EsuBft499_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft499_5a-0001
Unique NameEsuBft499_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:354572..355265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft499_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length69
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft499_5aEsuBft499_5aEctocarpus subulatus male Bft15bgeneScaffold_30 354572..355265 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_5a-0001-exonEsuBft499_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 354572..355265 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_5a-0001-exonagat-three_prime_utr-17186Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 354572..354998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_5a-0001-cdsEsuBft499_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 354999..355232 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_5a-0001-exonagat-five_prime_utr-10929Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_30 355233..355265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_5a-0001EsuBft499_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 354999..355232 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft499_5a-0001 ID=EsuBft499_5a-0001|Name=EsuBft499_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=694bp|location=Sequence derived from alignment at Scaffold_30:354572..355265- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCGTGGATTCTGGGGGGGTACGGAGACCGCAGATGTTCGCAACGATGTT
CGCCACCCGTGAGGATGTGGACGCCCCTCTTCGCGCCAAGCGCCCGCCCG
ACAAGATGCCAGACCTTCCTCACTGCCTCGCCAGCGACCTCCCCGTGCCG
AAAACGTTCAAGGAGGCCATGCGGTCTCAGCATTCAGAGTTGTGGAATGA
TGCAGTCGATCGAGAGTTTTTCGGTTTTTGGATGCAGGAACTTTTAGTCC
GGTGTAGCAACCAGTAGAGAACGCGATCAATGCTAAGTGGGTTTTAAACT
GTAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCAAGACTTGTA
GCGCGGGGGGACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGC
ACCCACCGTATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCGTGTG
AGCAGAATCTTGACTTGTGCCATTTCGACATTCAGCAGGCTTTTGTGCAG
TCTGAGCTTGATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAG
GTTATCTGGCTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGC
AGGCATCACGACATTGGCATTCGCACCTGACGAGGTGTTTGTTACTTTCA
GGTTTTTGTTGCAGTGTCTGGCGGATGCATGTGTTTCTCGATTG
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protein sequence of EsuBft499_5a-0001

>EsuBft499_5 ID=EsuBft499_5|Name=EsuBft499_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MFATMFATREDVDAPLRAKRPPDKMPDLPHCLASDLPVPKTFKEAMRSQH
SELWNDAVDREFFGFWMQELLVRCSNQ
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mRNA from alignment at Scaffold_30:354572..355265-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft499_5a-0001 ID=EsuBft499_5a-0001|Name=EsuBft499_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=694bp|location=Sequence derived from alignment at Scaffold_30:354572..355265- (Ectocarpus subulatus male Bft15b)
CCCGTGGATTCTGGGGGGGTACGGAGACCGCAGATGTTCGCAACGATGTT
CGCCACCCGTGAGGATGTGGACGCCCCTCTTCGCGCCAAGCGCCCGCCCG
ACAAGATGCCAGACCTTCCTCACTGCCTCGCCAGCGACCTCCCCGTGCCG
AAAACGTTCAAGGAGGCCATGCGGTCTCAGCATTCAGAGTTGTGGAATGA
TGCAGTCGATCGAGAGTTTTTCGGTTTTTGGATGCAGGAACTTTTAGTCC
GGTGTAGCAACCAGTAGAGAACGCGATCAATGCTAAGTGGGTTTTAAACT
GTAAGGCAGACGAGTACGGATGGCCGACGAAATTCAAGGCAAGACTTGTA
GCGCGGGGGGACATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGC
ACCCACCGTATCAGTGTCTAGTGTGCGCTTGTTGGCAGCATTAGCGTGTG
AGCAGAATCTTGACTTGTGCCATTTCGACATTCAGCAGGCTTTTGTGCAG
TCTGAGCTTGATGAGGATGTTTTCATGCGCTTACCGCAGGGGTGTGGTAG
GTTATCTGGCTTGATCGTGAAGCTATGCAAGAGTCTGTATGGTTTGAAGC
AGGCATCACGACATTGGCATTCGCACCTGACGAGGTGTTTGTTACTTTCA
GGTTTTTGTTGCAGTGTCTGGCGGATGCATGTGTTTCTCGATTG
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Coding sequence (CDS) from alignment at Scaffold_30:354572..355265-

>EsuBft499_5a-0001 ID=EsuBft499_5a-0001|Name=EsuBft499_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_30:354572..355265- (Ectocarpus subulatus male Bft15b)
ATGTTCGCAACGATGTTCGCCACCCGTGAGGATGTGGACGCCCCTCTTCG
CGCCAAGCGCCCGCCCGACAAGATGCCAGACCTTCCTCACTGCCTCGCCA
GCGACCTCCCCGTGCCGAAAACGTTCAAGGAGGCCATGCGGTCTCAGCAT
TCAGAGTTGTGGAATGATGCAGTCGATCGAGAGTTTTTCGGTTTTTGGAT
GCAGGAACTTTTAGTCCGGTGTAGCAACCAGTAG
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