGATGACATT
TTTGCTGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAA
CGAGATGGTCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGT
GCTTTTACGAGAGAGACGTAGAGAGAGGGCTGTTGAGGATTTCGCAGCAG
AGGTTTGCCGAAGAGTTGGCTGCAGAGTACGGAATTGAGTGGGGGAGGAG
TGTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAG
CGTGCGCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTG
GCCACTCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCG
GTATTGTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTT
TAGGGTACGTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGA
GTGGTGACTGGGATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAG
CAAGGCGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGG
GAGGGTGTGTGACTTGGTTTTCGAGGACACAAAAGTGTGTCACGCTTTCC
ACCACGGAAGCAGAGTATGTGGCAATTGCCGATGTCTTGAAGGAAGTGTT
GTTCCTGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCAGGTATGCCGT
GCATCCCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTGCGCACAAC
CCGATCACGAACTCCAACTCGAAACACATCGATGTACGACATCACTTTAT
CAGGGAGCTGGTAGAGAGGAAAGAGATTTCAATTACTAATGTGCCGACGC
CATTTCAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGTCTTTT
GCGTTGCACCGTGACTTTGTGATGAACTTGCAGTGA

protein sequence of EsuBft499_6a-0001

>EsuBft499_6 ID=EsuBft499_6|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=321bp
MIMVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDV
ERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPF
RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRT
SWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWF
SRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFED
NQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADF
LTKAISKESFALHRDFVMNLQ

mRNA from alignment at Scaffold_30:353585..354570-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft499_6a-0001 ID=EsuBft499_6a-0001|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=986bp|location=Sequence derived from alignment at Scaffold_30:353585..354570- (Ectocarpus subulatus male Bft15b)
TGGAGGAGAGACGTGTGATCATGATCATGGTGGTCCACGTGGATGACATT
TTTGCTGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGCGAGGACCTCAA
CGAGATGGTCCCCGTGAAAAACCTTGGAGAGTTGAGGTGGTACTCTGCGT
GCTTTTACGAGAGAGACGTAGAGAGAGGGCTGTTGAGGATTTCGCAGCAG
AGGTTTGCCGAAGAGTTGGCTGCAGAGTACGGAATTGAGTGGGGGAGGAG
TGTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGACGAGAACGAAG
CGTGCGCTGATGTCCCTTTTCGCGAGTTGGTAGGATCTCTGATGTGGTTG
GCCACTCAAACAAGGCCGGACATCGCGAACGCAGTACGAGCAGTAGCGCG
GTATTGTGCATCTCCCAAGATGGTGCACTGGAAGGCAGCACTCGGTATTT
TAGGGTACGTACGGAGGACGAGTTGGATGGGGATTACATTTGAGAGGGGA
GTGGTGACTGGGATGAGCATGCAGGTGTTTGTGGATGCCGACTATGCAAG
CAAGGCGACAGACCGTAGATCGGTGTCAGGAGGGCTAGTGATGTGTGGGG
GAGGGTGTGTGACTTGGTTTTCGAGGACACAAAAGTGTGTCACGCTTTCC
ACCACGGAAGCAGAGTATGTGGCAATTGCCGATGTCTTGAAGGAAGTGTT
GTTCCTGAGGCAGGTGTGGCGTTTTATGTTGCCAGATGCAGGTATGCCGT
GCATCCCGGTGTTCGAGGATAATCAGGGAGCGATTCAGATTGCGCACAAC
CCGATCACGAACTCCAACTCGAAACACATCGATGTACGACATCACTTTAT
CAGGGAGCTGGTAGAGAGGAAAGAGATTTCAATTACTAATGTGCCGACGC
CATTTCAGCATGCAGATTTCTTGACGAAGGCTATTAGCAAGGAGTCTTTT
GCGTTGCACCGTGACTTTGTGATGAACTTGCAGTGA

Coding sequence (CDS) from alignment at Scaffold_30:353585..354570-

>EsuBft499_6a-0001 ID=EsuBft499_6a-0001|Name=EsuBft499_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=966bp|location=Sequence derived from alignment at Scaffold_30:353585..354570- (Ectocarpus subulatus male Bft15b)
ATGATCATGGTGGTCCACGTGGATGACATTTTTGCTGTAGGGCAGAAGGA
GAGGTGTGACAAGTTTGGCGAGGACCTCAACGAGATGGTCCCCGTGAAAA
ACCTTGGAGAGTTGAGGTGGTACTCTGCGTGCTTTTACGAGAGAGACGTA
GAGAGAGGGCTGTTGAGGATTTCGCAGCAGAGGTTTGCCGAAGAGTTGGC
TGCAGAGTACGGAATTGAGTGGGGGAGGAGTGTGCCCTTGCCTGTGAGCG
TGAAGCTCACCGACTTTGACGAGAACGAAGCGTGCGCTGATGTCCCTTTT
CGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACAAGGCCGGA
CATCGCGAACGCAGTACGAGCAGTAGCGCGGTATTGTGCATCTCCCAAGA
TGGTGCACTGGAAGGCAGCACTCGGTATTTTAGGGTACGTACGGAGGACG
AGTTGGATGGGGATTACATTTGAGAGGGGAGTGGTGACTGGGATGAGCAT
GCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGGCGACAGACCGTAGAT
CGGTGTCAGGAGGGCTAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTT
TCGAGGACACAAAAGTGTGTCACGCTTTCCACCACGGAAGCAGAGTATGT
GGCAATTGCCGATGTCTTGAAGGAAGTGTTGTTCCTGAGGCAGGTGTGGC
GTTTTATGTTGCCAGATGCAGGTATGCCGTGCATCCCGGTGTTCGAGGAT
AATCAGGGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCCAACTC
GAAACACATCGATGTACGACATCACTTTATCAGGGAGCTGGTAGAGAGGA
AAGAGATTTCAATTACTAATGTGCCGACGCCATTTCAGCATGCAGATTTC
TTGACGAAGGCTATTAGCAAGGAGTCTTTTGCGTTGCACCGTGACTTTGT
GATGAACTTGCAGTGA